Wall clock time and date at job start Tue Mar 31 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00298 * 2 1 4 4 H 1.48500 * 109.47049 * 240.00279 * 3 2 1 5 5 H 1.48504 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47210 * 119.99882 * 3 2 1 7 7 C 1.37885 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47661 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00516 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47517 * 180.02562 * 12 11 10 14 14 O 1.33676 * 125.79827 * 270.28301 * 13 12 11 15 15 C 1.34221 * 110.92572 * 180.16559 * 14 13 12 16 16 Br 1.89100 * 125.43955 * 179.85006 * 15 14 13 17 17 C 1.34278 * 109.12265 * 359.58540 * 15 14 13 18 18 C 1.36488 * 125.80106 * 89.99826 * 13 12 11 19 19 C 1.47231 * 127.19244 * 359.97438 * 18 13 12 20 20 O 1.21528 * 120.00211 * 0.02562 * 19 18 13 21 21 O 1.34767 * 119.99719 * 180.02562 * 19 18 13 22 22 H 0.97006 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47605 * 60.00340 * 9 7 2 24 24 H 1.08999 * 109.47434 * 300.00181 * 9 7 2 25 25 H 1.09007 * 109.47167 * 60.00073 * 10 9 7 26 26 H 1.08999 * 109.47065 * 300.00353 * 10 9 7 27 27 H 1.00903 * 110.99628 * 56.04374 * 11 10 9 28 28 H 1.08995 * 109.47317 * 59.99846 * 12 11 10 29 29 H 1.09004 * 109.47306 * 299.99982 * 12 11 10 30 30 H 1.08000 * 127.02819 * 180.27382 * 17 15 14 31 31 H 0.96701 * 117.00144 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5106 -4.9343 0.0001 12 6 2.4349 -6.0759 0.0007 13 6 1.6469 -7.3604 0.0007 14 8 1.2330 -8.0239 1.0849 15 6 0.5593 -9.1325 0.7404 16 35 -0.2026 -10.3722 1.9480 17 6 0.5077 -9.2176 -0.5987 18 6 1.2298 -8.0412 -1.1063 19 6 1.4550 -7.6742 -2.5142 20 8 2.0743 -6.6649 -2.7875 21 8 0.9744 -8.4576 -3.4999 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6044 -0.8905 27 1 0.8739 -4.9845 -0.7811 28 1 3.0629 -6.0346 0.8906 29 1 3.0630 -6.0355 -0.8893 30 1 0.0326 -9.9914 -1.1834 31 1 1.1478 -8.1758 -4.4086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181164.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:12 Heat of formation + Delta-G solvation = -74.190105 kcal Electronic energy + Delta-G solvation = -17985.804455 eV Core-core repulsion = 14701.307792 eV Total energy + Delta-G solvation = -3284.496663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.98409 -40.01997 -36.53449 -35.94117 -33.51180 -33.19905 -32.31987 -30.55621 -28.51420 -25.99329 -24.37526 -23.07498 -22.08875 -20.67018 -19.89031 -18.40032 -17.50028 -16.86531 -16.27177 -16.10810 -15.54441 -15.25502 -14.51832 -14.40140 -13.90914 -13.79406 -13.35049 -13.19174 -12.57301 -12.14419 -11.87279 -11.75746 -11.65600 -11.12292 -10.99873 -10.92393 -10.77960 -10.57658 -10.21888 -10.02790 -9.47546 -9.20015 -8.89705 -8.34836 -7.99508 -5.98865 -4.01703 0.49246 0.85495 1.37654 2.58533 2.80751 3.01978 3.34814 3.38945 3.41372 4.26780 4.46018 4.52920 4.69521 4.84839 5.16777 5.34987 5.37131 5.44753 5.63811 5.77440 6.24426 6.29401 6.34435 6.53009 6.92527 7.28266 7.64821 7.72555 7.74547 7.87994 8.05826 8.42095 9.04913 9.61886 11.12582 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002954 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.881004 B = 9477.439415 C =10541.297944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.681 5.681 12 C 0.116 3.884 13 C 0.142 3.858 14 O -0.144 6.144 15 C -0.035 4.035 16 Br 0.057 6.943 17 C -0.108 4.108 18 C -0.237 4.237 19 C 0.559 3.441 20 O -0.505 6.505 21 O -0.510 6.510 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.024 0.976 27 H 0.342 0.658 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -25.998 -0.653 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.060 4.060 11 N -0.313 5.313 12 C -0.013 4.013 13 C 0.085 3.915 14 O -0.039 6.039 15 C -0.161 4.161 16 Br 0.141 6.859 17 C -0.130 4.130 18 C -0.242 4.242 19 C 0.404 3.596 20 O -0.395 6.395 21 O -0.322 6.322 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.160 0.840 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.191 0.809 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.087 -26.109 1.128 26.133 hybrid contribution 0.858 1.219 -1.842 2.369 sum 0.771 -24.890 -0.713 24.912 Atomic orbital electron populations 1.69965 1.06054 1.26739 1.50449 1.25003 0.94851 0.99238 0.95247 0.86627 0.79542 0.83021 0.78605 1.20262 1.21278 1.20200 1.21113 0.92981 0.90876 1.51162 0.92685 1.19067 0.94001 0.90221 0.97877 1.22229 0.97223 0.87313 0.99256 1.60756 1.19085 1.01330 1.50156 1.20847 0.93059 0.83340 1.04054 1.23254 0.92779 0.93220 0.82234 1.83915 1.55301 1.30038 1.34645 1.23670 1.06500 0.92099 0.93878 1.96878 1.79488 1.48467 1.61067 1.22749 1.00219 0.98543 0.91458 1.20067 1.12490 1.00656 0.90938 1.19450 0.75187 0.80077 0.84930 1.90968 1.38728 1.25624 1.84161 1.84536 1.73960 1.54008 1.19726 0.92911 0.96670 0.95544 0.91867 0.95754 0.83989 0.88580 0.89617 0.80925 0.72525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 10 C 0.07 1.42 5.62 -3.83 -0.02 1.40 16 11 N -0.68 -12.51 6.49 -115.07 -0.75 -13.26 16 12 C 0.12 1.73 5.69 -4.98 -0.03 1.70 16 13 C 0.14 1.97 6.89 -34.94 -0.24 1.73 16 14 O -0.14 -1.97 10.52 7.58 0.08 -1.89 16 15 C -0.04 -0.41 7.76 29.34 0.23 -0.18 16 16 Br 0.06 0.52 34.08 -68.01 -2.32 -1.80 16 17 C -0.11 -1.17 10.99 -37.40 -0.41 -1.58 16 18 C -0.24 -3.05 6.32 -103.30 -0.65 -3.70 16 19 C 0.56 7.09 8.33 34.38 0.29 7.37 16 20 O -0.51 -7.81 15.63 -19.29 -0.30 -8.11 16 21 O -0.51 -4.69 13.34 -40.67 -0.54 -5.23 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.34 6.40 8.72 -39.29 -0.34 6.06 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.28 6.48 -51.93 -0.34 0.95 16 30 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.42 1.98 9.11 45.56 0.42 2.39 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -32.59 304.74 -7.26 -39.85 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -2.34 Total: 1.86 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.40 Total: -6.39 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.01 Total: -39.67 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.76 Total: -15.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: 0.52 SS G_CDS: -2.32 Total: -1.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.59 -7.26 -39.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181164.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.340 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds