Wall clock time and date at job start Tue Mar 31 2020 11:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00298 * 2 1 4 4 H 1.48500 * 109.47049 * 240.00279 * 3 2 1 5 5 H 1.48504 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47210 * 119.99882 * 3 2 1 7 7 C 1.37885 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47661 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00516 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47517 * 180.02562 * 12 11 10 14 14 O 1.33676 * 125.79827 * 270.28301 * 13 12 11 15 15 C 1.34221 * 110.92572 * 180.16559 * 14 13 12 16 16 Br 1.89100 * 125.43955 * 179.85006 * 15 14 13 17 17 C 1.34278 * 109.12265 * 359.58540 * 15 14 13 18 18 C 1.36488 * 125.80106 * 89.99826 * 13 12 11 19 19 C 1.47231 * 127.19244 * 359.97438 * 18 13 12 20 20 O 1.21528 * 120.00211 * 0.02562 * 19 18 13 21 21 O 1.34767 * 119.99719 * 180.02562 * 19 18 13 22 22 H 0.97006 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47605 * 60.00340 * 9 7 2 24 24 H 1.08999 * 109.47434 * 300.00181 * 9 7 2 25 25 H 1.09007 * 109.47167 * 60.00073 * 10 9 7 26 26 H 1.08999 * 109.47065 * 300.00353 * 10 9 7 27 27 H 1.00903 * 110.99628 * 56.04374 * 11 10 9 28 28 H 1.08995 * 109.47317 * 59.99846 * 12 11 10 29 29 H 1.09004 * 109.47306 * 299.99982 * 12 11 10 30 30 H 1.08000 * 127.02819 * 180.27382 * 17 15 14 31 31 H 0.96701 * 117.00144 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5106 -4.9343 0.0001 12 6 2.4349 -6.0759 0.0007 13 6 1.6469 -7.3604 0.0007 14 8 1.2330 -8.0239 1.0849 15 6 0.5593 -9.1325 0.7404 16 35 -0.2026 -10.3722 1.9480 17 6 0.5077 -9.2176 -0.5987 18 6 1.2298 -8.0412 -1.1063 19 6 1.4550 -7.6742 -2.5142 20 8 2.0743 -6.6649 -2.7875 21 8 0.9744 -8.4576 -3.4999 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6044 -0.8905 27 1 0.8739 -4.9845 -0.7811 28 1 3.0629 -6.0346 0.8906 29 1 3.0630 -6.0355 -0.8893 30 1 0.0326 -9.9914 -1.1834 31 1 1.1478 -8.1758 -4.4086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181164.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:12 Heat of formation + Delta-G solvation = -97.715244 kcal Electronic energy + Delta-G solvation = -17986.824582 eV Core-core repulsion = 14701.307792 eV Total energy + Delta-G solvation = -3285.516790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.95516 -40.97790 -37.85808 -37.05255 -35.19331 -34.41852 -33.45875 -32.03311 -29.95008 -27.34675 -25.86300 -24.51159 -23.02262 -22.52833 -20.87427 -19.33432 -18.58786 -18.43181 -17.80851 -17.25935 -16.52291 -16.50061 -16.45909 -15.58177 -15.42577 -14.98128 -14.48768 -14.19451 -14.11938 -14.01121 -13.35481 -12.83124 -12.81704 -12.65029 -12.51008 -12.43544 -12.06726 -11.88182 -11.69159 -11.47622 -11.34916 -11.14709 -10.56000 -9.88861 -9.47618 -8.19953 -6.31737 -0.36343 -0.17990 0.49488 1.41350 1.44979 1.52745 1.63777 1.83340 2.11810 2.41458 3.13626 3.17503 3.49242 3.58029 3.86533 4.06430 4.29661 4.46615 4.53961 4.58116 4.59960 4.89060 5.02928 5.40694 5.49600 5.54096 5.62862 5.72474 5.98794 6.14465 6.31141 6.84718 6.91297 7.37468 8.92232 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002954 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.881004 B = 9477.439415 C =10541.297944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.687 5.687 12 C 0.122 3.878 13 C 0.121 3.879 14 O -0.157 6.157 15 C -0.045 4.045 16 Br 0.081 6.919 17 C -0.098 4.098 18 C -0.239 4.239 19 C 0.564 3.436 20 O -0.539 6.539 21 O -0.497 6.497 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.004 1.004 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.338 0.662 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.202 0.798 31 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -26.962 -0.882 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.318 5.318 12 C -0.007 4.007 13 C 0.065 3.935 14 O -0.053 6.053 15 C -0.171 4.171 16 Br 0.164 6.836 17 C -0.119 4.119 18 C -0.243 4.243 19 C 0.409 3.591 20 O -0.431 6.431 21 O -0.311 6.311 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.155 0.845 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.219 0.781 31 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 0.612 -27.112 0.879 27.133 hybrid contribution 0.556 1.360 -1.786 2.313 sum 1.168 -25.751 -0.908 25.794 Atomic orbital electron populations 1.70110 1.07901 1.27900 1.51315 1.26001 0.95775 1.03469 0.94558 0.85446 0.78205 0.77801 0.79249 1.19147 1.20863 1.18982 1.21574 0.93674 0.92024 1.51102 0.91789 1.18915 0.94323 0.92266 0.95092 1.21835 0.95743 0.86996 0.99659 1.60627 1.19681 1.01443 1.50076 1.20748 0.92638 0.82605 1.04693 1.22978 0.94148 0.93470 0.82893 1.83881 1.55757 1.30827 1.34807 1.24150 1.06138 0.91819 0.94982 1.96903 1.78973 1.47195 1.60486 1.23058 0.99356 0.98218 0.91293 1.20280 1.12004 1.01117 0.90949 1.19451 0.74534 0.79671 0.85421 1.90958 1.40358 1.27119 1.84696 1.84489 1.72980 1.52942 1.20674 0.92731 0.99307 0.98510 0.91033 0.95618 0.84451 0.87318 0.89571 0.78116 0.70147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.09 3.67 5.62 86.30 0.49 4.15 16 11 N -0.69 -25.56 6.49 -517.96 -3.36 -28.92 16 12 C 0.12 3.59 5.69 85.56 0.49 4.08 16 13 C 0.12 3.31 6.89 25.28 0.17 3.48 16 14 O -0.16 -4.19 10.52 4.20 0.04 -4.14 16 15 C -0.05 -0.98 7.76 66.92 0.52 -0.46 16 16 Br 0.08 1.33 34.08 -20.37 -0.69 0.64 16 17 C -0.10 -1.92 10.99 23.68 0.26 -1.66 16 18 C -0.24 -5.87 6.32 -19.01 -0.12 -5.99 16 19 C 0.56 13.64 8.33 70.19 0.58 14.23 16 20 O -0.54 -16.48 15.63 19.75 0.31 -16.17 16 21 O -0.50 -8.03 13.34 -56.78 -0.76 -8.79 16 22 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.34 12.98 8.72 -89.69 -0.78 12.20 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.09 2.57 6.48 -2.38 -0.02 2.55 16 30 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.44 3.16 9.11 -74.06 -0.67 2.49 16 Total: -1.00 -70.36 304.74 0.83 -69.53 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -0.27 Total: 9.75 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.24 Total: -11.11 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -3.08 Total: -86.37 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.40 Total: -29.11 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 35 Polarization: 1.33 SS G_CDS: -0.69 Total: 0.64 kcal Total: -70.36 0.83 -69.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181164.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.180 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds