Wall clock time and date at job start Tue Mar 31 2020 12:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86800 * 120.00273 * 2 1 4 4 H 1.48496 * 109.46907 * 269.99926 * 3 2 1 5 5 H 1.48495 * 109.47027 * 29.99724 * 3 2 1 6 6 H 1.48507 * 109.46977 * 150.00062 * 3 2 1 7 7 C 1.38801 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00318 * 359.97438 * 7 2 1 9 9 O 1.34859 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.34770 * 117.00317 * 179.97438 * 9 7 2 11 11 O 1.21542 * 119.99758 * 0.02562 * 10 9 7 12 12 C 1.47385 * 120.00375 * 179.97438 * 10 9 7 13 13 C 1.39854 * 120.07962 * 180.02562 * 12 10 9 14 14 C 1.37630 * 119.91743 * 180.02562 * 13 12 10 15 15 C 1.39182 * 120.08092 * 0.02562 * 14 13 12 16 16 N 1.39293 * 119.92065 * 179.97438 * 15 14 13 17 17 C 1.34784 * 120.00131 * 215.19791 * 16 15 14 18 18 O 1.21710 * 119.99789 * 355.45006 * 17 16 15 19 19 C 1.46530 * 120.00024 * 175.44573 * 17 16 15 20 20 C 1.36687 * 125.45842 * 179.97438 * 19 17 16 21 21 C 1.37456 * 113.29309 * 180.02562 * 20 19 17 22 22 C 1.33831 * 115.10281 * 0.02562 * 21 20 19 23 23 S 1.70619 * 110.95855 * 359.71857 * 22 21 20 24 24 C 1.39193 * 120.16125 * 0.27093 * 15 14 13 25 25 C 1.37628 * 120.07729 * 359.44962 * 24 15 14 26 26 H 0.97004 * 119.99956 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.04497 * 0.02562 * 13 12 10 28 28 H 1.07994 * 119.95602 * 179.97438 * 14 13 12 29 29 H 0.96993 * 120.00272 * 35.47275 * 16 15 14 30 30 H 1.07999 * 123.35462 * 359.97399 * 20 19 17 31 31 H 1.07994 * 122.45042 * 180.02562 * 21 20 19 32 32 H 1.08003 * 124.52184 * 180.02562 * 22 21 20 33 33 H 1.07998 * 119.96637 * 179.70561 * 24 15 14 34 34 H 1.07999 * 120.03769 * 180.26861 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5459 1.4400 0.7001 7 6 2.0081 -1.2021 -0.0005 8 1 1.4681 -2.1374 -0.0005 9 8 3.3567 -1.2022 0.0000 10 6 3.9685 -2.4030 0.0000 11 8 3.3065 -3.4223 -0.0010 12 6 5.4404 -2.4802 -0.0001 13 6 6.0769 -3.7255 -0.0006 14 6 7.4515 -3.7938 -0.0001 15 6 8.2080 -2.6255 0.0015 16 7 9.5990 -2.6984 0.0026 17 6 10.3215 -1.7818 0.6768 18 8 9.7637 -0.8436 1.2154 19 6 11.7783 -1.9148 0.7613 20 6 12.6166 -1.0538 1.4126 21 6 13.9396 -1.4183 1.3321 22 6 14.1789 -2.5379 0.6391 23 16 12.7274 -3.2107 0.0462 24 6 7.5779 -1.3843 0.0083 25 6 6.2037 -1.3084 0.0020 26 1 -0.4850 0.8401 0.0004 27 1 5.4907 -4.6325 -0.0015 28 1 7.9437 -4.7550 -0.0001 29 1 10.0479 -3.4065 -0.4851 30 1 12.2739 -0.1744 1.9374 31 1 14.7282 -0.8431 1.7943 32 1 15.1596 -2.9619 0.4809 33 1 8.1680 -0.4798 0.0144 34 1 5.7155 -0.3450 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007122037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:05 Heat of formation + Delta-G solvation = -42.038817 kcal Electronic energy + Delta-G solvation = -22111.510803 eV Core-core repulsion = 18488.021731 eV Total energy + Delta-G solvation = -3623.489073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79228 -39.40587 -38.41370 -37.60783 -35.43917 -34.81815 -32.34985 -30.97942 -30.88597 -29.38219 -26.09265 -25.29388 -23.47946 -22.72199 -21.60448 -20.09145 -19.84153 -18.99248 -18.02745 -17.61695 -17.13559 -16.29629 -15.98193 -15.72985 -15.22326 -14.69356 -14.44681 -14.39300 -14.12034 -13.81491 -13.46905 -13.29821 -13.18645 -12.87702 -12.67693 -12.61439 -12.35677 -11.87827 -11.53144 -11.36152 -11.15585 -10.62832 -10.41698 -10.39772 -10.11043 -9.71192 -9.41778 -9.21197 -9.11753 -8.84817 -8.69740 -8.15248 -6.40299 -4.11048 -0.02614 0.93477 1.00579 1.34559 1.55841 1.93370 2.64698 2.76010 3.18370 3.25148 3.36793 3.41304 4.13971 4.20321 4.24769 4.32144 4.49808 4.79369 4.96326 4.98734 5.08164 5.13065 5.42212 5.45734 5.53000 5.58058 5.66360 5.81888 5.87460 6.22682 6.28294 6.34072 6.59895 6.77258 7.02912 7.04344 7.71133 7.72549 8.01699 8.61973 8.97869 9.67430 10.67538 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.002629 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.310603 B =10647.323542 C =11572.028640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.373 4.373 8 H 0.111 0.889 9 O -0.242 6.242 10 C 0.446 3.554 11 O -0.539 6.539 12 C -0.099 4.099 13 C -0.049 4.049 14 C -0.152 4.152 15 C 0.149 3.851 16 N -0.666 5.666 17 C 0.589 3.411 18 O -0.502 6.502 19 C -0.269 4.269 20 C -0.049 4.049 21 C -0.150 4.150 22 C -0.225 4.225 23 S 0.201 5.799 24 C -0.129 4.129 25 C -0.059 4.059 26 H 0.281 0.719 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.407 0.593 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.323 -5.024 -0.492 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.448 4.448 8 H 0.129 0.871 9 O -0.151 6.151 10 C 0.293 3.707 11 O -0.435 6.435 12 C -0.101 4.101 13 C -0.068 4.068 14 C -0.172 4.172 15 C 0.055 3.945 16 N -0.310 5.310 17 C 0.377 3.623 18 O -0.378 6.378 19 C -0.390 4.390 20 C -0.083 4.083 21 C -0.181 4.181 22 C -0.363 4.363 23 S 0.468 5.532 24 C -0.149 4.149 25 C -0.078 4.078 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.243 0.757 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 30.259 -5.759 -0.941 30.816 hybrid contribution 0.971 1.591 0.642 1.971 sum 31.230 -4.168 -0.299 31.508 Atomic orbital electron populations 1.69595 1.05765 1.28590 1.46753 1.24577 0.95040 0.98784 0.95533 0.86235 0.80493 0.81352 0.79068 1.19692 1.20638 1.18127 1.20719 0.76159 0.97064 1.50859 0.87107 1.83544 1.23933 1.31098 1.76491 1.20416 0.87746 0.82686 0.79808 1.90671 1.66506 1.35981 1.50367 1.19433 0.91137 0.94120 1.05364 1.21011 0.93211 0.97423 0.95195 1.20724 0.93596 0.96652 1.06245 1.17788 0.81369 0.94500 1.00836 1.43139 1.05293 1.31212 1.51393 1.17011 0.84816 0.82275 0.78228 1.90881 1.70879 1.30687 1.45353 1.24525 0.96942 1.04216 1.13270 1.20879 0.91680 0.99196 0.96516 1.20094 0.97048 0.98131 1.02837 1.25370 1.03968 1.01659 1.05329 1.83014 0.95818 1.24130 1.50229 1.21201 0.94524 0.97048 1.02139 1.21467 0.92867 0.98844 0.94575 0.90886 0.84146 0.85230 0.75698 0.82575 0.83435 0.81175 0.83997 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.96 55.49 0.77 -25.01 16 2 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 3 Si 0.90 21.58 28.62 -169.99 -4.86 16.72 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.37 -11.22 10.11 30.94 0.31 -10.91 16 8 H 0.11 3.66 7.09 -52.49 -0.37 3.29 16 9 O -0.24 -6.57 7.81 -21.76 -0.17 -6.74 16 10 C 0.45 11.10 7.83 34.45 0.27 11.37 16 11 O -0.54 -14.76 15.58 -19.30 -0.30 -15.06 16 12 C -0.10 -1.93 5.88 -104.96 -0.62 -2.55 16 13 C -0.05 -0.80 9.58 -39.20 -0.38 -1.18 16 14 C -0.15 -1.95 9.94 -39.45 -0.39 -2.34 16 15 C 0.15 2.00 6.30 -83.76 -0.53 1.47 16 16 N -0.67 -7.00 5.30 -11.08 -0.06 -7.06 16 17 C 0.59 6.97 7.62 -12.92 -0.10 6.88 16 18 O -0.50 -7.74 14.23 5.18 0.07 -7.66 16 19 C -0.27 -2.41 6.45 -36.80 -0.24 -2.65 16 20 C -0.05 -0.40 10.01 -40.43 -0.40 -0.80 16 21 C -0.15 -0.89 10.15 -41.41 -0.42 -1.31 16 22 C -0.23 -1.14 10.92 29.19 0.32 -0.82 16 23 S 0.20 1.14 22.16 -107.50 -2.38 -1.25 16 24 C -0.13 -2.02 8.66 -39.45 -0.34 -2.36 16 25 C -0.06 -1.04 9.61 -39.20 -0.38 -1.42 16 26 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.14 2.21 7.64 -52.49 -0.40 1.81 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.41 2.92 7.94 -40.82 -0.32 2.59 16 30 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.17 0.44 8.06 -52.48 -0.42 0.01 16 33 H 0.14 2.20 6.18 -52.49 -0.32 1.88 16 34 H 0.14 2.55 7.60 -52.49 -0.40 2.15 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -35.21 324.54 -7.67 -42.88 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -2.65 Total: 3.15 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.99 Total: -4.85 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.72 Total: -32.07 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.40 Total: -29.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.86 Total: 16.72 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.38 Total: -1.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.21 -7.67 -42.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007122037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds