Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47375 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47198 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46868 * 329.99673 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 C 1.33388 * 125.20048 * 90.00021 * 16 15 14 18 18 C 1.38468 * 114.91403 * 180.02562 * 17 16 15 19 19 Br 1.89098 * 122.54381 * 179.97438 * 18 17 16 20 20 C 1.33424 * 114.90561 * 359.97438 * 18 17 16 21 21 S 1.75882 * 125.19192 * 269.69758 * 16 15 14 22 22 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 23 23 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 24 24 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 25 25 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 26 26 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 27 27 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 28 28 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 31 31 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 32 32 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 33 33 H 1.08000 * 122.54127 * 0.02562 * 17 16 15 34 34 H 1.07999 * 125.20381 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 2.2395 3.5998 -4.4135 11 1 1.0977 1.5787 -5.1151 12 1 -0.0490 3.1970 -3.7198 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 6 3.9641 3.2172 4.9869 18 6 4.6507 2.8182 6.1213 19 35 6.2272 3.6795 6.7118 20 6 4.1154 1.7799 6.7659 21 16 2.6603 1.2531 5.9300 22 1 -0.3633 -1.0246 -0.0790 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 0.4439 0.9269 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.8708 0.2777 -3.4810 28 1 1.4286 3.1225 1.0208 29 1 2.4321 0.8517 2.6044 30 1 3.4529 2.2115 2.0779 31 1 1.9635 3.7926 3.2741 32 1 0.9428 2.4328 3.8007 33 1 4.2881 4.0442 4.3725 34 1 4.5122 1.3341 7.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = 6.049197 kcal Electronic energy + Delta-G solvation = -16169.227825 eV Core-core repulsion = 13466.796564 eV Total energy + Delta-G solvation = -2702.431261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29835 -38.14695 -35.36197 -33.52894 -32.24075 -31.09184 -28.96873 -27.47226 -25.18409 -24.44629 -22.70568 -20.93214 -20.22234 -18.47782 -18.08431 -16.96278 -16.47436 -16.15203 -15.55008 -15.23259 -14.76219 -14.51831 -14.10354 -14.00475 -13.77760 -13.41440 -13.35720 -12.84946 -12.77138 -12.54107 -12.37804 -12.24021 -11.87538 -11.82870 -11.64898 -11.50282 -11.27191 -11.24043 -10.78032 -10.52130 -9.71591 -9.39287 -9.01839 -8.08457 -6.20954 -0.17284 0.14646 0.67376 1.30289 1.40954 1.43015 1.44982 1.54452 2.43761 3.20350 3.49401 3.92961 4.08874 4.19078 4.33136 4.40636 4.62639 4.71087 4.73892 4.80941 4.93100 4.98349 5.08388 5.10967 5.27009 5.32705 5.42918 5.57967 5.72831 5.83892 5.90734 6.29645 6.49197 6.80855 7.05283 7.48086 8.96655 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.002854 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.547200 B = 9808.166624 C =10559.066285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.221 3.779 4 H -0.038 1.038 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.037 4.037 16 C -0.168 4.168 17 C -0.135 4.135 18 C -0.112 4.112 19 Br -0.030 7.030 20 C -0.187 4.187 21 S 0.162 5.838 22 H 0.031 0.969 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.018 0.982 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 4.492 21.699 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.113 3.887 4 H -0.021 1.021 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.309 5.309 14 C -0.058 4.058 15 C -0.077 4.077 16 C -0.287 4.287 17 C -0.166 4.166 18 C -0.205 4.205 19 Br 0.053 6.947 20 C -0.326 4.326 21 S 0.426 5.574 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.019 3.040 22.209 22.619 hybrid contribution 1.603 1.639 -1.680 2.842 sum 4.622 4.678 20.530 21.557 Atomic orbital electron populations 1.21307 0.95746 0.98362 1.01003 1.21320 0.96474 0.97718 0.98350 1.18931 0.90611 0.92243 0.86947 1.02092 1.21474 1.31407 1.12037 0.91244 0.92111 1.25643 0.95257 0.95629 1.01810 1.70028 1.37750 1.23972 1.23991 0.85606 0.78938 0.78209 0.79191 1.20425 1.21241 1.19026 1.60636 1.49055 1.15846 1.05411 1.21862 0.93462 0.99387 0.91065 1.20078 0.97274 1.01370 0.88961 1.24537 1.01311 1.00827 1.02013 1.20027 0.95570 1.03193 0.97760 1.20747 0.98194 1.01233 1.00283 1.96687 1.30504 1.78649 1.88838 1.25987 1.00383 1.00454 1.05730 1.84399 1.22939 1.32318 1.17756 0.94961 0.94442 0.92723 0.96377 0.92523 0.93072 0.84771 0.92612 0.97289 0.88993 0.89119 0.83457 0.78818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.52 71.98 0.69 -3.95 16 2 C -0.10 -4.85 5.59 30.60 0.17 -4.67 16 3 C 0.22 10.97 2.30 44.17 0.10 11.07 16 4 H -0.04 -2.17 7.71 -2.39 -0.02 -2.19 16 5 C -0.52 -27.71 7.26 25.60 0.19 -27.53 16 6 H 0.06 3.14 7.60 -2.91 -0.02 3.11 16 7 C 0.02 0.85 5.30 84.65 0.45 1.30 16 8 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 9 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.68 -27.07 5.65 -495.44 -2.80 -29.87 16 14 C 0.07 2.46 5.52 86.30 0.48 2.94 16 15 C -0.04 -0.95 5.92 29.85 0.18 -0.78 16 16 C -0.17 -3.99 5.76 24.59 0.14 -3.85 16 17 C -0.14 -3.18 9.91 21.23 0.21 -2.97 16 18 C -0.11 -2.42 6.17 21.23 0.13 -2.29 16 19 Br -0.03 -0.59 33.87 -20.37 -0.69 -1.28 16 20 C -0.19 -3.51 11.05 66.73 0.74 -2.77 16 21 S 0.16 3.27 23.33 -56.49 -1.32 1.95 16 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.75 7.07 -2.39 -0.02 1.73 16 24 H 0.05 2.20 7.74 -2.39 -0.02 2.18 16 25 H 0.02 0.81 7.61 -2.39 -0.02 0.79 16 26 H 0.06 3.10 6.06 -2.39 -0.01 3.09 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.33 12.83 8.14 -89.70 -0.73 12.10 16 29 H 0.06 1.98 7.61 -2.39 -0.02 1.96 16 30 H 0.01 0.33 7.94 -2.39 -0.02 0.31 16 31 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -57.81 315.67 1.30 -56.51 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.37 Total: 13.54 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.47 Total: -33.50 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.56 Total: -82.11 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.95 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -0.69 Total: -1.28 kcal Total: -57.81 1.30 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.562 kcal (2) G-P(sol) polarization free energy of solvation -57.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds