Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47375 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47198 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46868 * 329.99673 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 C 1.33388 * 125.20048 * 90.00021 * 16 15 14 18 18 C 1.38468 * 114.91403 * 180.02562 * 17 16 15 19 19 Br 1.89098 * 122.54381 * 179.97438 * 18 17 16 20 20 C 1.33424 * 114.90561 * 359.97438 * 18 17 16 21 21 S 1.75882 * 125.19192 * 269.69758 * 16 15 14 22 22 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 23 23 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 24 24 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 25 25 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 26 26 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 27 27 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 28 28 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 31 31 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 32 32 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 33 33 H 1.08000 * 122.54127 * 0.02562 * 17 16 15 34 34 H 1.07999 * 125.20381 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 2.2395 3.5998 -4.4135 11 1 1.0977 1.5787 -5.1151 12 1 -0.0490 3.1970 -3.7198 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 6 3.9641 3.2172 4.9869 18 6 4.6507 2.8182 6.1213 19 35 6.2272 3.6795 6.7118 20 6 4.1154 1.7799 6.7659 21 16 2.6603 1.2531 5.9300 22 1 -0.3633 -1.0246 -0.0790 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 0.4439 0.9269 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.8708 0.2777 -3.4810 28 1 1.4286 3.1225 1.0208 29 1 2.4321 0.8517 2.6044 30 1 3.4529 2.2115 2.0779 31 1 1.9635 3.7926 3.2741 32 1 0.9428 2.4328 3.8007 33 1 4.2881 4.0442 4.3725 34 1 4.5122 1.3341 7.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = 20.206619 kcal Electronic energy + Delta-G solvation = -16168.613913 eV Core-core repulsion = 13466.796564 eV Total energy + Delta-G solvation = -2701.817349 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.32625 -36.48393 -33.83952 -31.88959 -30.85271 -29.87731 -27.61641 -25.81608 -23.55373 -22.98252 -21.49810 -19.32479 -19.03520 -17.31921 -16.36473 -15.65513 -14.94007 -14.60171 -14.11735 -13.63933 -13.39219 -13.22883 -13.04553 -12.51743 -12.30728 -12.06761 -11.80404 -11.42989 -11.12661 -10.94208 -10.82439 -10.77973 -10.64387 -10.39955 -10.39045 -10.02941 -9.72577 -9.39005 -8.82825 -8.74339 -8.52662 -8.47413 -7.28532 -6.02999 -4.08863 0.72157 0.99730 1.57891 2.16564 2.33368 3.28265 3.35588 3.38640 4.38425 4.61129 4.90435 5.18254 5.28151 5.28612 5.44055 5.70293 5.70535 5.87834 6.01047 6.07366 6.38803 6.43046 6.55065 6.67737 6.84893 7.22548 7.30131 7.48116 7.73040 7.77828 7.83404 8.25040 8.36044 8.64201 9.00130 9.56072 11.02864 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.002854 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.547200 B = 9808.166624 C =10559.066285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.067 3.933 15 C -0.052 4.052 16 C -0.146 4.146 17 C -0.134 4.134 18 C -0.092 4.092 19 Br -0.038 7.038 20 C -0.199 4.199 21 S 0.145 5.855 22 H 0.013 0.987 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 4.031 20.544 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.091 4.091 16 C -0.265 4.265 17 C -0.164 4.164 18 C -0.185 4.185 19 Br 0.046 6.954 20 C -0.337 4.337 21 S 0.408 5.592 22 H 0.032 0.968 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.165 0.835 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.744 2.567 21.035 21.520 hybrid contribution 1.318 1.803 -1.410 2.641 sum 5.062 4.370 19.625 20.733 Atomic orbital electron populations 1.21447 0.97499 0.97418 1.01295 1.21434 0.95032 0.98253 0.99436 1.19145 0.92969 0.91491 0.85539 0.98183 1.21184 1.31708 1.11990 0.90332 0.92269 1.24889 0.95044 0.94981 0.98941 1.69886 1.36633 1.22663 1.23520 0.86577 0.79241 0.79344 0.82730 1.20812 1.21235 1.19836 1.60736 1.48812 1.15843 1.06277 1.21898 0.94577 0.99119 0.90745 1.20298 0.96945 1.01616 0.90266 1.24633 1.00931 0.99495 1.01402 1.19898 0.95674 1.03280 0.97532 1.20659 0.97457 1.00381 1.00004 1.96686 1.31032 1.78689 1.89015 1.25646 1.01170 1.01371 1.05548 1.84467 1.22875 1.33286 1.18551 0.96788 0.92480 0.94023 0.97245 0.89523 0.92937 0.85273 0.91751 0.95871 0.89939 0.89783 0.83461 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.29 16 2 C -0.10 -2.48 5.59 -26.73 -0.15 -2.63 16 3 C 0.22 5.28 2.30 -68.86 -0.16 5.12 16 4 H 0.00 0.01 7.71 -51.93 -0.40 -0.39 16 5 C -0.51 -13.54 7.26 -34.44 -0.25 -13.79 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.69 -13.78 5.65 -107.95 -0.61 -14.39 16 14 C 0.07 1.15 5.52 -3.82 -0.02 1.13 16 15 C -0.05 -0.69 5.92 -27.88 -0.17 -0.85 16 16 C -0.15 -1.83 5.76 -36.00 -0.21 -2.03 16 17 C -0.13 -1.65 9.91 -41.19 -0.41 -2.06 16 18 C -0.09 -1.07 6.17 -41.18 -0.25 -1.32 16 19 Br -0.04 -0.40 33.87 -68.01 -2.30 -2.70 16 20 C -0.20 -2.08 11.05 29.05 0.32 -1.76 16 21 S 0.14 1.59 23.33 -107.50 -2.51 -0.91 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 24 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 25 H 0.01 0.20 7.61 -51.93 -0.39 -0.19 16 26 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 28 H 0.33 6.42 8.14 -39.30 -0.32 6.10 16 29 H 0.06 1.15 7.61 -51.93 -0.40 0.76 16 30 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -27.24 315.67 -10.75 -37.98 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.65 Total: 2.59 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.03 Total: -18.88 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.02 Total: -38.72 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.51 Total: -0.91 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.30 Total: -2.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.24 -10.75 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.187 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds