Wall clock time and date at job start Tue Mar 31 2020 11:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39585 * 120.45898 * 307.83604 * 3 2 1 5 5 C 1.37708 * 120.18828 * 179.97438 * 4 3 2 6 6 C 1.39817 * 121.16989 * 359.97438 * 5 4 3 7 7 C 1.48310 * 119.53879 * 180.02562 * 6 5 4 8 8 C 1.39404 * 120.12298 * 310.00093 * 7 6 5 9 9 C 1.37980 * 119.91261 * 179.97438 * 8 7 6 10 10 C 1.38346 * 120.16232 * 359.97438 * 9 8 7 11 11 C 1.38383 * 120.25960 * 0.04004 * 10 9 8 12 12 Cl 1.73599 * 119.96174 * 179.97438 * 11 10 9 13 13 C 1.38281 * 120.08156 * 359.70392 * 11 10 9 14 14 Cl 1.73595 * 120.08318 * 180.29876 * 13 11 10 15 15 C 1.38615 * 120.92829 * 0.02850 * 6 5 4 16 16 C 1.40597 * 119.73314 * 359.68465 * 15 6 5 17 17 C 1.40838 * 120.55819 * 180.30430 * 16 15 6 18 18 H 1.08004 * 120.00520 * 155.33071 * 17 16 15 19 19 C 1.40227 * 119.99931 * 335.33698 * 17 16 15 20 20 N 1.30665 * 120.00102 * 342.48952 * 19 17 16 21 21 Si 1.86796 * 120.00431 * 162.48984 * 19 17 16 22 22 H 1.48497 * 109.47336 * 89.99406 * 21 19 17 23 23 H 1.48499 * 109.47610 * 209.99819 * 21 19 17 24 24 H 1.48505 * 109.46957 * 329.99592 * 21 19 17 25 25 H 1.07998 * 119.90289 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.41417 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.04445 * 359.95967 * 8 7 6 28 28 H 1.08000 * 119.91972 * 179.97438 * 9 8 7 29 29 H 1.08004 * 119.87297 * 180.02562 * 10 9 8 30 30 H 1.07996 * 120.13261 * 180.02562 * 15 6 5 31 31 H 0.96998 * 120.00342 * 185.04759 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.7371 0.9503 5 6 4.6530 -0.7329 0.9448 6 6 5.3707 0.0025 -0.0034 7 6 6.8533 -0.0193 0.0237 8 6 7.5350 0.2251 1.2150 9 6 8.9144 0.2032 1.2354 10 6 9.6227 -0.0612 0.0767 11 6 8.9531 -0.3045 -1.1097 12 17 9.8495 -0.6349 -2.5591 13 6 7.5707 -0.2904 -1.1409 14 17 6.7306 -0.6032 -2.6274 15 6 4.7159 0.7517 -0.9684 16 6 3.3104 0.7702 -1.0021 17 6 2.6274 1.5203 -1.9790 18 1 1.6238 1.2446 -2.2676 19 6 3.2503 2.6252 -2.5769 20 7 4.2961 3.1696 -2.0136 21 14 2.5852 3.3189 -4.1787 22 1 1.5725 4.3639 -3.8829 23 1 3.6983 3.9153 -4.9600 24 1 1.9559 2.2287 -4.9667 25 1 2.7421 -1.3135 1.6913 26 1 5.1881 -1.3085 1.6855 27 1 6.9840 0.4315 2.1206 28 1 9.4426 0.3929 2.1581 29 1 10.7024 -0.0776 0.0981 30 1 5.2830 1.3146 -1.6949 31 1 4.6827 3.9772 -2.3868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245098661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:51 Heat of formation + Delta-G solvation = 46.008310 kcal Electronic energy + Delta-G solvation = -20330.106261 eV Core-core repulsion = 17013.267562 eV Total energy + Delta-G solvation = -3316.838699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.40203 -37.59043 -36.39576 -36.08220 -35.13816 -34.18440 -31.98163 -30.50578 -29.95737 -28.55895 -25.83675 -23.53684 -22.62000 -21.13833 -20.86173 -17.88066 -17.37166 -16.81717 -15.82175 -15.58734 -15.18396 -14.26484 -14.18444 -13.99700 -13.63637 -13.36218 -12.92990 -12.71043 -12.49484 -11.87884 -11.78972 -11.71685 -11.68017 -11.46885 -11.44422 -11.23716 -11.11447 -10.96801 -10.85296 -10.61686 -10.50098 -9.98568 -9.80421 -9.55146 -8.76767 -8.52991 -7.77900 -7.44760 -7.16303 -4.74594 1.10058 1.15506 2.02132 2.14059 2.52992 2.63421 2.90959 2.94660 3.03551 3.61571 3.67249 3.90065 4.11323 4.42513 4.76617 5.00100 5.22532 5.27801 5.33705 5.42793 5.55967 5.78735 5.96959 6.08043 6.26875 6.31094 6.44365 6.67112 6.73100 6.79861 6.95241 7.12940 7.42095 7.63913 7.67003 7.81949 8.14981 8.39434 8.49369 8.80605 9.72211 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.005353 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.186307 B = 5229.661732 C = 6563.089983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.300 3.700 3 C -0.184 4.184 4 C -0.029 4.029 5 C -0.230 4.230 6 C -0.036 4.036 7 C 0.007 3.993 8 C -0.097 4.097 9 C -0.106 4.106 10 C -0.117 4.117 11 C -0.031 4.031 12 Cl -0.063 7.063 13 C -0.028 4.028 14 Cl -0.036 7.036 15 C -0.122 4.122 16 C 0.146 3.854 17 C -0.425 4.425 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.761 5.761 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.255 1.255 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.352 -2.743 1.722 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.010 4.010 3 C -0.190 4.190 4 C -0.050 4.050 5 C -0.249 4.249 6 C -0.037 4.037 7 C 0.006 3.994 8 C -0.116 4.116 9 C -0.125 4.125 10 C -0.136 4.136 11 C -0.058 4.058 12 Cl -0.034 7.034 13 C -0.055 4.055 14 Cl -0.007 7.007 15 C -0.141 4.141 16 C 0.140 3.860 17 C -0.452 4.452 18 H 0.105 0.895 19 C -0.147 4.147 20 N -0.383 5.383 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.178 1.178 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.157 0.843 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.807 -2.632 1.389 12.176 hybrid contribution 0.302 0.420 -0.890 1.030 sum 12.109 -2.212 0.498 12.319 Atomic orbital electron populations 1.81022 1.12761 1.13440 1.11714 1.25803 0.92741 0.91085 0.91346 1.16979 0.83236 1.14907 1.03917 1.20335 0.93463 0.95787 0.95421 1.20000 0.93012 1.08476 1.03441 1.18326 0.88290 0.99250 0.97812 1.18990 0.94372 0.95394 0.90632 1.21371 0.93838 0.98723 0.97632 1.21077 0.94064 0.99541 0.97790 1.20923 1.00273 1.01751 0.90642 1.20664 0.90155 1.05837 0.89158 1.98362 1.74605 1.93753 1.36639 1.20928 0.90167 1.04726 0.89702 1.98399 1.77511 1.93546 1.31240 1.21495 0.93723 1.00165 0.98684 1.18324 0.91103 0.88171 0.88380 1.19778 1.01387 1.08591 1.15480 0.89456 1.26098 0.93496 0.96552 0.98528 1.69663 1.16741 1.15454 1.36413 0.86205 0.79716 0.80003 0.80673 1.18860 1.19390 1.17813 0.88126 0.88316 0.84346 0.84824 0.84710 0.84678 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.22 18.54 41.84 0.78 -11.45 16 2 C 0.30 6.97 14.29 -22.47 -0.32 6.65 16 3 C -0.18 -4.15 5.95 -104.12 -0.62 -4.77 16 4 C -0.03 -0.58 9.74 -39.27 -0.38 -0.96 16 5 C -0.23 -4.31 9.41 -39.18 -0.37 -4.68 16 6 C -0.04 -0.70 5.11 -105.02 -0.54 -1.24 16 7 C 0.01 0.12 5.45 -104.87 -0.57 -0.45 16 8 C -0.10 -1.36 9.46 -39.24 -0.37 -1.73 16 9 C -0.11 -1.22 10.03 -39.64 -0.40 -1.61 16 10 C -0.12 -1.40 9.82 -39.49 -0.39 -1.79 16 11 C -0.03 -0.44 6.32 -39.51 -0.25 -0.69 16 12 Cl -0.06 -0.84 27.95 -51.86 -1.45 -2.28 16 13 C -0.03 -0.46 6.27 -39.12 -0.25 -0.71 16 14 Cl -0.04 -0.65 24.97 -51.86 -1.29 -1.94 16 15 C -0.12 -2.71 6.79 -38.55 -0.26 -2.97 16 16 C 0.15 3.46 5.73 -104.68 -0.60 2.86 16 17 C -0.43 -10.28 8.57 -37.85 -0.32 -10.60 16 18 H 0.09 2.14 7.38 -52.48 -0.39 1.76 16 19 C 0.08 1.73 5.15 -17.30 -0.09 1.64 16 20 N -0.76 -17.28 10.96 55.56 0.61 -16.67 16 21 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.25 -4.89 7.11 56.52 0.40 -4.49 16 25 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.10 1.60 8.00 -52.49 -0.42 1.18 16 27 H 0.14 1.74 8.03 -52.49 -0.42 1.32 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.14 3.11 5.26 -52.49 -0.28 2.84 16 31 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -25.16 312.56 -9.31 -34.47 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -1.91 Total: 1.95 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -5.73 Total: -21.05 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 1.38 Total: -28.11 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -2.74 Total: -4.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -25.16 -9.31 -34.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245098661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.480 kcal (2) G-P(sol) polarization free energy of solvation -25.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds