Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30911 * 123.03373 * 2 1 4 4 C 1.29387 * 117.46958 * 180.02562 * 3 2 1 5 5 C 1.50702 * 124.70886 * 179.97438 * 4 3 2 6 6 O 1.45202 * 109.47101 * 89.99988 * 5 4 3 7 7 C 1.34225 * 116.99876 * 180.02562 * 6 5 4 8 8 O 1.20825 * 120.00403 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00066 * 180.02562 * 7 6 5 10 10 S 1.80994 * 109.47314 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00002 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99959 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99550 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47557 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47188 * 120.00366 * 15 13 11 18 18 H 1.48504 * 109.47047 * 239.99693 * 15 13 11 19 19 S 1.70932 * 110.58651 * 359.74939 * 4 3 2 20 20 C 1.36757 * 123.03583 * 180.02562 * 2 1 3 21 21 C 1.46506 * 126.17599 * 359.97438 * 20 2 1 22 22 O 1.21610 * 120.00251 * 359.72014 * 21 20 2 23 23 O 1.34879 * 119.99741 * 180.02562 * 21 20 2 24 24 H 1.08995 * 109.47069 * 269.99426 * 1 2 3 25 25 H 1.09004 * 109.47127 * 29.99810 * 1 2 3 26 26 H 1.09004 * 109.47009 * 150.00060 * 1 2 3 27 27 H 1.08998 * 109.47275 * 210.00092 * 5 4 3 28 28 H 1.09001 * 109.47080 * 329.99891 * 5 4 3 29 29 H 1.09001 * 109.47085 * 300.00061 * 9 7 6 30 30 H 1.08997 * 109.47148 * 59.99807 * 9 7 6 31 31 H 0.97002 * 120.00408 * 180.02562 * 14 13 11 32 32 H 0.96702 * 116.99860 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9720 -0.0005 5 6 4.4826 2.1219 -0.0012 6 8 4.7961 2.4914 1.3676 7 6 5.6559 3.5071 1.5429 8 8 6.1314 4.0685 0.5844 9 6 6.0293 3.9465 2.9352 10 16 7.1964 5.3266 2.8398 11 6 7.4535 5.6293 4.5565 12 1 6.9436 5.0264 5.2933 13 6 8.3113 6.6425 4.9617 14 7 8.9323 7.3775 4.0636 15 14 8.5832 6.9637 6.7817 16 1 7.7744 6.0075 7.5794 17 1 10.0214 6.7860 7.1062 18 1 8.1706 8.3529 7.1062 19 16 3.9515 -0.6789 0.0059 20 6 2.2526 -1.1465 -0.0005 21 6 1.7326 -2.5162 -0.0006 22 8 0.5322 -2.7109 0.0050 23 8 2.5854 -3.5612 -0.0006 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 5.3963 1.8237 -0.5153 28 1 4.0383 2.9743 -0.5150 29 1 5.1334 4.2650 3.4682 30 1 6.4920 3.1150 3.4668 31 1 9.5320 8.0853 4.3468 32 1 2.1953 -4.4461 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600704365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = -129.975002 kcal Electronic energy + Delta-G solvation = -20205.226827 eV Core-core repulsion = 16577.535412 eV Total energy + Delta-G solvation = -3627.691415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -40.99103 -40.31213 -39.76817 -36.62515 -36.39239 -32.97487 -32.52574 -30.23168 -29.18897 -28.49094 -25.59698 -23.77365 -23.28848 -21.23350 -20.06119 -19.09058 -18.06835 -17.73977 -17.34864 -17.15082 -16.35070 -16.33616 -15.94266 -15.03379 -14.88128 -14.65453 -14.17293 -14.09536 -13.73944 -13.50269 -13.01713 -12.95871 -12.70660 -12.36699 -12.18885 -12.09878 -11.79209 -11.12899 -11.12356 -11.11542 -10.85753 -10.78465 -10.32212 -10.17331 -10.03222 -9.93502 -9.28159 -9.16078 -8.41846 -6.65602 -6.31411 -4.04576 -0.47745 0.63522 1.09626 1.65988 2.30993 2.45652 2.48996 2.64868 3.17517 3.19452 3.26440 3.36814 3.59718 4.10857 4.28974 4.38845 4.77554 4.86642 4.96301 5.04876 5.14742 5.26261 5.31015 5.45120 5.46700 5.69716 5.75485 6.00668 6.00775 6.41388 7.11469 7.32052 7.52172 7.96487 8.26747 9.14462 10.76120 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.002265 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.525077 B =12359.385154 C =12535.639600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.170 3.830 3 N -0.459 5.459 4 C 0.059 3.941 5 C 0.137 3.863 6 O -0.354 6.354 7 C 0.484 3.516 8 O -0.482 6.482 9 C -0.128 4.128 10 S -0.056 6.056 11 C -0.536 4.536 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.279 1.279 19 S 0.255 5.745 20 C -0.311 4.311 21 C 0.570 3.430 22 O -0.499 6.499 23 O -0.511 6.511 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.269 0.731 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 -20.321 -9.135 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.029 3.971 3 N -0.175 5.175 4 C -0.214 4.214 5 C 0.060 3.940 6 O -0.272 6.272 7 C 0.325 3.675 8 O -0.366 6.366 9 C -0.276 4.276 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.095 0.905 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.748 3.252 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.205 1.205 19 S 0.515 5.485 20 C -0.433 4.433 21 C 0.412 3.588 22 O -0.389 6.389 23 O -0.323 6.323 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -11.730 -19.144 -10.390 24.739 hybrid contribution -1.444 -0.926 2.119 2.726 sum -13.174 -20.070 -8.271 25.392 Atomic orbital electron populations 1.20737 0.85464 1.04810 1.04242 1.21068 0.98761 0.84316 0.92989 1.66081 1.04319 1.31061 1.16035 1.27024 0.94076 0.99114 1.01229 1.21247 0.95576 0.93826 0.83378 1.86572 1.60603 1.50878 1.29147 1.23406 0.75068 0.76253 0.92770 1.90693 1.50546 1.52959 1.42431 1.23332 1.06325 1.06120 0.91793 1.85429 1.51975 1.34262 1.11335 1.22875 1.32538 1.21943 0.91055 0.90474 1.25007 0.94645 0.94761 0.99103 1.70009 1.27161 1.19466 1.33539 0.86060 0.78214 0.78345 0.82561 1.19488 1.20489 1.20479 1.84144 1.03029 0.99421 1.61932 1.24724 0.97938 0.95615 1.25043 1.18896 0.83711 0.83795 0.72368 1.90919 1.15886 1.85581 1.46518 1.84596 1.42924 1.18793 1.86012 0.89410 0.89908 0.88367 0.88174 0.87388 0.87655 0.87681 0.92069 0.72038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.71 36.01 0.35 -0.48 16 2 C 0.17 1.86 6.83 -83.52 -0.57 1.29 16 3 N -0.46 -5.64 10.49 -7.47 -0.08 -5.72 16 4 C 0.06 0.67 7.01 -13.31 -0.09 0.57 16 5 C 0.14 1.65 6.04 36.01 0.22 1.87 16 6 O -0.35 -5.31 10.20 -39.25 -0.40 -5.71 16 7 C 0.48 8.71 7.98 36.01 0.29 9.00 16 8 O -0.48 -9.83 15.61 -18.75 -0.29 -10.12 16 9 C -0.13 -2.49 6.27 36.01 0.23 -2.27 16 10 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 11 C -0.54 -14.73 9.50 30.94 0.29 -14.43 16 12 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.33 13.22 55.49 0.73 -24.59 16 15 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 S 0.25 2.34 23.04 -107.50 -2.48 -0.13 16 20 C -0.31 -3.14 6.52 -36.79 -0.24 -3.38 16 21 C 0.57 5.22 8.30 34.06 0.28 5.50 16 22 O -0.50 -5.38 15.12 -19.35 -0.29 -5.67 16 23 O -0.51 -3.20 13.33 -40.98 -0.55 -3.75 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 0.86 6.06 -51.93 -0.31 0.55 16 27 H 0.10 1.01 8.13 -51.93 -0.42 0.58 16 28 H 0.11 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.11 1.92 8.14 -51.91 -0.42 1.50 16 30 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.42 0.59 9.11 45.56 0.42 1.01 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -34.12 326.23 -6.99 -41.11 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -1.98 Total: -2.13 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.66 Total: -0.37 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.66 Total: -30.31 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.53 Total: -25.25 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -4.69 Total: -3.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.12 -6.99 -41.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600704365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.864 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds