Wall clock time and date at job start Tue Mar 31 2020 11:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00604 * 2 1 4 4 H 1.48503 * 109.47145 * 275.29608 * 3 2 1 5 5 H 1.48504 * 109.46848 * 35.29273 * 3 2 1 6 6 H 1.48500 * 109.47219 * 155.29609 * 3 2 1 7 7 C 1.38817 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99630 * 340.56246 * 7 2 1 9 9 N 1.36931 * 120.00419 * 160.56080 * 7 2 1 10 10 C 1.46506 * 120.00288 * 142.03455 * 9 7 2 11 11 C 1.53002 * 109.47116 * 270.00273 * 10 9 7 12 12 C 1.50699 * 109.46655 * 179.97438 * 11 10 9 13 13 O 1.20818 * 120.00444 * 359.97438 * 12 11 10 14 14 O 1.34233 * 119.99752 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00100 * 322.03555 * 9 7 2 16 16 C 1.50695 * 109.47710 * 266.29018 * 15 9 7 17 17 C 1.34502 * 125.78429 * 94.91944 * 16 15 9 18 18 C 1.41394 * 106.85065 * 180.02562 * 17 16 15 19 19 C 1.34623 * 106.83604 * 0.02562 * 18 17 16 20 20 Br 1.89088 * 125.79795 * 179.97438 * 19 18 17 21 21 O 1.34303 * 108.39832 * 359.73471 * 19 18 17 22 22 H 0.97000 * 119.99523 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46710 * 30.00145 * 10 9 7 24 24 H 1.08999 * 109.47117 * 149.99942 * 10 9 7 25 25 H 1.08994 * 109.46930 * 299.99631 * 11 10 9 26 26 H 1.08994 * 109.47023 * 60.00082 * 11 10 9 27 27 H 0.96698 * 117.00338 * 179.97438 * 14 12 11 28 28 H 1.09005 * 109.46840 * 26.29317 * 15 9 7 29 29 H 1.09004 * 109.47314 * 146.28415 * 15 9 7 30 30 H 1.08001 * 126.56784 * 359.97438 * 17 16 15 31 31 H 1.08001 * 126.58020 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3860 2.1109 -1.3941 5 1 1.5082 2.6177 0.8089 6 1 3.5993 1.4102 0.5851 7 6 2.0102 -1.2022 -0.0005 8 1 1.5163 -2.1110 0.3103 9 7 3.3210 -1.2360 -0.3952 10 6 4.2718 -2.1105 0.2958 11 6 4.9087 -1.3514 1.4615 12 6 5.8863 -2.2513 2.1726 13 8 6.0558 -3.3837 1.7869 14 8 6.5680 -1.7951 3.2352 15 6 3.7726 -0.3975 -1.5084 16 6 3.7121 -1.1882 -2.7898 17 6 2.6915 -1.1892 -3.6658 18 6 3.0533 -2.0646 -4.7156 19 6 4.2743 -2.5470 -4.4177 20 35 5.2663 -3.7695 -5.4650 21 8 4.6703 -2.0083 -3.2529 22 1 -0.4849 0.8401 0.0004 23 1 3.7483 -2.9878 0.6761 24 1 5.0489 -2.4249 -0.4010 25 1 5.4322 -0.4743 1.0812 26 1 4.1317 -1.0372 2.1583 27 1 7.1834 -2.4091 3.6586 28 1 3.1267 0.4768 -1.5900 29 1 4.7984 -0.0758 -1.3281 30 1 1.7716 -0.6294 -3.5827 31 1 2.4634 -2.3008 -5.5889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186330.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:17 Heat of formation + Delta-G solvation = -46.390234 kcal Electronic energy + Delta-G solvation = -18793.067831 eV Core-core repulsion = 15509.776660 eV Total energy + Delta-G solvation = -3283.291171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.10883 -39.95502 -36.63404 -35.82025 -32.76942 -32.24206 -32.00164 -30.79629 -28.75737 -25.32521 -25.13326 -21.88344 -21.44078 -20.35845 -19.78213 -17.88405 -17.52288 -16.41087 -16.30843 -15.80212 -15.67947 -15.32986 -14.23433 -14.03912 -13.36627 -13.19772 -12.79089 -12.58394 -12.45495 -12.37540 -12.14228 -11.71846 -11.32170 -11.23223 -11.09818 -10.79584 -10.46751 -10.36544 -10.28881 -10.27449 -9.81992 -9.46313 -8.80857 -7.96499 -7.24457 -6.20495 -3.68846 1.15775 1.93000 2.48809 2.97732 3.10705 3.28746 3.29887 3.34823 3.80455 4.27668 4.83712 5.09426 5.30610 5.36048 5.45883 5.55149 5.75935 5.85147 6.00044 6.06541 6.17380 6.26227 6.36668 6.40153 6.62113 6.77299 6.88965 7.46806 7.77094 8.10973 8.18769 8.68290 9.43016 9.78561 10.93696 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005305 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.686238 B = 5276.569947 C = 7127.421078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.042 3.958 3 Si 0.867 3.133 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.279 4.279 8 H 0.086 0.914 9 N -0.585 5.585 10 C 0.161 3.839 11 C -0.136 4.136 12 C 0.481 3.519 13 O -0.521 6.521 14 O -0.524 6.524 15 C 0.201 3.799 16 C 0.022 3.978 17 C -0.207 4.207 18 C -0.148 4.148 19 C -0.055 4.055 20 Br 0.026 6.974 21 O -0.164 6.164 22 H 0.267 0.733 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.401 0.599 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.154 0.846 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 -2.799 -6.422 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.160 4.160 3 Si 0.696 3.304 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.407 4.407 8 H 0.103 0.897 9 N -0.304 5.304 10 C 0.034 3.966 11 C -0.176 4.176 12 C 0.324 3.676 13 O -0.410 6.410 14 O -0.335 6.335 15 C 0.074 3.926 16 C -0.034 4.034 17 C -0.228 4.228 18 C -0.170 4.170 19 C -0.183 4.183 20 Br 0.109 6.891 21 O -0.060 6.060 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.259 0.741 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.172 0.828 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.381 -3.265 -6.917 13.713 hybrid contribution 0.331 0.767 0.383 0.919 sum 11.711 -2.498 -6.535 13.642 Atomic orbital electron populations 1.69828 1.05933 1.27103 1.49833 1.25499 0.95149 0.97743 0.97588 0.87083 0.81031 0.84759 0.77526 1.20827 1.22155 1.18645 1.18858 0.84474 0.94629 1.42735 0.89687 1.44216 1.07307 1.49461 1.29421 1.20814 0.92114 0.92659 0.90964 1.22285 0.96391 0.99024 0.99941 1.24037 0.79068 0.87329 0.77201 1.90687 1.64326 1.20925 1.65051 1.84619 1.54906 1.49621 1.44356 1.20248 0.99702 0.91855 0.80799 1.24615 0.87419 0.94020 0.97299 1.21619 1.01369 1.04749 0.95028 1.21645 0.94393 0.99617 1.01349 1.23565 0.97607 1.05595 0.91558 1.96704 1.74250 1.55431 1.62710 1.84092 1.42326 1.48569 1.31060 0.92246 0.91406 0.92723 0.88602 0.87050 0.74117 0.88901 0.91959 0.82830 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.97 55.49 0.78 -24.20 16 2 C 0.04 1.11 5.33 -17.43 -0.09 1.01 16 3 Si 0.87 19.50 24.85 -169.99 -4.22 15.27 16 4 H -0.28 -6.10 6.70 56.52 0.38 -5.72 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.28 -7.11 9.94 -15.06 -0.15 -7.26 16 8 H 0.09 2.40 8.06 -52.48 -0.42 1.98 16 9 N -0.58 -12.76 2.07 -174.60 -0.36 -13.12 16 10 C 0.16 3.10 4.98 -4.04 -0.02 3.08 16 11 C -0.14 -2.26 6.14 -27.88 -0.17 -2.43 16 12 C 0.48 7.48 8.33 36.01 0.30 7.78 16 13 O -0.52 -9.48 16.74 -18.74 -0.31 -9.80 16 14 O -0.52 -6.50 13.42 -39.27 -0.53 -7.03 16 15 C 0.20 4.05 4.86 -5.20 -0.03 4.02 16 16 C 0.02 0.44 6.90 -35.63 -0.25 0.19 16 17 C -0.21 -3.98 10.81 -39.70 -0.43 -4.40 16 18 C -0.15 -2.51 10.86 -39.66 -0.43 -2.94 16 19 C -0.06 -0.96 7.80 29.45 0.23 -0.73 16 20 Br 0.03 0.35 34.09 -68.01 -2.32 -1.97 16 21 O -0.16 -3.16 10.65 5.56 0.06 -3.10 16 22 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.07 1.38 8.00 -51.92 -0.42 0.97 16 24 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 25 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 26 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 27 H 0.40 3.10 9.10 45.56 0.41 3.52 16 28 H 0.09 1.97 3.28 -51.93 -0.17 1.80 16 29 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -29.55 297.94 -5.74 -35.29 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.28 Total: 5.84 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.04 Total: -1.67 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.41 Total: -37.32 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.78 Total: -19.93 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.22 Total: 15.27 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -2.32 Total: -1.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.55 -5.74 -35.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186330.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds