Wall clock time and date at job start Tue Mar 31 2020 11:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30911 * 123.03373 * 2 1 4 4 C 1.29387 * 117.46958 * 180.02562 * 3 2 1 5 5 C 1.50702 * 124.70886 * 179.97438 * 4 3 2 6 6 O 1.45202 * 109.47101 * 89.99988 * 5 4 3 7 7 C 1.34225 * 116.99876 * 180.02562 * 6 5 4 8 8 O 1.20825 * 120.00403 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00066 * 180.02562 * 7 6 5 10 10 S 1.80994 * 109.47314 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00002 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99959 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99550 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47557 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47188 * 120.00366 * 15 13 11 18 18 H 1.48504 * 109.47047 * 239.99693 * 15 13 11 19 19 S 1.70932 * 110.58651 * 359.74939 * 4 3 2 20 20 C 1.36757 * 123.03583 * 180.02562 * 2 1 3 21 21 C 1.46506 * 126.17599 * 359.97438 * 20 2 1 22 22 O 1.21610 * 120.00251 * 359.72014 * 21 20 2 23 23 O 1.34879 * 119.99741 * 180.02562 * 21 20 2 24 24 H 1.08995 * 109.47069 * 269.99426 * 1 2 3 25 25 H 1.09004 * 109.47127 * 29.99810 * 1 2 3 26 26 H 1.09004 * 109.47009 * 150.00060 * 1 2 3 27 27 H 1.08998 * 109.47275 * 210.00092 * 5 4 3 28 28 H 1.09001 * 109.47080 * 329.99891 * 5 4 3 29 29 H 1.09001 * 109.47085 * 300.00061 * 9 7 6 30 30 H 1.08997 * 109.47148 * 59.99807 * 9 7 6 31 31 H 0.97002 * 120.00408 * 180.02562 * 14 13 11 32 32 H 0.96702 * 116.99860 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9720 -0.0005 5 6 4.4826 2.1219 -0.0012 6 8 4.7961 2.4914 1.3676 7 6 5.6559 3.5071 1.5429 8 8 6.1314 4.0685 0.5844 9 6 6.0293 3.9465 2.9352 10 16 7.1964 5.3266 2.8398 11 6 7.4535 5.6293 4.5565 12 1 6.9436 5.0264 5.2933 13 6 8.3113 6.6425 4.9617 14 7 8.9323 7.3775 4.0636 15 14 8.5832 6.9637 6.7817 16 1 7.7744 6.0075 7.5794 17 1 10.0214 6.7860 7.1062 18 1 8.1706 8.3529 7.1062 19 16 3.9515 -0.6789 0.0059 20 6 2.2526 -1.1465 -0.0005 21 6 1.7326 -2.5162 -0.0006 22 8 0.5322 -2.7109 0.0050 23 8 2.5854 -3.5612 -0.0006 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 5.3963 1.8237 -0.5153 28 1 4.0383 2.9743 -0.5150 29 1 5.1334 4.2650 3.4682 30 1 6.4920 3.1150 3.4668 31 1 9.5320 8.0853 4.3468 32 1 2.1953 -4.4461 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600704365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:42 Heat of formation + Delta-G solvation = -153.333636 kcal Electronic energy + Delta-G solvation = -20206.239734 eV Core-core repulsion = 16577.535412 eV Total energy + Delta-G solvation = -3628.704321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82233 -41.50707 -40.58385 -37.77661 -37.19806 -34.60438 -33.83355 -31.61665 -29.91100 -29.56635 -27.69002 -24.53134 -24.14914 -22.57919 -20.80399 -19.97920 -19.78654 -18.83118 -18.42985 -18.06835 -17.56234 -17.15259 -17.04728 -16.88581 -16.13044 -15.78078 -15.54941 -15.10475 -14.72603 -14.54849 -14.41683 -13.94491 -13.67467 -13.61598 -13.35922 -13.15477 -12.91658 -12.71488 -12.65203 -12.52488 -12.06849 -11.77998 -11.75314 -11.72817 -11.16869 -11.04152 -10.84486 -10.37349 -10.05927 -8.72322 -8.37101 -6.16154 -1.28677 -0.13926 0.30560 0.75080 1.05700 1.14483 1.42255 1.42786 1.56186 1.64352 1.83626 1.93818 2.23976 2.64789 2.98369 3.27323 3.44525 3.64858 3.77381 3.94575 4.16136 4.18689 4.27522 4.45162 4.49953 4.64800 4.77987 5.07216 5.12231 5.42717 5.45019 6.19197 6.31888 6.57643 6.80334 7.05322 8.72204 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.002265 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.525077 B =12359.385154 C =12535.639600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 N -0.480 5.480 4 C 0.035 3.965 5 C 0.134 3.866 6 O -0.348 6.348 7 C 0.496 3.504 8 O -0.510 6.510 9 C -0.109 4.109 10 S -0.132 6.132 11 C -0.547 4.547 12 H 0.086 0.914 13 C 0.016 3.984 14 N -0.909 5.909 15 Si 0.999 3.001 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.275 1.275 19 S 0.314 5.686 20 C -0.319 4.319 21 C 0.574 3.426 22 O -0.518 6.518 23 O -0.503 6.503 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.272 0.728 32 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 -22.232 -8.155 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.012 3.988 3 N -0.198 5.198 4 C -0.238 4.238 5 C 0.057 3.943 6 O -0.265 6.265 7 C 0.338 3.662 8 O -0.397 6.397 9 C -0.258 4.258 10 S 0.095 5.905 11 C -0.695 4.695 12 H 0.104 0.896 13 C -0.189 4.189 14 N -0.545 5.545 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.200 1.200 19 S 0.574 5.426 20 C -0.441 4.441 21 C 0.417 3.583 22 O -0.410 6.410 23 O -0.319 6.319 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -12.196 -21.104 -9.417 26.131 hybrid contribution -1.372 -0.537 1.718 2.263 sum -13.568 -21.641 -7.699 26.678 Atomic orbital electron populations 1.20746 0.84519 1.05043 1.04564 1.21315 0.99561 0.84339 0.93587 1.66065 1.04947 1.32191 1.16551 1.26891 0.93909 1.00146 1.02811 1.21493 0.96809 0.94404 0.81591 1.86511 1.59286 1.49323 1.31347 1.22943 0.75070 0.76493 0.91693 1.90690 1.51822 1.54140 1.43095 1.23112 1.05159 1.04032 0.93464 1.85510 1.54799 1.38214 1.12021 1.23220 1.32630 1.22205 0.91407 0.89609 1.26089 0.94195 0.94389 1.04212 1.70154 1.28073 1.20258 1.36042 0.84903 0.78354 0.78403 0.76294 1.18106 1.19885 1.20021 1.83890 1.01683 0.96971 1.60066 1.25005 0.98727 0.96209 1.24206 1.18756 0.83522 0.84007 0.71965 1.90916 1.16725 1.85893 1.47441 1.84547 1.42384 1.19665 1.85263 0.89006 0.89365 0.88380 0.86117 0.87596 0.86118 0.85597 0.91849 0.69476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.71 71.24 0.69 -0.83 16 2 C 0.15 3.20 6.83 42.35 0.29 3.49 16 3 N -0.48 -11.40 10.49 -177.55 -1.86 -13.26 16 4 C 0.03 0.74 7.01 88.47 0.62 1.36 16 5 C 0.13 3.06 6.04 71.24 0.43 3.49 16 6 O -0.35 -9.92 10.20 -51.37 -0.52 -10.44 16 7 C 0.50 17.43 7.98 71.24 0.57 18.00 16 8 O -0.51 -20.81 15.61 21.97 0.34 -20.47 16 9 C -0.11 -4.15 6.27 71.24 0.45 -3.71 16 10 S -0.13 -6.94 20.57 -56.49 -1.16 -8.10 16 11 C -0.55 -29.98 9.50 67.95 0.65 -29.33 16 12 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 13 C 0.02 0.90 5.49 84.86 0.47 1.37 16 14 N -0.91 -53.87 13.22 21.65 0.29 -53.58 16 15 Si 1.00 42.34 29.55 68.60 2.03 44.36 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 S 0.31 5.09 23.04 -56.49 -1.30 3.78 16 20 C -0.32 -5.91 6.52 24.08 0.16 -5.75 16 21 C 0.57 9.42 8.30 69.98 0.58 10.00 16 22 O -0.52 -10.41 15.12 19.48 0.29 -10.12 16 23 O -0.50 -4.96 13.33 -57.93 -0.77 -5.73 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.10 1.65 6.06 -2.38 -0.01 1.64 16 27 H 0.12 2.24 8.13 -2.39 -0.02 2.22 16 28 H 0.11 2.47 8.13 -2.39 -0.02 2.45 16 29 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 30 H 0.13 4.27 8.14 -2.40 -0.02 4.25 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.44 0.00 9.11 -74.06 -0.67 -0.68 16 Total: -1.00 -73.57 326.23 2.75 -70.82 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.52 Total: 4.65 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.90 Total: -1.92 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -1.58 Total: -66.84 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.66 Total: -46.76 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.46 Total: -4.32 kcal Total: -73.57 2.75 -70.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600704365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.513 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds