Wall clock time and date at job start Tue Mar 31 2020 11:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48493 * 109.47512 * 270.00061 * 3 2 1 5 5 H 1.48503 * 109.47066 * 30.00311 * 3 2 1 6 6 H 1.48507 * 109.47088 * 149.99772 * 3 2 1 7 7 C 1.38979 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99923 * 199.98268 * 7 2 1 9 9 N 1.36969 * 119.99889 * 19.97517 * 7 2 1 10 10 C 1.46505 * 120.00179 * 8.86991 * 9 7 2 11 11 C 1.50697 * 109.47429 * 269.35059 * 10 9 7 12 12 O 1.20826 * 119.99531 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00097 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99846 * 188.87035 * 9 7 2 15 15 O 1.21655 * 120.00339 * 4.89625 * 14 9 7 16 16 C 1.47180 * 119.99697 * 185.17719 * 14 9 7 17 17 C 1.47075 * 127.20491 * 313.47453 * 16 14 9 18 18 C 1.34132 * 105.97430 * 179.86877 * 17 16 14 19 19 O 1.34280 * 109.18551 * 0.40592 * 18 17 16 20 20 C 1.33701 * 110.91357 * 359.72466 * 19 18 17 21 21 Br 1.89098 * 125.83001 * 179.97438 * 20 19 18 22 22 H 0.97003 * 119.99306 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46910 * 29.34859 * 10 9 7 24 24 H 1.08994 * 109.46989 * 149.34389 * 10 9 7 25 25 H 0.96706 * 116.99893 * 179.97438 * 13 11 10 26 26 H 1.07992 * 127.01587 * 0.02562 * 17 16 14 27 27 H 1.07999 * 125.41262 * 180.09749 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4399 0.7001 7 6 2.0090 -1.2036 -0.0005 8 1 3.0401 -1.2320 0.3191 9 7 1.3858 -2.3539 -0.4063 10 6 0.0575 -2.2898 -1.0209 11 6 -0.9973 -2.4113 0.0484 12 8 -0.6728 -2.5389 1.2053 13 8 -2.2973 -2.3789 -0.2844 14 6 1.9947 -3.5448 -0.2400 15 8 3.0567 -3.6079 0.3499 16 6 1.3777 -4.7681 -0.7776 17 6 -0.0280 -5.1829 -0.6551 18 6 -0.1245 -6.3551 -1.2998 19 8 1.0803 -6.6903 -1.7887 20 6 1.9924 -5.7594 -1.4902 21 35 3.8206 -5.8067 -1.9708 22 1 -0.4849 0.8401 -0.0004 23 1 -0.0578 -1.3374 -1.5384 24 1 -0.0525 -3.1065 -1.7343 25 1 -2.9371 -2.4609 0.4361 26 1 -0.8213 -4.6508 -0.1513 27 1 -1.0268 -6.9393 -1.4045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071394.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:40 Heat of formation + Delta-G solvation = -76.320189 kcal Electronic energy + Delta-G solvation = -19329.235440 eV Core-core repulsion = 15908.813314 eV Total energy + Delta-G solvation = -3420.422125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.28191 -39.45101 -38.04742 -35.30177 -34.55519 -32.84175 -31.81830 -31.50944 -28.57323 -27.78241 -25.31249 -22.56022 -21.39209 -20.96870 -19.08778 -17.46054 -17.20671 -16.86697 -16.23478 -15.82386 -15.56834 -14.84229 -14.52641 -14.27425 -13.88373 -13.43166 -12.70721 -12.63155 -12.34260 -11.80252 -11.72231 -11.57422 -11.04673 -10.98611 -10.48528 -10.44792 -10.39977 -10.28395 -9.70569 -9.46709 -9.10333 -8.73304 -8.35043 -8.06116 -6.55349 -3.94264 1.09359 1.58758 2.36550 3.12619 3.20341 3.26250 3.39625 3.56295 3.71421 3.94933 4.20673 4.61733 4.93576 5.19840 5.23835 5.52607 5.79260 5.91327 5.95938 6.40554 6.44788 6.62858 7.02139 7.42637 7.46306 7.85521 8.27756 8.96710 8.98733 9.20148 9.74058 10.52114 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.006579 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.806940 B = 4255.236017 C = 5583.798595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.294 4.294 8 H 0.114 0.886 9 N -0.415 5.415 10 C 0.140 3.860 11 C 0.494 3.506 12 O -0.507 6.507 13 O -0.533 6.533 14 C 0.511 3.489 15 O -0.558 6.558 16 C -0.139 4.139 17 C -0.193 4.193 18 C -0.021 4.021 19 O -0.168 6.168 20 C 0.005 3.995 21 Br 0.065 6.935 22 H 0.274 0.726 23 H 0.137 0.863 24 H 0.078 0.922 25 H 0.391 0.609 26 H 0.154 0.846 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -9.572 -7.280 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.421 4.421 8 H 0.132 0.868 9 N -0.134 5.134 10 C 0.014 3.986 11 C 0.335 3.665 12 O -0.393 6.393 13 O -0.344 6.344 14 C 0.299 3.701 15 O -0.441 6.441 16 C -0.147 4.147 17 C -0.213 4.213 18 C -0.089 4.089 19 O -0.065 6.065 20 C -0.125 4.125 21 Br 0.149 6.851 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.096 0.904 25 H 0.248 0.752 26 H 0.172 0.828 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.864 -9.696 -7.303 12.170 hybrid contribution -0.991 0.959 0.883 1.637 sum -1.855 -8.738 -6.421 11.001 Atomic orbital electron populations 1.69736 1.06154 1.28167 1.48460 1.25269 0.95457 1.00153 0.96578 0.85744 0.79443 0.80051 0.78476 1.20100 1.20981 1.19180 1.19872 0.97531 0.82732 1.41945 0.86819 1.43327 1.13012 1.05502 1.51527 1.20969 0.80810 1.05114 0.91751 1.23726 0.81519 0.70353 0.90896 1.90634 1.81751 1.45469 1.21466 1.84544 1.18517 1.86706 1.44659 1.16772 0.87054 0.81374 0.84875 1.90675 1.23609 1.85103 1.44701 1.21757 0.93306 0.97979 1.01652 1.23043 0.95843 0.97788 1.04625 1.23935 0.86830 0.98015 1.00144 1.83778 1.16988 1.43076 1.62698 1.23873 0.90097 0.91917 1.06594 1.96828 0.98160 1.98406 1.91748 0.91568 0.84539 0.90403 0.75241 0.82809 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.52 8.82 55.50 0.49 -22.03 15 2 C 0.03 0.70 5.03 -17.46 -0.09 0.61 15 3 Si 0.94 20.19 29.60 -169.99 -5.03 15.16 15 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.29 -8.01 9.45 -14.98 -0.14 -8.15 15 8 H 0.11 3.24 7.30 -52.49 -0.38 2.85 15 9 N -0.42 -10.62 2.11 -117.40 -0.25 -10.87 15 10 C 0.14 3.10 4.81 -5.19 -0.02 3.07 15 11 C 0.49 10.83 3.92 36.00 0.14 10.97 15 12 O -0.51 -13.11 16.93 -18.75 -0.32 -13.42 15 13 O -0.53 -9.29 13.42 -39.25 -0.53 -9.82 15 14 C 0.51 12.92 7.32 -12.63 -0.09 12.83 15 15 O -0.56 -15.62 16.35 5.23 0.09 -15.54 15 16 C -0.14 -2.91 5.18 -103.25 -0.53 -3.45 15 17 C -0.19 -3.33 8.89 -37.45 -0.33 -3.67 15 18 C -0.02 -0.29 12.03 29.29 0.35 0.07 15 19 O -0.17 -2.65 10.53 7.35 0.08 -2.57 15 20 C 0.00 0.09 7.87 30.17 0.24 0.32 15 21 Br 0.06 1.09 33.52 -68.01 -2.28 -1.19 15 22 H 0.27 6.63 8.31 -40.82 -0.34 6.30 15 23 H 0.14 3.12 6.10 -51.93 -0.32 2.81 15 24 H 0.08 1.50 5.85 -51.93 -0.30 1.20 15 25 H 0.39 5.14 9.10 45.56 0.41 5.56 15 26 H 0.15 2.68 5.45 -52.49 -0.29 2.39 15 27 H 0.21 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -33.08 267.27 -4.64 -37.72 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.43 Total: 5.93 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -0.48 Total: 12.61 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.24 Total: -32.89 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.68 Total: -41.36 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 35 Polarization: 1.09 SS G_CDS: -2.28 Total: -1.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.08 -4.64 -37.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071394.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.602 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds