Wall clock time and date at job start Tue Mar 31 2020 11:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3 5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47022 * 89.99986 * 13 11 9 15 15 H 1.48502 * 109.46769 * 209.99494 * 13 11 9 16 16 H 1.48495 * 109.47280 * 329.99669 * 13 11 9 17 17 C 1.50701 * 109.46741 * 119.99414 * 2 1 3 18 18 C 1.35413 * 126.76576 * 264.70559 * 17 2 1 19 19 C 1.41482 * 103.98511 * 179.97438 * 18 17 2 20 20 Br 1.89095 * 126.82121 * 180.08566 * 19 18 17 21 21 N 1.30265 * 106.36614 * 0.33710 * 19 18 17 22 22 O 1.20922 * 111.58367 * 359.78500 * 21 19 18 23 23 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46662 * 300.00373 * 1 2 3 25 25 H 1.08996 * 109.46761 * 60.00207 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 27 27 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 28 28 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 29 29 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 30 30 H 0.96999 * 119.99682 * 180.02562 * 12 11 9 31 31 H 1.07997 * 128.01038 * 0.02562 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9975 1.2515 -2.2507 7 6 2.7183 -0.5776 -3.5494 8 6 2.8637 0.4886 -4.6370 9 6 3.3653 -0.1526 -5.9051 10 1 3.5606 -1.2145 -5.9327 11 6 3.5742 0.6161 -7.0306 12 7 4.0115 0.0564 -8.1374 13 14 3.2358 2.4526 -6.9831 14 1 4.4664 3.1720 -6.5665 15 1 2.8250 2.9153 -8.3330 16 1 2.1473 2.7305 -6.0120 17 6 2.0323 -0.7103 1.2306 18 6 2.3968 -0.1402 2.4035 19 6 2.7833 -1.2359 3.2108 20 35 3.4077 -1.1650 4.9942 21 7 2.6288 -2.3029 2.4797 22 8 2.2128 -2.0306 1.3774 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.6872 -1.0412 -3.3639 27 1 2.0088 -1.3373 -3.8773 28 1 1.8950 0.9526 -4.8227 29 1 3.5734 1.2480 -4.3089 30 1 4.1587 0.5973 -8.9290 31 1 2.3926 0.9082 2.6630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516971608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:07 Heat of formation + Delta-G solvation = -47.163588 kcal Electronic energy + Delta-G solvation = -18030.376126 eV Core-core repulsion = 14747.051420 eV Total energy + Delta-G solvation = -3283.324706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.33768 -41.67939 -38.12047 -35.67049 -35.60888 -34.68218 -33.37209 -31.97442 -31.19649 -28.45596 -25.62589 -24.71076 -23.75760 -22.08047 -21.32996 -19.39390 -19.18333 -18.92637 -18.25129 -17.41066 -17.08142 -16.29812 -15.87604 -15.33574 -14.98129 -14.83565 -14.69069 -14.37879 -14.03769 -13.41291 -13.31035 -13.17822 -13.11851 -12.91668 -12.41141 -12.22493 -12.06876 -11.98314 -11.76992 -11.67467 -11.46183 -11.37012 -10.98419 -10.76714 -10.74823 -8.29439 -6.34001 -0.11625 0.00720 0.69530 1.16488 1.37611 1.39648 1.52182 1.53238 1.72284 2.36974 2.97511 3.06291 3.49339 3.64246 3.68673 3.85283 3.98472 4.06397 4.32475 4.41494 4.59988 4.64314 4.70985 4.88978 5.09439 5.23686 5.33736 5.39828 5.60792 6.23399 6.67006 6.75126 6.78767 7.31185 8.86244 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.002435 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.849779 B =11497.181041 C =11588.872322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.162 3.838 3 H 0.129 0.871 4 O -0.351 6.351 5 C 0.476 3.524 6 O -0.528 6.528 7 C -0.094 4.094 8 C 0.002 3.998 9 C -0.532 4.532 10 H 0.049 0.951 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.252 1.252 17 C -0.016 4.016 18 C -0.178 4.178 19 C -0.004 4.004 20 Br 0.069 6.931 21 N -0.353 5.353 22 O 0.121 5.879 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 0.582 29.966 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.106 3.894 3 H 0.147 0.853 4 O -0.269 6.269 5 C 0.321 3.679 6 O -0.416 6.416 7 C -0.131 4.131 8 C -0.035 4.035 9 C -0.570 4.570 10 H 0.067 0.933 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.765 3.235 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.176 1.176 17 C -0.080 4.080 18 C -0.200 4.200 19 C -0.240 4.240 20 Br 0.150 6.850 21 N -0.054 5.054 22 O 0.048 5.952 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.333 -0.330 30.718 31.179 hybrid contribution -0.034 1.306 -0.732 1.497 sum -5.367 0.976 29.986 30.478 Atomic orbital electron populations 1.22267 0.90100 1.04651 1.05200 1.21270 0.96532 0.95266 0.76345 0.85336 1.86667 1.77278 1.42598 1.20344 1.24251 0.72902 0.85644 0.85078 1.90620 1.49101 1.17641 1.84282 1.21369 1.04029 1.00310 0.87408 1.19331 0.97137 0.94649 0.92420 1.21363 1.44122 0.95981 0.95557 0.93313 1.25856 0.94312 1.03496 0.94944 1.70034 1.47523 1.38147 1.02810 0.85784 0.79867 0.80037 0.77784 1.19338 1.20776 1.17574 1.24307 1.02334 0.83274 0.98110 1.22738 1.03965 1.02475 0.90849 1.25666 1.08066 0.91981 0.98295 1.96835 1.86392 1.98496 1.03277 1.74114 1.14485 1.24187 0.92639 1.84923 1.59985 1.24859 1.25402 0.90586 0.87431 0.90805 0.87072 0.86689 0.95960 0.96314 0.92363 0.76485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.53 71.98 0.69 -1.92 16 2 C 0.16 3.23 3.05 29.85 0.09 3.32 16 3 H 0.13 2.42 7.16 -2.39 -0.02 2.40 16 4 O -0.35 -9.40 9.86 -49.08 -0.48 -9.88 16 5 C 0.48 15.26 7.93 71.24 0.56 15.83 16 6 O -0.53 -19.00 15.20 21.96 0.33 -18.66 16 7 C -0.09 -3.34 5.75 29.85 0.17 -3.16 16 8 C 0.00 0.10 3.33 29.85 0.10 0.20 16 9 C -0.53 -29.48 9.66 25.60 0.25 -29.23 16 10 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 11 C 0.01 0.67 5.47 84.66 0.46 1.13 16 12 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 13 Si 0.94 44.25 27.47 68.60 1.88 46.14 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 17 C -0.02 -0.32 6.38 25.03 0.16 -0.16 16 18 C -0.18 -2.82 11.09 22.42 0.25 -2.57 16 19 C 0.00 -0.07 7.84 85.72 0.67 0.60 16 20 Br 0.07 1.07 34.13 -20.37 -0.70 0.37 16 21 N -0.35 -8.64 12.07 -55.00 -0.66 -9.30 16 22 O 0.12 2.91 11.19 73.48 0.82 3.73 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 28 H 0.02 1.03 7.16 -2.39 -0.02 1.02 16 29 H 0.02 0.86 7.53 -2.38 -0.02 0.84 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -67.15 301.59 6.00 -61.15 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.10 Total: 0.11 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.40 Total: -15.96 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -0.36 Total: -67.00 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.67 Total: -24.81 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 35 Polarization: 1.07 SS G_CDS: -0.70 Total: 0.37 kcal Total: -67.15 6.00 -61.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516971608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.990 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds