Wall clock time and date at job start Tue Mar 31 2020 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48501 * 109.47537 * 274.98620 * 3 2 1 5 5 H 1.48497 * 109.46948 * 34.99303 * 3 2 1 6 6 H 1.48502 * 109.46948 * 154.98618 * 3 2 1 7 7 C 1.40037 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00427 * 186.27800 * 7 2 1 9 9 C 1.41433 * 119.99535 * 6.28170 * 7 2 1 10 10 C 1.40477 * 119.77256 * 173.68122 * 9 7 2 11 11 C 1.39306 * 118.83360 * 179.97438 * 10 9 7 12 12 C 1.48389 * 120.82102 * 179.97438 * 11 10 9 13 13 C 1.39356 * 120.12289 * 359.74422 * 12 11 10 14 14 C 1.37993 * 119.87793 * 179.76898 * 13 12 11 15 15 C 1.38339 * 120.11963 * 0.50931 * 14 13 12 16 16 C 1.38294 * 120.24843 * 359.74761 * 15 14 13 17 17 C 1.50706 * 119.94267 * 180.02562 * 16 15 14 18 18 Br 1.96598 * 109.47278 * 269.97789 * 17 16 15 19 19 C 1.38044 * 120.12118 * 359.97438 * 16 15 14 20 20 C 1.40041 * 118.35730 * 0.02562 * 11 10 9 21 21 C 1.38504 * 119.42414 * 0.02562 * 20 11 10 22 22 N 1.31479 * 121.14425 * 359.97438 * 21 20 11 23 23 H 0.96995 * 120.00042 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.58730 * 0.02562 * 10 9 7 25 25 H 1.08009 * 120.06016 * 0.02562 * 13 12 11 26 26 H 1.07996 * 119.93785 * 180.23735 * 14 13 12 27 27 H 1.08005 * 119.87833 * 179.71836 * 15 14 13 28 28 H 1.08996 * 109.46795 * 29.98213 * 17 16 15 29 29 H 1.09010 * 109.46839 * 149.97652 * 17 16 15 30 30 H 1.07999 * 120.06599 * 179.97438 * 19 16 15 31 31 H 1.08002 * 120.28704 * 179.97438 * 20 11 10 32 32 H 1.08004 * 119.43056 * 179.72533 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3947 5 1 1.4955 2.6198 0.8029 6 1 3.5876 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 0.1017 9 6 1.3068 -2.4338 -0.1351 10 6 2.0202 -3.6365 -0.2689 11 6 1.3101 -4.8279 -0.3996 12 6 2.0190 -6.1235 -0.5442 13 6 3.4120 -6.1610 -0.5560 14 6 4.0660 -7.3692 -0.6859 15 6 3.3414 -8.5405 -0.8148 16 6 1.9588 -8.5086 -0.8091 17 6 1.1762 -9.7889 -0.9495 18 35 0.8324 -10.1415 -2.8528 19 6 1.2942 -7.3062 -0.6740 20 6 -0.0891 -4.7725 -0.3923 21 6 -0.7209 -3.5473 -0.2572 22 7 -0.0296 -2.4356 -0.1353 23 1 -0.4850 0.8400 0.0004 24 1 3.1002 -3.6377 -0.2695 25 1 3.9787 -5.2467 -0.4595 26 1 5.1455 -7.3998 -0.6913 27 1 3.8572 -9.4835 -0.9209 28 1 1.7491 -10.6132 -0.5249 29 1 0.2279 -9.6949 -0.4202 30 1 0.2145 -7.2823 -0.6700 31 1 -0.6706 -5.6771 -0.4919 32 1 -1.8001 -3.5040 -0.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243927583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:40 Heat of formation + Delta-G solvation = 33.393769 kcal Electronic energy + Delta-G solvation = -17148.499185 eV Core-core repulsion = 14311.809722 eV Total energy + Delta-G solvation = -2836.689462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 317.011 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73971 -39.49924 -35.66562 -34.63785 -33.34827 -32.01041 -30.95980 -30.11984 -27.80410 -26.82263 -24.58010 -23.73977 -22.21391 -21.49348 -19.13105 -17.92373 -17.28378 -16.53427 -16.28295 -15.97985 -15.52991 -15.22884 -14.79504 -14.54603 -14.24544 -14.12011 -13.85207 -13.72485 -13.14600 -12.98816 -12.82292 -12.78495 -12.41901 -12.15340 -11.85832 -11.56900 -11.28805 -10.85977 -10.76532 -10.70270 -9.70395 -9.61308 -9.52467 -9.04852 -8.31885 -6.54059 -0.08343 0.19347 0.87931 1.04461 1.39952 1.43750 1.54653 1.58620 2.22156 2.77897 3.03020 3.51319 3.73643 3.92193 3.94147 4.13023 4.17916 4.28669 4.43448 4.50193 4.60773 4.63798 4.79276 4.96049 4.98483 5.11479 5.21391 5.38603 5.49175 5.51368 5.54875 5.64032 5.92111 6.04578 6.14794 6.26996 6.71379 6.93223 8.16659 8.44116 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.002965 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.115456 B = 9441.981747 C =10012.596104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.024 3.976 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.089 0.911 9 C 0.223 3.777 10 C -0.275 4.275 11 C 0.000 4.000 12 C -0.053 4.053 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.102 4.102 16 C -0.100 4.100 17 C -0.025 4.025 18 Br -0.174 7.174 19 C -0.099 4.099 20 C -0.299 4.299 21 C 0.104 3.896 22 N -0.522 5.522 23 H 0.279 0.721 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.136 0.864 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -19.332 -2.262 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.503 4.503 8 H 0.107 0.893 9 C 0.099 3.901 10 C -0.298 4.298 11 C -0.006 4.006 12 C -0.053 4.053 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.121 4.121 16 C -0.101 4.101 17 C -0.139 4.139 18 Br -0.094 7.094 19 C -0.118 4.118 20 C -0.322 4.322 21 C -0.059 4.059 22 N -0.236 5.236 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.138 0.862 26 H 0.170 0.830 27 H 0.173 0.827 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.857 -18.536 -2.808 19.140 hybrid contribution 0.430 0.374 0.286 0.638 sum 4.287 -18.161 -2.523 18.830 Atomic orbital electron populations 1.70231 1.08971 1.29146 1.29645 1.27014 0.95719 1.04610 0.92407 0.85113 0.79148 0.75666 0.79267 1.18904 1.19162 1.17675 1.19996 0.95181 0.90580 1.44504 0.89271 1.18998 0.88795 0.93111 0.89235 1.21996 0.99225 0.93067 1.15471 1.18993 0.93460 0.92010 0.96126 1.18962 0.93808 0.91973 1.00531 1.21494 0.93397 0.99369 0.99409 1.21338 1.01277 0.91320 0.99410 1.21363 0.92744 0.99439 0.98509 1.19623 0.94538 0.93521 1.02368 1.23678 1.04612 0.98040 0.87596 1.97439 1.96745 1.96053 1.19151 1.21177 1.00215 0.91152 0.99230 1.21666 0.93893 0.98667 1.17930 1.22910 0.99892 0.89009 0.94133 1.68650 1.08073 1.28333 1.18554 0.91024 0.86992 0.86243 0.83002 0.82729 0.84557 0.86255 0.85508 0.85487 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.78 11.49 21.84 0.25 -41.53 16 2 C 0.02 1.24 5.49 85.29 0.47 1.71 16 3 Si 0.99 38.57 29.56 68.60 2.03 40.60 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.47 -26.10 9.14 23.49 0.21 -25.89 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.22 12.71 6.55 40.20 0.26 12.97 16 10 C -0.28 -13.81 9.22 23.07 0.21 -13.60 16 11 C 0.00 0.01 5.91 -19.88 -0.12 -0.10 16 12 C -0.05 -1.90 5.88 -20.04 -0.12 -2.02 16 13 C -0.12 -3.72 9.45 22.48 0.21 -3.51 16 14 C -0.12 -2.71 10.03 22.24 0.22 -2.49 16 15 C -0.10 -2.07 9.69 22.31 0.22 -1.85 16 16 C -0.10 -2.24 5.19 -19.90 -0.10 -2.34 16 17 C -0.03 -0.40 6.73 71.24 0.48 0.07 16 18 Br -0.17 -3.52 33.92 -20.37 -0.69 -4.21 16 19 C -0.10 -2.91 9.10 22.49 0.20 -2.71 16 20 C -0.30 -13.26 9.52 22.77 0.22 -13.05 16 21 C 0.10 5.16 11.17 84.81 0.95 6.10 16 22 N -0.52 -30.01 7.88 -189.36 -1.49 -31.51 16 23 H 0.28 13.85 8.29 -92.71 -0.77 13.08 16 24 H 0.11 5.18 6.33 -2.91 -0.02 5.16 16 25 H 0.12 3.86 6.29 -2.91 -0.02 3.84 16 26 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.14 1.40 8.08 -2.39 -0.02 1.38 16 29 H 0.12 1.67 8.08 -2.38 -0.02 1.65 16 30 H 0.13 3.62 6.29 -2.91 -0.02 3.60 16 31 H 0.13 4.73 6.32 -2.91 -0.02 4.71 16 32 H 0.14 6.04 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -66.51 298.93 4.56 -61.95 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.15 Total: 21.39 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 3.32 Total: -46.68 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.24 Total: -73.03 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 35 Polarization: -3.52 SS G_CDS: -0.69 Total: -4.21 kcal Total: -66.51 4.56 -61.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243927583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.341 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds