Wall clock time and date at job start Tue Mar 31 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3 5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47022 * 89.99986 * 13 11 9 15 15 H 1.48502 * 109.46769 * 209.99494 * 13 11 9 16 16 H 1.48495 * 109.47280 * 329.99669 * 13 11 9 17 17 C 1.50701 * 109.46741 * 119.99414 * 2 1 3 18 18 C 1.35413 * 126.76576 * 264.70559 * 17 2 1 19 19 C 1.41482 * 103.98511 * 179.97438 * 18 17 2 20 20 Br 1.89095 * 126.82121 * 180.08566 * 19 18 17 21 21 N 1.30265 * 106.36614 * 0.33710 * 19 18 17 22 22 O 1.20922 * 111.58367 * 359.78500 * 21 19 18 23 23 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46662 * 300.00373 * 1 2 3 25 25 H 1.08996 * 109.46761 * 60.00207 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 27 27 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 28 28 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 29 29 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 30 30 H 0.96999 * 119.99682 * 180.02562 * 12 11 9 31 31 H 1.07997 * 128.01038 * 0.02562 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9975 1.2515 -2.2507 7 6 2.7183 -0.5776 -3.5494 8 6 2.8637 0.4886 -4.6370 9 6 3.3653 -0.1526 -5.9051 10 1 3.5606 -1.2145 -5.9327 11 6 3.5742 0.6161 -7.0306 12 7 4.0115 0.0564 -8.1374 13 14 3.2358 2.4526 -6.9831 14 1 4.4664 3.1720 -6.5665 15 1 2.8250 2.9153 -8.3330 16 1 2.1473 2.7305 -6.0120 17 6 2.0323 -0.7103 1.2306 18 6 2.3968 -0.1402 2.4035 19 6 2.7833 -1.2359 3.2108 20 35 3.4077 -1.1650 4.9942 21 7 2.6288 -2.3029 2.4797 22 8 2.2128 -2.0306 1.3774 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.6872 -1.0412 -3.3639 27 1 2.0088 -1.3373 -3.8773 28 1 1.8950 0.9526 -4.8227 29 1 3.5734 1.2480 -4.3089 30 1 4.1587 0.5973 -8.9290 31 1 2.3926 0.9082 2.6630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516971608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:09 Heat of formation + Delta-G solvation = -28.853075 kcal Electronic energy + Delta-G solvation = -18029.582122 eV Core-core repulsion = 14747.051420 eV Total energy + Delta-G solvation = -3282.530702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.49437 -40.42951 -36.90696 -34.84433 -33.83286 -33.60287 -31.49436 -31.19737 -30.34983 -26.69891 -24.63421 -23.88872 -22.25422 -20.99482 -19.91233 -18.26513 -18.02770 -17.73553 -16.65826 -16.19028 -16.01602 -14.83969 -14.39311 -14.09645 -13.93597 -13.86795 -13.39866 -12.76558 -12.65092 -12.48562 -12.40196 -12.30285 -11.66446 -11.46659 -11.08826 -11.00385 -10.88045 -10.41857 -10.23956 -10.23423 -10.06610 -9.90404 -9.77158 -9.30567 -8.59481 -6.10635 -4.11006 0.65541 0.85031 1.47893 2.44418 2.56376 2.65008 3.31014 3.38376 3.45936 3.80089 4.34996 4.42377 4.42408 4.54336 4.73956 4.77862 5.01777 5.23839 5.25080 5.42008 5.48964 5.79789 5.91889 5.93905 6.32447 6.60094 7.16793 7.24394 7.58983 7.65625 7.99842 8.42531 8.91747 9.50642 11.01919 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.002435 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.849779 B =11497.181041 C =11588.872322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.164 3.836 3 H 0.121 0.879 4 O -0.351 6.351 5 C 0.462 3.538 6 O -0.506 6.506 7 C -0.095 4.095 8 C -0.002 4.002 9 C -0.529 4.529 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.008 4.008 18 C -0.194 4.194 19 C 0.004 3.996 20 Br 0.051 6.949 21 N -0.328 5.328 22 O 0.140 5.860 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -0.833 27.950 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.108 3.892 3 H 0.139 0.861 4 O -0.269 6.269 5 C 0.306 3.694 6 O -0.393 6.393 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.072 4.072 18 C -0.218 4.218 19 C -0.233 4.233 20 Br 0.132 6.868 21 N -0.026 5.026 22 O 0.065 5.935 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.661 -1.727 28.685 29.113 hybrid contribution -0.257 1.840 -0.228 1.872 sum -4.917 0.113 28.457 28.879 Atomic orbital electron populations 1.22245 0.91749 1.04269 1.04280 1.20953 0.95224 0.95248 0.77801 0.86135 1.86730 1.77516 1.42694 1.19977 1.24899 0.73368 0.86275 0.84851 1.90627 1.48006 1.16881 1.83751 1.21604 1.02722 1.01508 0.87432 1.19495 0.97995 0.93698 0.92736 1.21017 1.44989 0.96915 0.93712 0.90596 1.24962 0.94261 0.98648 0.95231 1.69901 1.45703 1.36242 1.01900 0.86802 0.79579 0.85739 0.77453 1.20167 1.21308 1.18587 1.24262 1.01536 0.83642 0.97742 1.22345 1.05947 1.01410 0.92062 1.25265 1.08653 0.91887 0.97451 1.96815 1.86626 1.98560 1.04767 1.74120 1.13271 1.23033 0.92203 1.84958 1.59380 1.23931 1.25216 0.90661 0.90206 0.89923 0.88077 0.87938 0.95519 0.96020 0.92551 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.53 37.16 0.35 -1.17 16 2 C 0.16 1.82 3.05 -27.88 -0.09 1.74 16 3 H 0.12 1.29 7.16 -51.93 -0.37 0.92 16 4 O -0.35 -4.98 9.86 -41.58 -0.41 -5.39 16 5 C 0.46 7.77 7.93 36.01 0.29 8.05 16 6 O -0.51 -9.56 15.20 -18.75 -0.29 -9.85 16 7 C -0.10 -1.74 5.75 -27.88 -0.16 -1.90 16 8 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 9 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 10 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 13 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 17 C -0.01 -0.08 6.38 -35.32 -0.23 -0.31 16 18 C -0.19 -1.81 11.09 -39.35 -0.44 -2.24 16 19 C 0.00 0.04 7.84 -16.98 -0.13 -0.09 16 20 Br 0.05 0.44 34.13 -68.01 -2.32 -1.88 16 21 N -0.33 -4.18 12.07 31.68 0.38 -3.80 16 22 O 0.14 1.76 11.19 14.99 0.17 1.92 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.64 7.16 -51.93 -0.37 0.26 16 29 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.19 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -31.33 301.59 -6.00 -37.33 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -3.26 Total: -4.45 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.92 Total: -8.96 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 1.16 Total: -30.17 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.53 Total: -13.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -2.32 Total: -1.88 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.33 -6.00 -37.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516971608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.473 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds