Wall clock time and date at job start Tue Mar 31 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86797 * 119.99574 * 2 1 4 4 H 1.48500 * 109.47222 * 240.00238 * 3 2 1 5 5 H 1.48502 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47118 * 120.00244 * 3 2 1 7 7 C 1.40151 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.40820 * 119.99826 * 359.97438 * 7 2 1 10 10 N 1.33693 * 119.94020 * 0.02562 * 9 7 2 11 11 C 1.31284 * 121.63692 * 179.97438 * 10 9 7 12 12 C 1.39054 * 121.33873 * 359.97438 * 11 10 9 13 13 C 1.38394 * 119.72705 * 0.02562 * 12 11 10 14 14 C 1.39684 * 118.47319 * 359.97438 * 13 12 11 15 15 C 1.47818 * 120.64682 * 180.02562 * 14 13 12 16 16 C 1.39710 * 120.14834 * 129.98049 * 15 14 13 17 17 C 1.37897 * 119.83924 * 179.97438 * 16 15 14 18 18 C 1.38427 * 120.15611 * 359.97139 * 17 16 15 19 19 C 1.38389 * 120.30670 * 0.02769 * 18 17 16 20 20 C 1.50692 * 119.92087 * 179.97438 * 19 18 17 21 21 Br 1.96598 * 109.47383 * 89.99692 * 20 19 18 22 22 C 1.37929 * 120.15226 * 359.73662 * 19 18 17 23 23 H 0.96997 * 120.00579 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.32928 * 179.72127 * 11 10 9 25 25 H 1.07996 * 120.13642 * 179.97438 * 12 11 10 26 26 H 1.07995 * 120.76558 * 179.97438 * 13 12 11 27 27 H 1.07990 * 120.08159 * 359.97438 * 16 15 14 28 28 H 1.07999 * 119.92128 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.84684 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.47135 * 209.99497 * 20 19 18 31 31 H 1.09002 * 109.47509 * 329.99624 * 20 19 18 32 32 H 1.07996 * 120.07961 * 180.25302 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6966 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0947 1.6965 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0332 -2.4319 -0.0005 11 6 -0.7230 -3.5489 -0.0010 12 6 -0.0925 -4.7883 -0.0021 13 6 1.2899 -4.8550 -0.0022 14 6 2.0142 -3.6606 -0.0016 15 6 3.4923 -3.6758 -0.0022 16 6 4.2015 -2.9061 -0.9277 17 6 5.5804 -2.9247 -0.9222 18 6 6.2617 -3.7029 -0.0022 19 6 5.5655 -4.4676 0.9173 20 6 6.3160 -5.3121 1.9145 21 35 6.6568 -4.2596 3.5397 22 6 4.1863 -4.4549 0.9263 23 1 -0.4851 0.8400 0.0004 24 1 -1.8021 -3.5043 0.0036 25 1 -0.6791 -5.6950 -0.0021 26 1 1.7969 -5.8085 -0.0026 27 1 3.6713 -2.2982 -1.6456 28 1 6.1300 -2.3306 -1.6373 29 1 7.3417 -3.7134 -0.0021 30 1 5.7212 -6.1897 2.1681 31 1 7.2647 -5.6290 1.4813 32 1 3.6442 -5.0489 1.6471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243927533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:28 Heat of formation + Delta-G solvation = 34.455268 kcal Electronic energy + Delta-G solvation = -17722.269232 eV Core-core repulsion = 14885.625800 eV Total energy + Delta-G solvation = -2836.643432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63820 -39.34749 -35.58612 -34.56742 -33.21756 -32.12931 -30.92797 -30.02042 -27.63893 -26.77531 -24.46747 -23.30586 -22.42852 -21.23821 -19.41625 -17.51327 -17.41880 -16.45222 -16.31149 -16.05325 -15.78923 -14.95405 -14.65177 -14.35621 -14.17879 -14.03558 -13.73511 -13.67641 -13.01566 -12.90877 -12.80829 -12.77626 -12.43476 -11.99031 -11.97429 -11.54686 -11.24500 -10.79831 -10.73325 -10.29803 -9.81433 -9.54279 -9.49445 -8.99003 -8.32579 -6.48167 0.14383 0.40378 0.96053 1.12999 1.34341 1.37087 1.48383 1.52844 2.19042 2.82310 3.03769 3.62975 3.87629 3.95645 4.13551 4.25056 4.34142 4.36379 4.50778 4.53701 4.64506 4.78102 4.80534 4.97933 5.15044 5.22014 5.23763 5.42808 5.62899 5.65495 5.67421 5.82974 6.01208 6.16701 6.22113 6.31056 6.70910 6.97039 8.16644 8.40191 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.004880 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.494822 B = 5735.899028 C = 6642.546672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.025 3.975 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.450 4.450 8 H 0.097 0.903 9 C 0.235 3.765 10 N -0.522 5.522 11 C 0.107 3.893 12 C -0.313 4.313 13 C -0.044 4.044 14 C -0.243 4.243 15 C -0.003 4.003 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.098 4.098 20 C -0.022 4.022 21 Br -0.179 7.179 22 C -0.116 4.116 23 H 0.280 0.720 24 H 0.137 0.863 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -7.546 2.564 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.115 0.885 9 C 0.111 3.889 10 N -0.234 5.234 11 C -0.059 4.059 12 C -0.336 4.336 13 C -0.068 4.068 14 C -0.247 4.247 15 C -0.004 4.004 16 C -0.137 4.137 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.098 4.098 20 C -0.135 4.135 21 Br -0.099 7.099 22 C -0.135 4.135 23 H 0.090 0.910 24 H 0.154 0.846 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.683 -6.241 3.137 15.363 hybrid contribution -0.162 -0.273 -0.324 0.454 sum 13.521 -6.514 2.813 15.269 Atomic orbital electron populations 1.70202 1.08860 1.29239 1.28839 1.27007 0.95625 1.04475 0.92631 0.85381 0.78944 0.75978 0.80323 1.17662 1.19107 1.18634 1.20056 0.95300 0.90029 1.42634 0.88479 1.18968 0.88341 0.92541 0.89011 1.68693 1.07882 1.28366 1.18458 1.23037 0.99859 0.89209 0.93803 1.21570 0.95046 0.98335 1.18624 1.21257 0.94019 0.96467 0.95028 1.19717 0.92741 0.94136 1.18150 1.18699 0.91519 0.95516 0.94634 1.21419 0.94861 0.98750 0.98687 1.21264 0.93145 0.99554 0.99800 1.21214 1.00617 0.96572 0.95175 1.19538 0.92778 0.99973 0.97559 1.23655 1.05040 0.96432 0.88410 1.97424 1.96558 1.76204 1.39678 1.21121 0.93806 1.00292 0.98307 0.90968 0.84588 0.85473 0.85702 0.87528 0.83897 0.83300 0.86345 0.84673 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.59 11.46 21.86 0.25 -40.34 16 2 C 0.03 1.29 5.50 85.33 0.47 1.76 16 3 Si 0.97 38.38 29.56 68.60 2.03 40.41 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.45 -24.14 7.96 23.37 0.19 -23.95 16 8 H 0.10 4.93 5.23 -2.91 -0.02 4.92 16 9 C 0.24 12.94 6.56 40.38 0.26 13.20 16 10 N -0.52 -29.30 7.85 -188.43 -1.48 -30.78 16 11 C 0.11 5.20 11.17 84.97 0.95 6.15 16 12 C -0.31 -13.52 10.10 22.50 0.23 -13.29 16 13 C -0.04 -1.89 9.67 22.66 0.22 -1.67 16 14 C -0.24 -11.66 5.53 -19.51 -0.11 -11.77 16 15 C 0.00 -0.12 5.03 -20.04 -0.10 -0.22 16 16 C -0.12 -4.54 7.56 22.54 0.17 -4.37 16 17 C -0.12 -3.57 10.03 22.23 0.22 -3.35 16 18 C -0.12 -3.01 9.70 22.35 0.22 -2.79 16 19 C -0.10 -2.65 5.19 -19.90 -0.10 -2.76 16 20 C -0.02 -0.43 6.73 71.23 0.48 0.05 16 21 Br -0.18 -4.34 33.92 -20.37 -0.69 -5.03 16 22 C -0.12 -3.99 9.20 22.54 0.21 -3.79 16 23 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 24 H 0.14 5.83 8.06 -2.91 -0.02 5.80 16 25 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.11 4.46 7.24 -2.92 -0.02 4.44 16 28 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.12 2.04 8.08 -2.39 -0.02 2.02 16 31 H 0.14 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -63.54 299.32 4.54 -58.99 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.14 Total: 23.55 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 3.30 Total: -46.80 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.23 Total: -71.12 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 35 Polarization: -4.34 SS G_CDS: -0.69 Total: -5.03 kcal Total: -63.54 4.54 -58.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243927533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.447 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds