Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47360 * 2 1 4 4 H 1.08998 * 109.46828 * 174.08426 * 3 2 1 5 5 C 1.50701 * 109.46630 * 54.09144 * 3 2 1 6 6 H 1.08001 * 119.99669 * 239.99581 * 5 3 2 7 7 C 1.37874 * 120.00375 * 59.99829 * 5 3 2 8 8 N 1.31513 * 120.00189 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46674 * 60.00469 * 9 7 5 11 11 H 1.48499 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47325 * 300.00501 * 9 7 5 13 13 N 1.46890 * 109.46942 * 294.09176 * 3 2 1 14 14 C 1.46900 * 110.99814 * 275.79538 * 13 3 2 15 15 C 1.53007 * 109.46967 * 176.17901 * 14 13 3 16 16 C 1.50701 * 109.47003 * 180.02562 * 15 14 13 17 17 C 1.33400 * 125.20316 * 90.02504 * 16 15 14 18 18 C 1.38463 * 114.91792 * 179.77381 * 17 16 15 19 19 Br 1.89095 * 122.54969 * 180.25406 * 18 17 16 20 20 C 1.33434 * 114.90118 * 0.42569 * 18 17 16 21 21 S 1.75881 * 109.60016 * 359.59896 * 20 18 17 22 22 H 1.09002 * 109.47138 * 178.55080 * 1 2 3 23 23 H 1.08997 * 109.47314 * 298.55352 * 1 2 3 24 24 H 1.09003 * 109.46896 * 58.55070 * 1 2 3 25 25 H 1.09001 * 109.47072 * 239.99891 * 2 1 3 26 26 H 1.09006 * 109.47274 * 120.00045 * 2 1 3 27 27 H 0.96991 * 120.00621 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00595 * 39.74912 * 13 3 2 29 29 H 1.09002 * 109.47085 * 56.18596 * 14 13 3 30 30 H 1.08995 * 109.47662 * 296.17750 * 14 13 3 31 31 H 1.08998 * 109.47249 * 60.00004 * 15 14 13 32 32 H 1.08998 * 109.47047 * 299.99653 * 15 14 13 33 33 H 1.07995 * 122.53698 * 359.97438 * 17 16 15 34 34 H 1.08001 * 125.20261 * 179.86252 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4218 2.1938 1.1508 6 1 0.8150 3.0670 0.9619 7 6 1.6309 1.7665 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8651 2.6983 3.8714 10 1 -0.6129 2.6963 3.7274 11 1 1.2393 2.0413 5.1496 12 1 1.3606 4.0981 3.8713 13 7 1.6703 2.0926 -1.2643 14 6 2.6509 1.7935 -2.3164 15 6 2.1837 2.4067 -3.6381 16 6 3.1893 2.0993 -4.7177 17 6 3.1666 1.0234 -5.5060 18 6 4.1944 0.9565 -6.4314 19 35 4.3660 -0.4709 -7.6598 20 6 5.0566 1.9739 -6.3880 21 16 4.5724 3.1044 -5.1307 22 1 -0.3633 -1.0273 -0.0260 23 1 -0.3634 0.4912 0.9026 24 1 -0.3633 0.5362 -0.8767 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.5177 0.4032 3.5855 28 1 0.7403 1.8250 -1.5501 29 1 2.7439 0.7134 -2.4299 30 1 3.6180 2.2147 -2.0423 31 1 2.0905 3.4867 -3.5247 32 1 1.2166 1.9853 -3.9124 33 1 2.4024 0.2640 -5.4305 34 1 5.9176 2.0881 -7.0299 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = 7.495817 kcal Electronic energy + Delta-G solvation = -16194.537721 eV Core-core repulsion = 13492.169191 eV Total energy + Delta-G solvation = -2702.368531 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32480 -38.33234 -35.33754 -33.57965 -32.13865 -30.99330 -28.91244 -27.54975 -25.24792 -24.46646 -22.69791 -21.19594 -20.20359 -18.36211 -18.00507 -16.79271 -16.56296 -16.45380 -15.44049 -15.21219 -14.68261 -14.50696 -14.25180 -13.96186 -13.84491 -13.51291 -13.27801 -12.90477 -12.74285 -12.53806 -12.42639 -12.25091 -11.94037 -11.77607 -11.63400 -11.54282 -11.38668 -11.23129 -10.96789 -10.41737 -9.71351 -9.39757 -8.94220 -8.03925 -6.12609 -0.17046 0.14696 0.67879 1.30660 1.41423 1.45779 1.46557 1.53897 2.47179 3.25098 3.49716 3.93822 4.08455 4.18199 4.33055 4.41037 4.54945 4.59994 4.68469 4.74160 4.76283 4.94762 5.08597 5.10115 5.13090 5.27354 5.39379 5.44335 5.70221 5.75897 5.85292 6.32803 6.67695 6.87363 7.00739 7.55318 9.01475 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.002774 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.017282 B =10090.764645 C =10644.284118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.071 3.929 15 C -0.038 4.038 16 C -0.168 4.168 17 C -0.133 4.133 18 C -0.112 4.112 19 Br -0.029 7.029 20 C -0.187 4.187 21 S 0.157 5.843 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.258 0.742 28 H 0.335 0.665 29 H 0.018 0.982 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -0.115 -22.665 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.059 4.059 15 C -0.078 4.078 16 C -0.286 4.286 17 C -0.163 4.163 18 C -0.204 4.204 19 Br 0.054 6.946 20 C -0.325 4.325 21 S 0.420 5.580 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.168 0.832 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.783 1.242 -22.265 22.807 hybrid contribution -0.814 -1.770 0.624 2.046 sum 3.969 -0.529 -21.642 22.009 Atomic orbital electron populations 1.21449 0.95728 0.99355 1.01038 1.21949 0.96676 0.99986 0.99231 1.18930 0.93564 0.89549 0.86714 0.98794 1.21271 1.30415 1.11469 0.90856 0.92689 1.25607 0.95999 0.95899 1.01024 1.70010 1.40200 1.25327 1.20690 0.85712 0.79136 0.78759 0.78618 1.19515 1.21428 1.20099 1.60728 1.05023 1.62905 1.03114 1.21847 0.96213 0.97052 0.90822 1.20079 0.95936 1.02479 0.89269 1.24523 1.01892 0.99303 1.02919 1.20028 1.00421 0.99550 0.96329 1.20754 1.00550 0.97604 1.01512 1.96688 1.97952 1.43326 1.56607 1.25983 1.04726 0.97726 1.04089 1.84473 1.20711 1.23563 1.29243 0.93905 0.93945 0.92940 0.95715 0.92224 0.93251 0.84567 0.96430 0.93155 0.89466 0.88731 0.83182 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.39 71.98 0.68 -4.15 16 2 C -0.14 -6.43 5.50 30.60 0.17 -6.26 16 3 C 0.22 10.91 2.33 44.17 0.10 11.01 16 4 H -0.01 -0.33 7.86 -2.39 -0.02 -0.35 16 5 C -0.50 -27.00 7.35 25.60 0.19 -26.81 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.70 5.22 84.65 0.44 1.14 16 8 N -0.92 -52.68 11.39 21.45 0.24 -52.44 16 9 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.69 -27.61 6.25 -495.45 -3.10 -30.71 16 14 C 0.07 2.40 5.47 86.31 0.47 2.88 16 15 C -0.04 -0.98 5.93 29.85 0.18 -0.80 16 16 C -0.17 -3.97 5.76 24.59 0.14 -3.83 16 17 C -0.13 -3.05 9.91 21.23 0.21 -2.84 16 18 C -0.11 -2.37 6.17 21.24 0.13 -2.24 16 19 Br -0.03 -0.56 33.87 -20.37 -0.69 -1.25 16 20 C -0.19 -3.51 11.05 66.73 0.74 -2.77 16 21 S 0.16 3.22 23.33 -56.49 -1.32 1.91 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.93 7.05 -2.39 -0.02 1.91 16 24 H 0.05 1.87 6.42 -2.39 -0.02 1.86 16 25 H 0.02 1.04 7.24 -2.39 -0.02 1.03 16 26 H 0.06 3.17 6.25 -2.38 -0.01 3.16 16 27 H 0.26 14.22 8.31 -92.72 -0.77 13.45 16 28 H 0.34 12.37 6.56 -89.69 -0.59 11.79 16 29 H 0.02 0.62 7.23 -2.39 -0.02 0.60 16 30 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -58.18 313.16 1.12 -57.06 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.51 Total: 14.60 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.45 Total: -34.67 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.85 Total: -83.14 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.91 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.69 Total: -1.25 kcal Total: -58.18 1.12 -57.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.556 kcal (2) G-P(sol) polarization free energy of solvation -58.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds