Wall clock time and date at job start Tue Mar 31 2020 11:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48493 * 109.47512 * 270.00061 * 3 2 1 5 5 H 1.48503 * 109.47066 * 30.00311 * 3 2 1 6 6 H 1.48507 * 109.47088 * 149.99772 * 3 2 1 7 7 C 1.38979 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99923 * 199.98268 * 7 2 1 9 9 N 1.36969 * 119.99889 * 19.97517 * 7 2 1 10 10 C 1.46505 * 120.00179 * 8.86991 * 9 7 2 11 11 C 1.50697 * 109.47429 * 269.35059 * 10 9 7 12 12 O 1.20826 * 119.99531 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00097 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99846 * 188.87035 * 9 7 2 15 15 O 1.21655 * 120.00339 * 4.89625 * 14 9 7 16 16 C 1.47180 * 119.99697 * 185.17719 * 14 9 7 17 17 C 1.47075 * 127.20491 * 313.47453 * 16 14 9 18 18 C 1.34132 * 105.97430 * 179.86877 * 17 16 14 19 19 O 1.34280 * 109.18551 * 0.40592 * 18 17 16 20 20 C 1.33701 * 110.91357 * 359.72466 * 19 18 17 21 21 Br 1.89098 * 125.83001 * 179.97438 * 20 19 18 22 22 H 0.97003 * 119.99306 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46910 * 29.34859 * 10 9 7 24 24 H 1.08994 * 109.46989 * 149.34389 * 10 9 7 25 25 H 0.96706 * 116.99893 * 179.97438 * 13 11 10 26 26 H 1.07992 * 127.01587 * 0.02562 * 17 16 14 27 27 H 1.07999 * 125.41262 * 180.09749 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4399 0.7001 7 6 2.0090 -1.2036 -0.0005 8 1 3.0401 -1.2320 0.3191 9 7 1.3858 -2.3539 -0.4063 10 6 0.0575 -2.2898 -1.0209 11 6 -0.9973 -2.4113 0.0484 12 8 -0.6728 -2.5389 1.2053 13 8 -2.2973 -2.3789 -0.2844 14 6 1.9947 -3.5448 -0.2400 15 8 3.0567 -3.6079 0.3499 16 6 1.3777 -4.7681 -0.7776 17 6 -0.0280 -5.1829 -0.6551 18 6 -0.1245 -6.3551 -1.2998 19 8 1.0803 -6.6903 -1.7887 20 6 1.9924 -5.7594 -1.4902 21 35 3.8206 -5.8067 -1.9708 22 1 -0.4849 0.8401 -0.0004 23 1 -0.0578 -1.3374 -1.5384 24 1 -0.0525 -3.1065 -1.7343 25 1 -2.9371 -2.4609 0.4361 26 1 -0.8213 -4.6508 -0.1513 27 1 -1.0268 -6.9393 -1.4045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071394.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:38 Heat of formation + Delta-G solvation = -100.108956 kcal Electronic energy + Delta-G solvation = -19330.266998 eV Core-core repulsion = 15908.813314 eV Total energy + Delta-G solvation = -3421.453684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.61336 -41.20124 -39.86220 -37.06313 -36.38928 -34.40027 -33.44332 -33.04568 -29.94132 -29.59231 -27.18437 -24.20189 -22.92355 -22.48043 -20.58393 -19.17084 -18.93218 -18.57844 -17.80988 -17.36565 -17.19104 -16.55012 -16.20435 -16.01631 -15.36029 -15.22706 -14.41756 -14.04919 -13.82059 -13.59047 -13.42097 -13.38188 -12.66439 -12.45177 -12.38008 -12.18826 -12.14212 -11.64357 -11.55280 -10.97918 -10.92348 -10.60789 -10.00049 -9.70076 -8.49849 -5.97449 -0.26569 0.16606 1.04259 1.41532 1.42725 1.55152 1.68303 1.98945 2.17444 2.33449 2.49471 2.85406 3.13777 3.64926 3.86021 4.19333 4.24237 4.35545 4.70160 4.78560 4.91650 5.15253 5.41302 5.71009 5.91945 5.92880 6.32597 7.01468 7.21821 7.42204 7.82913 8.55906 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.006579 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.806940 B = 4255.236017 C = 5583.798595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.426 5.426 10 C 0.140 3.860 11 C 0.507 3.493 12 O -0.553 6.553 13 O -0.515 6.515 14 C 0.501 3.499 15 O -0.603 6.603 16 C -0.175 4.175 17 C -0.221 4.221 18 C 0.027 3.973 19 O -0.157 6.157 20 C 0.003 3.997 21 Br 0.072 6.928 22 H 0.279 0.721 23 H 0.128 0.872 24 H 0.107 0.893 25 H 0.415 0.585 26 H 0.151 0.849 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 -10.321 -8.549 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.201 4.201 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.103 0.897 9 N -0.144 5.144 10 C 0.014 3.986 11 C 0.350 3.650 12 O -0.442 6.442 13 O -0.327 6.327 14 C 0.291 3.709 15 O -0.490 6.490 16 C -0.183 4.183 17 C -0.241 4.241 18 C -0.040 4.040 19 O -0.053 6.053 20 C -0.127 4.127 21 Br 0.156 6.844 22 H 0.090 0.910 23 H 0.146 0.854 24 H 0.124 0.876 25 H 0.274 0.726 26 H 0.169 0.831 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -2.859 -10.453 -8.608 13.839 hybrid contribution -0.517 1.120 1.260 1.764 sum -3.376 -9.333 -7.348 12.348 Atomic orbital electron populations 1.69800 1.06801 1.29109 1.47454 1.26014 0.96344 1.02408 0.95285 0.84846 0.77704 0.76120 0.79126 1.18332 1.20158 1.20230 1.19776 0.97107 0.84563 1.44840 0.89670 1.43462 1.14230 1.05252 1.51450 1.21018 0.79711 1.05706 0.92124 1.23499 0.82614 0.69103 0.89815 1.90625 1.82742 1.47735 1.23123 1.84459 1.17105 1.85742 1.45387 1.17416 0.86619 0.82597 0.84257 1.90613 1.25535 1.86120 1.46735 1.21528 0.95695 0.97164 1.03898 1.23019 0.94058 0.99842 1.07224 1.25018 0.87104 0.96235 0.95674 1.83845 1.17409 1.41895 1.62187 1.23868 0.90912 0.91707 1.06170 1.96824 0.97694 1.98401 1.91492 0.91049 0.85441 0.87567 0.72587 0.83133 0.70880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.21 8.82 21.67 0.19 -45.02 15 2 C 0.00 0.04 5.03 84.93 0.43 0.46 15 3 Si 1.00 41.62 29.60 68.60 2.03 43.65 15 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 15 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 7 C -0.34 -19.04 9.45 84.07 0.79 -18.25 15 8 H 0.09 5.18 7.30 -2.91 -0.02 5.16 15 9 N -0.43 -22.46 2.11 -643.57 -1.36 -23.81 15 10 C 0.14 6.18 4.81 85.63 0.41 6.59 15 11 C 0.51 21.86 3.92 71.23 0.28 22.14 15 12 O -0.55 -28.75 16.93 21.96 0.37 -28.38 15 13 O -0.51 -16.73 13.42 -51.39 -0.69 -17.42 15 14 C 0.50 26.22 7.32 86.59 0.63 26.85 15 15 O -0.60 -35.57 16.35 -4.21 -0.07 -35.64 15 16 C -0.18 -7.30 5.18 -18.97 -0.10 -7.39 15 17 C -0.22 -7.18 8.89 23.65 0.21 -6.97 15 18 C 0.03 0.62 12.03 66.88 0.80 1.42 15 19 O -0.16 -4.43 10.53 3.40 0.04 -4.39 15 20 C 0.00 0.13 7.87 67.46 0.53 0.66 15 21 Br 0.07 2.41 33.52 -20.37 -0.68 1.72 15 22 H 0.28 13.26 8.31 -92.71 -0.77 12.49 15 23 H 0.13 5.83 6.10 -2.39 -0.01 5.82 15 24 H 0.11 4.00 5.85 -2.39 -0.01 3.99 15 25 H 0.41 9.75 9.10 -74.05 -0.67 9.07 15 26 H 0.15 4.97 5.45 -2.91 -0.02 4.96 15 27 H 0.28 2.51 8.06 -2.91 -0.02 2.48 15 Total: -1.00 -75.21 267.27 4.41 -70.80 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.59 Total: 12.99 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 3.99 Total: 25.50 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -1.17 Total: -68.84 kcal Atomic # 8 Polarization: -85.48 SS G_CDS: -0.35 Total: -85.84 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 35 Polarization: 2.41 SS G_CDS: -0.68 Total: 1.72 kcal Total: -75.21 4.41 -70.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071394.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.307 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds