Wall clock time and date at job start Tue Mar 31 2020 11:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47203 * 240.00325 * 3 2 1 5 5 H 1.48506 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 119.99970 * 3 2 1 7 7 C 1.37884 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53499 * 114.20499 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98500 * 220.14320 * 10 9 7 12 12 S 1.65599 * 136.05959 * 207.07988 * 11 10 9 13 13 O 1.42096 * 106.39961 * 329.47138 * 12 11 10 14 14 O 1.42097 * 106.40204 * 196.54805 * 12 11 10 15 15 C 1.76197 * 107.21424 * 83.00801 * 12 11 10 16 16 C 1.37414 * 123.35518 * 247.42119 * 15 12 11 17 17 C 1.33866 * 115.11081 * 179.72203 * 16 15 12 18 18 S 1.70608 * 110.96142 * 0.24735 * 17 16 15 19 19 C 1.36750 * 123.36027 * 67.60749 * 15 12 11 20 20 C 1.46397 * 125.46272 * 359.97438 * 19 15 12 21 21 O 1.21631 * 119.99581 * 6.84798 * 20 19 15 22 22 O 1.34893 * 120.00392 * 186.84178 * 20 19 15 23 23 C 1.47069 * 87.88120 * 27.34187 * 11 10 9 24 24 H 0.97001 * 119.99951 * 359.97438 * 1 2 3 25 25 H 1.09003 * 113.28404 * 313.05952 * 9 7 2 26 26 H 1.09000 * 113.47043 * 105.36338 * 10 9 7 27 27 H 1.08998 * 113.51820 * 334.92969 * 10 9 7 28 28 H 1.08000 * 122.44834 * 359.97438 * 16 15 12 29 29 H 1.07999 * 124.51936 * 180.28280 * 17 16 15 30 30 H 0.96700 * 117.00253 * 180.02562 * 22 20 19 31 31 H 1.08998 * 113.47265 * 87.43702 * 23 11 10 32 32 H 1.09006 * 113.46325 * 217.87897 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.1488 -3.7442 -0.0016 11 7 1.2079 -4.3590 -0.9502 12 16 0.7470 -5.9003 -1.3428 13 8 1.8788 -6.7283 -1.1135 14 8 0.0885 -5.8145 -2.5990 15 6 -0.4751 -6.3931 -0.1730 16 6 -0.2737 -7.3831 0.7584 17 6 -1.3118 -7.6193 1.5698 18 16 -2.6245 -6.5959 1.1953 19 6 -1.7198 -5.8310 -0.1040 20 6 -2.2171 -4.7596 -0.9688 21 8 -1.5511 -4.3827 -1.9142 22 8 -3.4140 -4.1904 -0.7174 23 6 0.8615 -3.0027 -1.4012 24 1 -0.4850 0.8401 0.0004 25 1 0.4433 -2.5310 0.7295 26 1 2.1871 -4.2517 0.9623 27 1 3.1378 -3.5674 -0.4242 28 1 0.6558 -7.9279 0.8332 29 1 -1.3175 -8.3587 2.3570 30 1 -3.7002 -3.4872 -1.3162 31 1 1.5108 -2.6294 -2.1931 32 1 -0.1971 -2.8785 -1.6297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:23 Heat of formation + Delta-G solvation = -77.125047 kcal Electronic energy + Delta-G solvation = -22877.805724 eV Core-core repulsion = 19252.406055 eV Total energy + Delta-G solvation = -3625.399669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11910 -38.13512 -37.86583 -36.72046 -35.82869 -35.31056 -32.58220 -30.45719 -28.23833 -26.05910 -24.84909 -24.46541 -22.67488 -20.67437 -19.55018 -18.99905 -18.00196 -17.57619 -17.01208 -16.43501 -16.37301 -15.54193 -15.26572 -15.20828 -14.57477 -14.35058 -13.88225 -13.41557 -13.29995 -12.94998 -12.76204 -12.66924 -11.76461 -11.69007 -11.57520 -11.53686 -11.45465 -11.39970 -11.17562 -10.93031 -10.86933 -10.56581 -10.41535 -10.18915 -9.41247 -9.17854 -8.99885 -8.94346 -8.51584 -8.12493 -6.12633 -4.16353 -0.08869 0.70988 1.27931 1.62132 1.89217 2.68187 2.89457 3.28898 3.33771 3.36275 3.55847 4.16208 4.37647 4.50918 4.89544 5.05900 5.19001 5.22421 5.55063 5.74399 5.90257 5.91114 6.27436 6.33287 6.42342 6.49380 6.63811 6.87956 7.07763 7.56692 7.69916 7.85400 7.87410 8.27299 8.86186 9.48719 10.97155 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.005242 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.333238 B = 5340.325695 C = 5943.984770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.124 3.876 11 N -1.039 6.039 12 S 2.721 3.279 13 O -0.970 6.970 14 O -0.932 6.932 15 C -0.611 4.611 16 C -0.077 4.077 17 C -0.253 4.253 18 S 0.292 5.708 19 C -0.142 4.142 20 C 0.526 3.474 21 O -0.440 6.440 22 O -0.511 6.511 23 C 0.136 3.864 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.425 0.575 31 H 0.069 0.931 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -12.224 3.652 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.012 3.988 10 C -0.001 4.001 11 N -0.881 5.881 12 S 2.808 3.192 13 O -0.961 6.961 14 O -0.923 6.923 15 C -0.710 4.710 16 C -0.106 4.106 17 C -0.392 4.392 18 S 0.561 5.439 19 C -0.264 4.264 20 C 0.366 3.634 21 O -0.326 6.326 22 O -0.324 6.324 23 C 0.011 3.989 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.196 0.804 30 H 0.285 0.715 31 H 0.087 0.913 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.279 -12.950 3.560 15.778 hybrid contribution 1.199 0.999 -0.247 1.580 sum -7.080 -11.951 3.313 14.280 Atomic orbital electron populations 1.69942 1.06058 1.27026 1.49372 1.25019 0.94859 0.99288 0.94381 0.86616 0.79594 0.82764 0.78770 1.20070 1.21332 1.20159 1.20954 0.93042 0.89776 1.51624 0.91880 1.20525 0.94517 0.91029 0.92772 1.22853 0.93666 0.93804 0.89766 1.59779 1.54163 1.20200 1.53985 1.01163 0.72979 0.71760 0.73323 1.93523 1.48874 1.67262 1.86393 1.93606 1.75967 1.85604 1.37077 1.31232 1.12844 1.07271 1.19634 1.19605 1.00884 0.96724 0.93340 1.25614 0.99397 1.07418 1.06740 1.83053 1.13455 1.24993 1.22377 1.23378 0.98067 1.01960 1.02944 1.19325 0.80055 0.80995 0.83074 1.91195 1.55865 1.58675 1.26867 1.84463 1.35634 1.53175 1.59164 1.23185 1.00405 0.74517 1.00757 0.92740 0.91843 0.92918 0.90676 0.82112 0.80448 0.71512 0.91295 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 13.26 55.43 0.74 -23.45 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.51 -13.22 8.83 -34.44 -0.30 -13.52 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.77 3.79 -91.13 -0.35 0.43 16 10 C 0.12 2.53 8.29 -8.50 -0.07 2.46 16 11 N -1.04 -21.58 4.10 -125.01 -0.51 -22.09 16 12 S 2.72 53.36 5.58 -107.50 -0.60 52.76 16 13 O -0.97 -19.76 17.41 -57.17 -1.00 -20.75 16 14 O -0.93 -20.51 15.08 -67.04 -1.01 -21.52 16 15 C -0.61 -10.10 5.95 -40.42 -0.24 -10.34 16 16 C -0.08 -1.04 9.69 -41.42 -0.40 -1.44 16 17 C -0.25 -2.68 10.92 29.20 0.32 -2.36 16 18 S 0.29 3.25 22.93 -107.50 -2.47 0.78 16 19 C -0.14 -2.23 6.44 -36.84 -0.24 -2.47 16 20 C 0.53 8.81 8.28 34.01 0.28 9.09 16 21 O -0.44 -8.82 10.53 -27.43 -0.29 -9.11 16 22 O -0.51 -6.58 13.30 -41.02 -0.55 -7.13 16 23 C 0.14 3.10 7.72 -8.37 -0.06 3.04 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.06 1.60 8.11 -51.93 -0.42 1.18 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 28 H 0.16 1.95 7.78 -52.49 -0.41 1.54 16 29 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.42 3.76 9.11 45.56 0.42 4.17 16 31 H 0.07 1.59 8.10 -51.93 -0.42 1.16 16 32 H 0.07 1.69 5.61 -51.93 -0.29 1.39 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -33.06 307.55 -9.17 -42.23 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -1.94 Total: 1.86 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.16 Total: -13.44 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.22 Total: -45.54 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -2.84 Total: -58.50 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 56.60 SS G_CDS: -3.06 Total: 53.54 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.06 -9.17 -42.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds