Wall clock time and date at job start Tue Mar 31 2020 11:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48501 * 109.47537 * 274.98620 * 3 2 1 5 5 H 1.48497 * 109.46948 * 34.99303 * 3 2 1 6 6 H 1.48502 * 109.46948 * 154.98618 * 3 2 1 7 7 C 1.40037 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00427 * 186.27800 * 7 2 1 9 9 C 1.41433 * 119.99535 * 6.28170 * 7 2 1 10 10 C 1.40477 * 119.77256 * 173.68122 * 9 7 2 11 11 C 1.39306 * 118.83360 * 179.97438 * 10 9 7 12 12 C 1.48389 * 120.82102 * 179.97438 * 11 10 9 13 13 C 1.39356 * 120.12289 * 359.74422 * 12 11 10 14 14 C 1.37993 * 119.87793 * 179.76898 * 13 12 11 15 15 C 1.38339 * 120.11963 * 0.50931 * 14 13 12 16 16 C 1.38294 * 120.24843 * 359.74761 * 15 14 13 17 17 C 1.50706 * 119.94267 * 180.02562 * 16 15 14 18 18 Br 1.96598 * 109.47278 * 269.97789 * 17 16 15 19 19 C 1.38044 * 120.12118 * 359.97438 * 16 15 14 20 20 C 1.40041 * 118.35730 * 0.02562 * 11 10 9 21 21 C 1.38504 * 119.42414 * 0.02562 * 20 11 10 22 22 N 1.31479 * 121.14425 * 359.97438 * 21 20 11 23 23 H 0.96995 * 120.00042 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.58730 * 0.02562 * 10 9 7 25 25 H 1.08009 * 120.06016 * 0.02562 * 13 12 11 26 26 H 1.07996 * 119.93785 * 180.23735 * 14 13 12 27 27 H 1.08005 * 119.87833 * 179.71836 * 15 14 13 28 28 H 1.08996 * 109.46795 * 29.98213 * 17 16 15 29 29 H 1.09010 * 109.46839 * 149.97652 * 17 16 15 30 30 H 1.07999 * 120.06599 * 179.97438 * 19 16 15 31 31 H 1.08002 * 120.28704 * 179.97438 * 20 11 10 32 32 H 1.08004 * 119.43056 * 179.72533 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3947 5 1 1.4955 2.6198 0.8029 6 1 3.5876 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 0.1017 9 6 1.3068 -2.4338 -0.1351 10 6 2.0202 -3.6365 -0.2689 11 6 1.3101 -4.8279 -0.3996 12 6 2.0190 -6.1235 -0.5442 13 6 3.4120 -6.1610 -0.5560 14 6 4.0660 -7.3692 -0.6859 15 6 3.3414 -8.5405 -0.8148 16 6 1.9588 -8.5086 -0.8091 17 6 1.1762 -9.7889 -0.9495 18 35 0.8324 -10.1415 -2.8528 19 6 1.2942 -7.3062 -0.6740 20 6 -0.0891 -4.7725 -0.3923 21 6 -0.7209 -3.5473 -0.2572 22 7 -0.0296 -2.4356 -0.1353 23 1 -0.4850 0.8400 0.0004 24 1 3.1002 -3.6377 -0.2695 25 1 3.9787 -5.2467 -0.4595 26 1 5.1455 -7.3998 -0.6913 27 1 3.8572 -9.4835 -0.9209 28 1 1.7491 -10.6132 -0.5249 29 1 0.2279 -9.6949 -0.4202 30 1 0.2145 -7.2823 -0.6700 31 1 -0.6706 -5.6771 -0.4919 32 1 -1.8001 -3.5040 -0.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243927583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:41 Heat of formation + Delta-G solvation = 47.485091 kcal Electronic energy + Delta-G solvation = -17147.888139 eV Core-core repulsion = 14311.809722 eV Total energy + Delta-G solvation = -2836.078417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -39.39283 -37.86401 -33.96683 -33.31127 -32.00116 -30.31305 -29.80365 -28.68039 -26.25669 -25.53392 -23.09980 -22.23023 -20.65180 -20.06917 -17.43344 -16.52141 -15.67470 -15.21852 -14.85980 -14.43691 -13.99815 -13.82812 -13.65664 -13.23810 -12.98573 -12.61360 -12.48896 -12.22615 -11.83682 -11.42563 -11.28015 -11.23375 -10.85869 -10.67883 -10.35227 -10.00662 -9.92507 -9.82503 -9.59549 -9.12905 -8.59432 -7.71553 -7.62407 -7.53780 -6.45856 -4.57697 1.04060 1.39182 2.01135 2.71229 3.02196 3.06679 3.09851 3.17087 3.91377 4.17359 4.48629 4.63895 4.73794 5.08047 5.16929 5.24170 5.40267 5.63141 5.71756 5.86033 5.98471 6.10283 6.13114 6.45318 6.56710 6.58369 6.62313 6.73171 6.93349 7.10216 7.14058 7.27496 7.47588 7.65395 7.94458 8.17525 8.60216 8.85621 10.05708 10.27134 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.002965 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.115456 B = 9441.981747 C =10012.596104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.254 3.746 10 C -0.251 4.251 11 C -0.005 4.005 12 C -0.014 4.014 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.103 4.103 17 C -0.030 4.030 18 Br -0.161 7.161 19 C -0.094 4.094 20 C -0.303 4.303 21 C 0.125 3.875 22 N -0.482 5.482 23 H 0.273 0.727 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -16.912 -2.141 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.156 4.156 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.464 4.464 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.274 4.274 11 C -0.011 4.011 12 C -0.014 4.014 13 C -0.124 4.124 14 C -0.137 4.137 15 C -0.136 4.136 16 C -0.104 4.104 17 C -0.144 4.144 18 Br -0.080 7.080 19 C -0.114 4.114 20 C -0.326 4.326 21 C -0.040 4.040 22 N -0.195 5.195 23 H 0.084 0.916 24 H 0.121 0.879 25 H 0.146 0.854 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.531 -16.085 -2.687 16.504 hybrid contribution 0.834 -0.078 0.263 0.878 sum 3.365 -16.164 -2.424 16.687 Atomic orbital electron populations 1.70130 1.07227 1.27857 1.28397 1.26068 0.94896 1.01111 0.93556 0.86313 0.80538 0.80875 0.79115 1.19430 1.20071 1.18483 1.19633 0.94672 0.89528 1.42521 0.89773 1.18556 0.88300 0.91661 0.88517 1.21868 0.98598 0.92899 1.14055 1.18573 0.93175 0.90634 0.98688 1.19050 0.92832 0.92956 0.96576 1.21415 0.94047 0.98148 0.98796 1.20998 0.99621 0.92297 1.00791 1.20869 0.92909 0.98298 1.01500 1.19355 0.93853 0.93356 1.03825 1.23548 1.03752 0.98670 0.88436 1.97417 1.96665 1.96132 1.17797 1.21107 1.00101 0.90916 0.99233 1.21331 0.93380 0.98284 1.19626 1.22462 0.98836 0.88705 0.94041 1.68715 1.07477 1.26545 1.16779 0.91555 0.87909 0.85375 0.86052 0.86443 0.87650 0.87507 0.85572 0.88518 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.91 11.49 55.55 0.64 -18.27 16 2 C 0.07 1.74 5.49 -17.34 -0.10 1.65 16 3 Si 0.91 18.36 29.56 -169.99 -5.03 13.33 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -11.41 9.14 -37.69 -0.34 -11.76 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.25 6.86 6.55 -85.02 -0.56 6.31 16 10 C -0.25 -6.03 9.22 -38.34 -0.35 -6.38 16 11 C 0.00 -0.10 5.91 -104.64 -0.62 -0.72 16 12 C -0.01 -0.26 5.88 -104.90 -0.62 -0.87 16 13 C -0.11 -1.71 9.45 -39.26 -0.37 -2.08 16 14 C -0.12 -1.59 10.03 -39.63 -0.40 -1.99 16 15 C -0.12 -1.45 9.69 -39.52 -0.38 -1.83 16 16 C -0.10 -1.34 5.19 -104.67 -0.54 -1.89 16 17 C -0.03 -0.30 6.73 36.01 0.24 -0.06 16 18 Br -0.16 -1.86 33.92 -68.01 -2.31 -4.16 16 19 C -0.09 -1.49 9.10 -39.25 -0.36 -1.85 16 20 C -0.30 -6.66 9.52 -38.81 -0.37 -7.03 16 21 C 0.12 2.99 11.17 -17.60 -0.20 2.79 16 22 N -0.48 -13.21 7.88 -11.20 -0.09 -13.30 16 23 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 24 H 0.10 2.25 6.33 -52.49 -0.33 1.92 16 25 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.11 0.96 8.08 -51.92 -0.42 0.54 16 30 H 0.13 1.92 6.29 -52.49 -0.33 1.59 16 31 H 0.10 1.84 6.32 -52.49 -0.33 1.51 16 32 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -28.96 298.93 -10.22 -39.17 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.98 Total: 4.43 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -4.96 Total: -25.71 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.55 Total: -31.57 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 35 Polarization: -1.86 SS G_CDS: -2.31 Total: -4.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.96 -10.22 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243927583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.656 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds