Wall clock time and date at job start Tue Mar 31 2020 11:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39585 * 120.45898 * 307.83604 * 3 2 1 5 5 C 1.37708 * 120.18828 * 179.97438 * 4 3 2 6 6 C 1.39817 * 121.16989 * 359.97438 * 5 4 3 7 7 C 1.48310 * 119.53879 * 180.02562 * 6 5 4 8 8 C 1.39404 * 120.12298 * 310.00093 * 7 6 5 9 9 C 1.37980 * 119.91261 * 179.97438 * 8 7 6 10 10 C 1.38346 * 120.16232 * 359.97438 * 9 8 7 11 11 C 1.38383 * 120.25960 * 0.04004 * 10 9 8 12 12 Cl 1.73599 * 119.96174 * 179.97438 * 11 10 9 13 13 C 1.38281 * 120.08156 * 359.70392 * 11 10 9 14 14 Cl 1.73595 * 120.08318 * 180.29876 * 13 11 10 15 15 C 1.38615 * 120.92829 * 0.02850 * 6 5 4 16 16 C 1.40597 * 119.73314 * 359.68465 * 15 6 5 17 17 C 1.40838 * 120.55819 * 180.30430 * 16 15 6 18 18 H 1.08004 * 120.00520 * 155.33071 * 17 16 15 19 19 C 1.40227 * 119.99931 * 335.33698 * 17 16 15 20 20 N 1.30665 * 120.00102 * 342.48952 * 19 17 16 21 21 Si 1.86796 * 120.00431 * 162.48984 * 19 17 16 22 22 H 1.48497 * 109.47336 * 89.99406 * 21 19 17 23 23 H 1.48499 * 109.47610 * 209.99819 * 21 19 17 24 24 H 1.48505 * 109.46957 * 329.99592 * 21 19 17 25 25 H 1.07998 * 119.90289 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.41417 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.04445 * 359.95967 * 8 7 6 28 28 H 1.08000 * 119.91972 * 179.97438 * 9 8 7 29 29 H 1.08004 * 119.87297 * 180.02562 * 10 9 8 30 30 H 1.07996 * 120.13261 * 180.02562 * 15 6 5 31 31 H 0.96998 * 120.00342 * 185.04759 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.7371 0.9503 5 6 4.6530 -0.7329 0.9448 6 6 5.3707 0.0025 -0.0034 7 6 6.8533 -0.0193 0.0237 8 6 7.5350 0.2251 1.2150 9 6 8.9144 0.2032 1.2354 10 6 9.6227 -0.0612 0.0767 11 6 8.9531 -0.3045 -1.1097 12 17 9.8495 -0.6349 -2.5591 13 6 7.5707 -0.2904 -1.1409 14 17 6.7306 -0.6032 -2.6274 15 6 4.7159 0.7517 -0.9684 16 6 3.3104 0.7702 -1.0021 17 6 2.6274 1.5203 -1.9790 18 1 1.6238 1.2446 -2.2676 19 6 3.2503 2.6252 -2.5769 20 7 4.2961 3.1696 -2.0136 21 14 2.5852 3.3189 -4.1787 22 1 1.5725 4.3639 -3.8829 23 1 3.6983 3.9153 -4.9600 24 1 1.9559 2.2287 -4.9667 25 1 2.7421 -1.3135 1.6913 26 1 5.1881 -1.3085 1.6855 27 1 6.9840 0.4315 2.1206 28 1 9.4426 0.3929 2.1581 29 1 10.7024 -0.0776 0.0981 30 1 5.2830 1.3146 -1.6949 31 1 4.6827 3.9772 -2.3868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245098661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:49 Heat of formation + Delta-G solvation = 37.030488 kcal Electronic energy + Delta-G solvation = -20330.495568 eV Core-core repulsion = 17013.267562 eV Total energy + Delta-G solvation = -3317.228006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59589 -39.11769 -37.50712 -37.34037 -36.91743 -35.82262 -33.36425 -31.76889 -31.41973 -29.95212 -27.52841 -24.90204 -23.78959 -22.63704 -22.27871 -19.50635 -18.91537 -18.15485 -17.19028 -16.73502 -16.55935 -15.71608 -15.58028 -15.11624 -14.99857 -14.83361 -14.50903 -14.47606 -13.94746 -13.50309 -13.40714 -13.13785 -12.96769 -12.89233 -12.81230 -12.66537 -12.48058 -12.26676 -12.16098 -12.14280 -11.77193 -11.55541 -11.34767 -11.17193 -10.02176 -9.63810 -9.44371 -8.98865 -8.81517 -6.50815 -0.13541 0.07918 0.58844 0.93511 1.03359 1.33225 1.35898 1.43485 1.49507 2.05291 2.10404 2.31376 2.63806 2.67653 3.58681 3.61229 3.72305 4.06464 4.12566 4.33511 4.41446 4.46225 4.65530 4.84234 4.97624 5.03092 5.14326 5.27267 5.30587 5.33597 5.52672 5.70722 5.82922 5.96738 6.07154 6.15766 6.45119 6.67218 6.80201 6.98725 8.08132 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.005353 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.186307 B = 5229.661732 C = 6563.089983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.305 3.695 3 C -0.207 4.207 4 C -0.029 4.029 5 C -0.218 4.218 6 C -0.025 4.025 7 C -0.026 4.026 8 C -0.096 4.096 9 C -0.089 4.089 10 C -0.103 4.103 11 C -0.043 4.043 12 Cl -0.058 7.058 13 C -0.046 4.046 14 Cl -0.061 7.061 15 C -0.142 4.142 16 C 0.126 3.874 17 C -0.463 4.463 18 H 0.068 0.932 19 C 0.049 3.951 20 N -0.782 5.782 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.255 1.255 24 H -0.263 1.263 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.169 0.831 30 H 0.123 0.877 31 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.183 -2.998 3.501 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.003 4.003 3 C -0.213 4.213 4 C -0.049 4.049 5 C -0.237 4.237 6 C -0.026 4.026 7 C -0.027 4.027 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.121 4.121 11 C -0.070 4.070 12 Cl -0.029 7.029 13 C -0.073 4.073 14 Cl -0.032 7.032 15 C -0.161 4.161 16 C 0.120 3.880 17 C -0.491 4.491 18 H 0.087 0.913 19 C -0.172 4.172 20 N -0.405 5.405 21 Si 0.786 3.214 22 H -0.185 1.185 23 H -0.178 1.178 24 H -0.187 1.187 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.172 0.828 28 H 0.197 0.803 29 H 0.187 0.813 30 H 0.141 0.859 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.648 -2.893 3.182 15.266 hybrid contribution -0.364 0.402 -1.288 1.397 sum 14.284 -2.491 1.894 14.623 Atomic orbital electron populations 1.80994 1.13256 1.14419 1.12570 1.26047 0.92999 0.90527 0.90766 1.17245 0.82924 1.16147 1.05021 1.20666 0.94096 0.95131 0.95003 1.20430 0.92746 1.07269 1.03243 1.18632 0.90342 0.97275 0.96380 1.18975 0.92927 0.98561 0.92287 1.21629 0.95204 0.97820 0.96743 1.21554 0.92982 0.96921 0.99226 1.21421 1.02006 0.99149 0.89565 1.20878 0.89466 1.06254 0.90400 1.98364 1.74135 1.93737 1.36705 1.21076 0.91152 1.06334 0.88770 1.98386 1.78183 1.93831 1.32823 1.21379 0.93027 1.01719 0.99998 1.18618 0.92148 0.88507 0.88697 1.19808 1.01200 1.10460 1.17633 0.91336 1.26641 0.93733 0.96272 1.00601 1.69672 1.17433 1.15979 1.37429 0.85414 0.79485 0.79066 0.77439 1.18542 1.17847 1.18667 0.85418 0.84850 0.82827 0.80343 0.81350 0.85943 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.13 18.54 19.00 0.35 -25.77 16 2 C 0.31 14.57 14.29 88.33 1.26 15.83 16 3 C -0.21 -9.51 5.95 -19.54 -0.12 -9.63 16 4 C -0.03 -1.09 9.74 22.47 0.22 -0.87 16 5 C -0.22 -7.73 9.41 22.53 0.21 -7.51 16 6 C -0.03 -0.97 5.11 -20.12 -0.10 -1.08 16 7 C -0.03 -0.86 5.45 -20.03 -0.11 -0.97 16 8 C -0.10 -2.31 9.46 22.49 0.21 -2.10 16 9 C -0.09 -1.56 10.03 22.23 0.22 -1.34 16 10 C -0.10 -2.00 9.82 22.33 0.22 -1.78 16 11 C -0.04 -1.13 6.32 22.31 0.14 -0.99 16 12 Cl -0.06 -1.46 27.95 -2.72 -0.08 -1.54 16 13 C -0.05 -1.49 6.27 22.57 0.14 -1.35 16 14 Cl -0.06 -2.23 24.97 -2.72 -0.07 -2.29 16 15 C -0.14 -6.47 6.79 22.94 0.16 -6.32 16 16 C 0.13 6.19 5.73 -19.90 -0.11 6.08 16 17 C -0.46 -23.61 8.57 23.39 0.20 -23.41 16 18 H 0.07 3.60 7.38 -2.91 -0.02 3.58 16 19 C 0.05 2.27 5.15 85.35 0.44 2.71 16 20 N -0.78 -36.58 10.96 21.87 0.24 -36.34 16 21 Si 0.97 36.48 29.60 68.60 2.03 38.51 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 26 H 0.13 3.80 8.00 -2.91 -0.02 3.78 16 27 H 0.15 3.19 8.03 -2.91 -0.02 3.16 16 28 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.12 5.86 5.26 -2.91 -0.02 5.84 16 31 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 Total: -1.00 -57.40 312.56 6.66 -50.74 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.20 Total: 9.42 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.98 Total: -32.72 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.59 Total: -62.12 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 17 Polarization: -3.69 SS G_CDS: -0.14 Total: -3.83 kcal Total: -57.40 6.66 -50.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245098661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.773 kcal (2) G-P(sol) polarization free energy of solvation -57.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds