Wall clock time and date at job start Tue Mar 31 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86797 * 119.99574 * 2 1 4 4 H 1.48500 * 109.47222 * 240.00238 * 3 2 1 5 5 H 1.48502 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47118 * 120.00244 * 3 2 1 7 7 C 1.40151 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.40820 * 119.99826 * 359.97438 * 7 2 1 10 10 N 1.33693 * 119.94020 * 0.02562 * 9 7 2 11 11 C 1.31284 * 121.63692 * 179.97438 * 10 9 7 12 12 C 1.39054 * 121.33873 * 359.97438 * 11 10 9 13 13 C 1.38394 * 119.72705 * 0.02562 * 12 11 10 14 14 C 1.39684 * 118.47319 * 359.97438 * 13 12 11 15 15 C 1.47818 * 120.64682 * 180.02562 * 14 13 12 16 16 C 1.39710 * 120.14834 * 129.98049 * 15 14 13 17 17 C 1.37897 * 119.83924 * 179.97438 * 16 15 14 18 18 C 1.38427 * 120.15611 * 359.97139 * 17 16 15 19 19 C 1.38389 * 120.30670 * 0.02769 * 18 17 16 20 20 C 1.50692 * 119.92087 * 179.97438 * 19 18 17 21 21 Br 1.96598 * 109.47383 * 89.99692 * 20 19 18 22 22 C 1.37929 * 120.15226 * 359.73662 * 19 18 17 23 23 H 0.96997 * 120.00579 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.32928 * 179.72127 * 11 10 9 25 25 H 1.07996 * 120.13642 * 179.97438 * 12 11 10 26 26 H 1.07995 * 120.76558 * 179.97438 * 13 12 11 27 27 H 1.07990 * 120.08159 * 359.97438 * 16 15 14 28 28 H 1.07999 * 119.92128 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.84684 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.47135 * 209.99497 * 20 19 18 31 31 H 1.09002 * 109.47509 * 329.99624 * 20 19 18 32 32 H 1.07996 * 120.07961 * 180.25302 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6966 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0947 1.6965 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0332 -2.4319 -0.0005 11 6 -0.7230 -3.5489 -0.0010 12 6 -0.0925 -4.7883 -0.0021 13 6 1.2899 -4.8550 -0.0022 14 6 2.0142 -3.6606 -0.0016 15 6 3.4923 -3.6758 -0.0022 16 6 4.2015 -2.9061 -0.9277 17 6 5.5804 -2.9247 -0.9222 18 6 6.2617 -3.7029 -0.0022 19 6 5.5655 -4.4676 0.9173 20 6 6.3160 -5.3121 1.9145 21 35 6.6568 -4.2596 3.5397 22 6 4.1863 -4.4549 0.9263 23 1 -0.4851 0.8400 0.0004 24 1 -1.8021 -3.5043 0.0036 25 1 -0.6791 -5.6950 -0.0021 26 1 1.7969 -5.8085 -0.0026 27 1 3.6713 -2.2982 -1.6456 28 1 6.1300 -2.3306 -1.6373 29 1 7.3417 -3.7134 -0.0021 30 1 5.7212 -6.1897 2.1681 31 1 7.2647 -5.6290 1.4813 32 1 3.6442 -5.0489 1.6471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243927533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:28 Heat of formation + Delta-G solvation = 47.388065 kcal Electronic energy + Delta-G solvation = -17721.708424 eV Core-core repulsion = 14885.625800 eV Total energy + Delta-G solvation = -2836.082624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.12072 -37.74631 -33.78707 -33.23971 -31.76969 -30.36334 -29.74557 -28.48127 -25.94059 -25.54898 -22.90638 -21.57761 -20.98710 -19.75883 -17.59219 -16.08616 -15.73021 -15.02798 -14.89000 -14.44359 -14.12361 -13.61347 -13.41731 -12.92894 -12.80489 -12.64083 -12.16349 -12.02434 -11.59909 -11.28196 -11.22740 -11.12715 -10.94575 -10.56753 -10.38044 -9.94622 -9.74512 -9.71476 -9.46404 -8.66272 -8.24930 -8.04679 -7.66736 -7.35002 -6.52009 -4.60848 1.33687 1.82398 2.30325 2.71696 2.98031 3.03103 3.05964 3.17460 3.86955 4.38056 4.65200 4.76910 4.85107 5.33518 5.48155 5.51506 5.77232 5.80403 6.02773 6.04227 6.06497 6.16700 6.44755 6.52863 6.60339 6.78527 6.88497 6.97674 7.04586 7.19393 7.28884 7.45623 7.60178 7.69913 7.95134 8.15138 8.53494 8.82340 9.99530 10.18356 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.004880 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.494822 B = 5735.899028 C = 6642.546672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.419 4.419 8 H 0.094 0.906 9 C 0.269 3.731 10 N -0.482 5.482 11 C 0.133 3.867 12 C -0.322 4.322 13 C -0.032 4.032 14 C -0.241 4.241 15 C 0.030 3.970 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.026 4.026 21 Br -0.165 7.165 22 C -0.110 4.110 23 H 0.276 0.724 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.381 -6.514 2.382 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.159 4.159 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.449 4.449 8 H 0.112 0.888 9 C 0.145 3.855 10 N -0.193 5.193 11 C -0.035 4.035 12 C -0.345 4.345 13 C -0.056 4.056 14 C -0.245 4.245 15 C 0.030 3.970 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.105 4.105 20 C -0.141 4.141 21 Br -0.084 7.084 22 C -0.129 4.129 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.918 -5.174 2.958 12.439 hybrid contribution 0.626 -0.396 -0.260 0.785 sum 11.545 -5.570 2.698 13.099 Atomic orbital electron populations 1.70100 1.07311 1.28245 1.27053 1.26154 0.94891 1.01286 0.93528 0.86427 0.80257 0.80308 0.80289 1.18624 1.20054 1.18642 1.19811 0.94988 0.89254 1.40828 0.88805 1.18505 0.87960 0.90926 0.88065 1.68772 1.07057 1.26573 1.16920 1.22618 0.98840 0.88870 0.93216 1.21218 0.94571 0.97875 1.20834 1.20873 0.93776 0.95641 0.95321 1.19333 0.90660 0.94522 1.20031 1.18694 0.92824 0.93087 0.92445 1.21505 0.93347 0.98458 0.98598 1.20964 0.94466 0.99483 0.99144 1.20758 0.98765 0.98483 0.96800 1.19251 0.93752 1.00291 0.97198 1.23521 1.03511 0.97086 0.89941 1.97402 1.96602 1.75658 1.38782 1.21079 0.92416 1.00615 0.98840 0.91304 0.86355 0.88683 0.88604 0.85310 0.86598 0.87035 0.87880 0.87962 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.29 11.46 55.56 0.64 -17.66 16 2 C 0.07 1.69 5.50 -17.32 -0.10 1.59 16 3 Si 0.90 18.29 29.56 -169.99 -5.02 13.26 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.42 -10.77 7.96 -37.89 -0.30 -11.07 16 8 H 0.09 2.29 5.23 -52.49 -0.27 2.01 16 9 C 0.27 7.07 6.56 -84.71 -0.56 6.52 16 10 N -0.48 -12.95 7.85 -10.91 -0.09 -13.03 16 11 C 0.13 3.15 11.17 -17.48 -0.20 2.95 16 12 C -0.32 -7.01 10.10 -39.22 -0.40 -7.41 16 13 C -0.03 -0.69 9.67 -38.98 -0.38 -1.07 16 14 C -0.24 -5.64 5.53 -104.07 -0.58 -6.22 16 15 C 0.03 0.62 5.03 -104.89 -0.53 0.09 16 16 C -0.10 -1.93 7.56 -39.16 -0.30 -2.22 16 17 C -0.12 -1.97 10.03 -39.64 -0.40 -2.37 16 18 C -0.13 -1.91 9.70 -39.46 -0.38 -2.30 16 19 C -0.10 -1.58 5.19 -104.68 -0.54 -2.13 16 20 C -0.03 -0.31 6.73 36.00 0.24 -0.07 16 21 Br -0.16 -2.23 33.92 -68.01 -2.31 -4.54 16 22 C -0.11 -1.98 9.20 -39.16 -0.36 -2.34 16 23 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 24 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 25 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.13 2.57 7.24 -52.49 -0.38 2.19 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -27.90 299.32 -10.20 -38.10 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.17 Total: 5.38 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -4.76 Total: -26.02 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.55 Total: -30.69 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 35 Polarization: -2.23 SS G_CDS: -2.31 Total: -4.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.90 -10.20 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243927533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.483 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds