Wall clock time and date at job start Tue Mar 31 2020 11:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47203 * 240.00325 * 3 2 1 5 5 H 1.48506 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 119.99970 * 3 2 1 7 7 C 1.37884 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53499 * 114.20499 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98500 * 220.14320 * 10 9 7 12 12 S 1.65599 * 136.05959 * 207.07988 * 11 10 9 13 13 O 1.42096 * 106.39961 * 329.47138 * 12 11 10 14 14 O 1.42097 * 106.40204 * 196.54805 * 12 11 10 15 15 C 1.76197 * 107.21424 * 83.00801 * 12 11 10 16 16 C 1.37414 * 123.35518 * 247.42119 * 15 12 11 17 17 C 1.33866 * 115.11081 * 179.72203 * 16 15 12 18 18 S 1.70608 * 110.96142 * 0.24735 * 17 16 15 19 19 C 1.36750 * 123.36027 * 67.60749 * 15 12 11 20 20 C 1.46397 * 125.46272 * 359.97438 * 19 15 12 21 21 O 1.21631 * 119.99581 * 6.84798 * 20 19 15 22 22 O 1.34893 * 120.00392 * 186.84178 * 20 19 15 23 23 C 1.47069 * 87.88120 * 27.34187 * 11 10 9 24 24 H 0.97001 * 119.99951 * 359.97438 * 1 2 3 25 25 H 1.09003 * 113.28404 * 313.05952 * 9 7 2 26 26 H 1.09000 * 113.47043 * 105.36338 * 10 9 7 27 27 H 1.08998 * 113.51820 * 334.92969 * 10 9 7 28 28 H 1.08000 * 122.44834 * 359.97438 * 16 15 12 29 29 H 1.07999 * 124.51936 * 180.28280 * 17 16 15 30 30 H 0.96700 * 117.00253 * 180.02562 * 22 20 19 31 31 H 1.08998 * 113.47265 * 87.43702 * 23 11 10 32 32 H 1.09006 * 113.46325 * 217.87897 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.1488 -3.7442 -0.0016 11 7 1.2079 -4.3590 -0.9502 12 16 0.7470 -5.9003 -1.3428 13 8 1.8788 -6.7283 -1.1135 14 8 0.0885 -5.8145 -2.5990 15 6 -0.4751 -6.3931 -0.1730 16 6 -0.2737 -7.3831 0.7584 17 6 -1.3118 -7.6193 1.5698 18 16 -2.6245 -6.5959 1.1953 19 6 -1.7198 -5.8310 -0.1040 20 6 -2.2171 -4.7596 -0.9688 21 8 -1.5511 -4.3827 -1.9142 22 8 -3.4140 -4.1904 -0.7174 23 6 0.8615 -3.0027 -1.4012 24 1 -0.4850 0.8401 0.0004 25 1 0.4433 -2.5310 0.7295 26 1 2.1871 -4.2517 0.9623 27 1 3.1378 -3.5674 -0.4242 28 1 0.6558 -7.9279 0.8332 29 1 -1.3175 -8.3587 2.3570 30 1 -3.7002 -3.4872 -1.3162 31 1 1.5108 -2.6294 -2.1931 32 1 -0.1971 -2.8785 -1.6297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:21 Heat of formation + Delta-G solvation = -102.207639 kcal Electronic energy + Delta-G solvation = -22878.893387 eV Core-core repulsion = 19252.406055 eV Total energy + Delta-G solvation = -3626.487332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.33207 -39.87080 -38.92510 -38.25042 -37.06642 -36.91002 -34.55429 -31.51244 -30.05785 -27.18509 -26.57536 -26.35968 -23.77599 -22.04576 -21.16872 -20.08885 -19.51122 -18.93604 -18.61528 -18.15131 -17.61212 -16.85528 -16.76557 -16.43505 -16.39633 -15.67883 -15.32281 -14.71069 -14.57876 -14.43616 -14.31144 -13.76503 -13.48138 -13.26950 -13.25269 -13.13232 -13.11142 -12.79474 -12.68151 -12.55222 -12.33745 -12.13180 -12.01645 -11.70128 -10.99216 -10.92163 -10.50580 -10.36658 -9.91339 -9.82252 -8.11422 -6.20907 -1.22372 -0.70064 0.24070 0.66463 0.85772 1.45745 1.50084 1.50891 1.57999 1.80528 2.04742 2.48857 2.69835 3.13238 3.24048 3.78548 4.04309 4.18828 4.19429 4.47369 4.56107 4.64908 4.77213 4.79006 4.87699 4.93319 5.13031 5.16722 5.50299 5.64276 5.87276 5.93256 6.32788 6.75430 6.87205 7.47175 8.98338 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.005242 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.333238 B = 5340.325695 C = 5943.984770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.026 3.974 10 C 0.131 3.869 11 N -1.042 6.042 12 S 2.730 3.270 13 O -0.984 6.984 14 O -0.965 6.965 15 C -0.624 4.624 16 C -0.099 4.099 17 C -0.231 4.231 18 S 0.387 5.613 19 C -0.193 4.193 20 C 0.524 3.476 21 O -0.487 6.487 22 O -0.498 6.498 23 C 0.140 3.860 24 H 0.263 0.737 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.225 0.775 30 H 0.440 0.560 31 H 0.059 0.941 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -13.514 5.864 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.004 3.996 10 C 0.006 3.994 11 N -0.883 5.883 12 S 2.823 3.177 13 O -0.975 6.975 14 O -0.956 6.956 15 C -0.729 4.729 16 C -0.127 4.127 17 C -0.369 4.369 18 S 0.656 5.344 19 C -0.315 4.315 20 C 0.365 3.635 21 O -0.376 6.376 22 O -0.314 6.314 23 C 0.015 3.985 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.189 0.811 29 H 0.242 0.758 30 H 0.303 0.697 31 H 0.077 0.923 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.815 -14.222 5.755 17.694 hybrid contribution 1.187 1.263 -0.802 1.910 sum -7.628 -12.959 4.952 15.832 Atomic orbital electron populations 1.70059 1.07374 1.27648 1.50553 1.25766 0.95599 1.02470 0.94220 0.85638 0.78348 0.78848 0.78948 1.19767 1.21348 1.19295 1.21313 0.93477 0.90830 1.51120 0.91436 1.20399 0.94686 0.91911 0.92555 1.22788 0.93272 0.92348 0.90998 1.59702 1.54596 1.19964 1.54011 1.00425 0.72995 0.70973 0.73340 1.93495 1.50185 1.67026 1.86766 1.93564 1.76454 1.85774 1.39773 1.30648 1.12333 1.09422 1.20523 1.19747 1.02558 0.96707 0.93640 1.26211 0.97926 1.06812 1.05971 1.82762 1.11518 1.22122 1.17967 1.23566 0.99235 1.03145 1.05572 1.19694 0.80276 0.80956 0.82594 1.91167 1.57184 1.60330 1.28963 1.84424 1.34080 1.53492 1.59355 1.22893 0.99435 0.76112 1.00082 0.92835 0.93975 0.90457 0.89983 0.81128 0.75832 0.69742 0.92252 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.04 13.26 21.45 0.28 -50.76 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.53 -27.43 8.83 25.60 0.23 -27.21 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.03 1.24 3.79 -11.12 -0.04 1.20 16 10 C 0.13 5.34 8.29 83.18 0.69 6.03 16 11 N -1.04 -44.35 4.10 -549.43 -2.26 -46.61 16 12 S 2.73 109.28 5.58 -56.49 -0.31 108.97 16 13 O -0.98 -40.24 17.41 -128.00 -2.23 -42.47 16 14 O -0.96 -44.31 15.08 -118.56 -1.79 -46.09 16 15 C -0.62 -20.17 5.95 21.73 0.13 -20.04 16 16 C -0.10 -2.42 9.69 21.08 0.20 -2.22 16 17 C -0.23 -3.80 10.92 66.83 0.73 -3.07 16 18 S 0.39 7.13 22.93 -56.49 -1.30 5.83 16 19 C -0.19 -5.89 6.44 24.05 0.15 -5.73 16 20 C 0.52 17.79 8.28 69.95 0.58 18.37 16 21 O -0.49 -20.49 10.53 27.12 0.29 -20.20 16 22 O -0.50 -12.65 13.30 -58.08 -0.77 -13.42 16 23 C 0.14 6.69 7.72 83.26 0.64 7.33 16 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.04 2.20 8.11 -2.39 -0.02 2.18 16 26 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.08 3.20 8.10 -2.39 -0.02 3.18 16 28 H 0.17 3.72 7.78 -2.91 -0.02 3.69 16 29 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.44 7.82 9.11 -74.06 -0.67 7.15 16 31 H 0.06 2.87 8.10 -2.39 -0.02 2.85 16 32 H 0.06 2.94 5.61 -2.38 -0.01 2.93 16 Total: -1.00 -73.62 307.55 -1.77 -75.39 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.52 Total: 9.55 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.78 Total: -23.85 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -1.97 Total: -97.37 kcal Atomic # 8 Polarization: -117.68 SS G_CDS: -4.50 Total: -122.18 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 116.41 SS G_CDS: -1.61 Total: 114.80 kcal Total: -73.62 -1.77 -75.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.820 kcal (2) G-P(sol) polarization free energy of solvation -73.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds