Wall clock time and date at job start Tue Mar 31 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86800 * 120.00273 * 2 1 4 4 H 1.48496 * 109.46907 * 269.99926 * 3 2 1 5 5 H 1.48495 * 109.47027 * 29.99724 * 3 2 1 6 6 H 1.48507 * 109.46977 * 150.00062 * 3 2 1 7 7 C 1.38801 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00318 * 359.97438 * 7 2 1 9 9 O 1.34859 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.34770 * 117.00317 * 179.97438 * 9 7 2 11 11 O 1.21542 * 119.99758 * 0.02562 * 10 9 7 12 12 C 1.47385 * 120.00375 * 179.97438 * 10 9 7 13 13 C 1.39854 * 120.07962 * 180.02562 * 12 10 9 14 14 C 1.37630 * 119.91743 * 180.02562 * 13 12 10 15 15 C 1.39182 * 120.08092 * 0.02562 * 14 13 12 16 16 N 1.39293 * 119.92065 * 179.97438 * 15 14 13 17 17 C 1.34784 * 120.00131 * 215.19791 * 16 15 14 18 18 O 1.21710 * 119.99789 * 355.45006 * 17 16 15 19 19 C 1.46530 * 120.00024 * 175.44573 * 17 16 15 20 20 C 1.36687 * 125.45842 * 179.97438 * 19 17 16 21 21 C 1.37456 * 113.29309 * 180.02562 * 20 19 17 22 22 C 1.33831 * 115.10281 * 0.02562 * 21 20 19 23 23 S 1.70619 * 110.95855 * 359.71857 * 22 21 20 24 24 C 1.39193 * 120.16125 * 0.27093 * 15 14 13 25 25 C 1.37628 * 120.07729 * 359.44962 * 24 15 14 26 26 H 0.97004 * 119.99956 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.04497 * 0.02562 * 13 12 10 28 28 H 1.07994 * 119.95602 * 179.97438 * 14 13 12 29 29 H 0.96993 * 120.00272 * 35.47275 * 16 15 14 30 30 H 1.07999 * 123.35462 * 359.97399 * 20 19 17 31 31 H 1.07994 * 122.45042 * 180.02562 * 21 20 19 32 32 H 1.08003 * 124.52184 * 180.02562 * 22 21 20 33 33 H 1.07998 * 119.96637 * 179.70561 * 24 15 14 34 34 H 1.07999 * 120.03769 * 180.26861 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5459 1.4400 0.7001 7 6 2.0081 -1.2021 -0.0005 8 1 1.4681 -2.1374 -0.0005 9 8 3.3567 -1.2022 0.0000 10 6 3.9685 -2.4030 0.0000 11 8 3.3065 -3.4223 -0.0010 12 6 5.4404 -2.4802 -0.0001 13 6 6.0769 -3.7255 -0.0006 14 6 7.4515 -3.7938 -0.0001 15 6 8.2080 -2.6255 0.0015 16 7 9.5990 -2.6984 0.0026 17 6 10.3215 -1.7818 0.6768 18 8 9.7637 -0.8436 1.2154 19 6 11.7783 -1.9148 0.7613 20 6 12.6166 -1.0538 1.4126 21 6 13.9396 -1.4183 1.3321 22 6 14.1789 -2.5379 0.6391 23 16 12.7274 -3.2107 0.0462 24 6 7.5779 -1.3843 0.0083 25 6 6.2037 -1.3084 0.0020 26 1 -0.4850 0.8401 0.0004 27 1 5.4907 -4.6325 -0.0015 28 1 7.9437 -4.7550 -0.0001 29 1 10.0479 -3.4065 -0.4851 30 1 12.2739 -0.1744 1.9374 31 1 14.7282 -0.8431 1.7943 32 1 15.1596 -2.9619 0.4809 33 1 8.1680 -0.4798 0.0144 34 1 5.7155 -0.3450 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007122037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:04 Heat of formation + Delta-G solvation = -65.217217 kcal Electronic energy + Delta-G solvation = -22112.515894 eV Core-core repulsion = 18488.021731 eV Total energy + Delta-G solvation = -3624.494163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87538 -41.19259 -39.56382 -38.39235 -37.41501 -36.03693 -34.55273 -32.16351 -31.95655 -30.34199 -27.85608 -26.31987 -24.68739 -23.98247 -22.68882 -21.65976 -20.53073 -20.21360 -19.68774 -19.06962 -18.54935 -17.40630 -16.94545 -16.76796 -16.62622 -16.56714 -16.02321 -15.62576 -15.37024 -14.94213 -14.61853 -14.49800 -14.28990 -14.11026 -13.79514 -13.71787 -13.59162 -13.29575 -13.20194 -12.53428 -12.40249 -12.34130 -11.99553 -11.87997 -11.63350 -11.34161 -11.12870 -10.87352 -10.09754 -9.97412 -9.54220 -9.35950 -8.59573 -6.43613 -0.66568 -0.29809 0.30875 0.45015 0.89053 1.27018 1.30658 1.35879 1.51255 1.63596 1.77073 2.05413 2.23090 2.35492 2.68939 2.95064 3.54611 3.79811 3.88903 4.08230 4.14334 4.21574 4.32191 4.40521 4.41950 4.53713 4.93615 4.99540 5.01968 5.10318 5.21164 5.24283 5.33777 5.36224 5.45687 5.79439 5.85811 6.15302 6.45257 6.76271 6.84099 7.52303 8.53080 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.002629 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.310603 B =10647.323542 C =11572.028640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.406 4.406 8 H 0.061 0.939 9 O -0.250 6.250 10 C 0.450 3.550 11 O -0.572 6.572 12 C -0.136 4.136 13 C -0.043 4.043 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.653 5.653 17 C 0.589 3.411 18 O -0.546 6.546 19 C -0.309 4.309 20 C -0.053 4.053 21 C -0.163 4.163 22 C -0.213 4.213 23 S 0.251 5.749 24 C -0.136 4.136 25 C -0.058 4.058 26 H 0.291 0.709 27 H 0.143 0.857 28 H 0.180 0.820 29 H 0.427 0.573 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.202 0.798 33 H 0.143 0.857 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.427 -5.499 -0.875 36.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.482 4.482 8 H 0.079 0.921 9 O -0.159 6.159 10 C 0.300 3.700 11 O -0.470 6.470 12 C -0.138 4.138 13 C -0.062 4.062 14 C -0.150 4.150 15 C 0.077 3.923 16 N -0.299 5.299 17 C 0.379 3.621 18 O -0.425 6.425 19 C -0.429 4.429 20 C -0.088 4.088 21 C -0.193 4.193 22 C -0.351 4.351 23 S 0.519 5.481 24 C -0.156 4.156 25 C -0.077 4.077 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.198 0.802 29 H 0.267 0.733 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.219 0.781 33 H 0.161 0.839 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 35.393 -6.288 -1.349 35.972 hybrid contribution -0.289 1.517 0.760 1.721 sum 35.104 -4.771 -0.589 35.431 Atomic orbital electron populations 1.69680 1.07453 1.30363 1.47489 1.25545 0.95989 1.02560 0.94089 0.85161 0.79103 0.75976 0.80055 1.18073 1.18591 1.17636 1.20383 0.77535 0.95998 1.54291 0.92141 1.83557 1.22219 1.32151 1.77946 1.21578 0.89974 0.81594 0.76862 1.90633 1.68008 1.36882 1.51456 1.19243 0.87600 0.96460 1.10459 1.21157 0.94773 0.95986 0.94295 1.21072 0.91869 0.98485 1.03622 1.17908 0.82940 0.93892 0.97594 1.43066 1.03909 1.31678 1.51247 1.17446 0.86044 0.81386 0.77190 1.90860 1.72051 1.32413 1.47155 1.24345 0.95597 1.06924 1.16025 1.21049 0.92825 0.98856 0.96047 1.20248 0.96457 0.98975 1.03652 1.25852 1.05201 1.00743 1.03272 1.82805 0.94900 1.21764 1.48658 1.21216 0.93415 0.98375 1.02563 1.21347 0.93760 0.97826 0.94809 0.89877 0.83902 0.80230 0.73330 0.83597 0.81497 0.78139 0.83901 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.96 21.63 0.30 -55.90 16 2 C 0.02 1.13 5.49 84.89 0.47 1.59 16 3 Si 0.98 45.26 28.62 68.60 1.96 47.22 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.41 -26.07 10.11 67.95 0.69 -25.38 16 8 H 0.06 4.37 7.09 -2.91 -0.02 4.35 16 9 O -0.25 -14.26 7.81 10.91 0.09 -14.17 16 10 C 0.45 23.59 7.83 70.23 0.55 24.14 16 11 O -0.57 -33.25 15.58 19.70 0.31 -32.94 16 12 C -0.14 -5.40 5.88 -20.09 -0.12 -5.52 16 13 C -0.04 -1.34 9.58 22.52 0.22 -1.12 16 14 C -0.13 -2.88 9.94 22.35 0.22 -2.65 16 15 C 0.17 4.14 6.30 38.41 0.24 4.38 16 16 N -0.65 -11.58 5.30 -307.16 -1.63 -13.21 16 17 C 0.59 12.80 7.62 86.40 0.66 13.46 16 18 O -0.55 -16.47 14.23 -4.38 -0.06 -16.53 16 19 C -0.31 -4.80 6.45 24.07 0.16 -4.65 16 20 C -0.05 -0.77 10.01 21.72 0.22 -0.55 16 21 C -0.16 -1.42 10.15 21.08 0.21 -1.20 16 22 C -0.21 -1.21 10.92 66.82 0.73 -0.48 16 23 S 0.25 1.81 22.16 -56.49 -1.25 0.56 16 24 C -0.14 -4.09 8.66 22.36 0.19 -3.90 16 25 C -0.06 -2.10 9.61 22.52 0.22 -1.88 16 26 H 0.29 16.13 8.31 -92.71 -0.77 15.36 16 27 H 0.14 4.36 7.64 -2.91 -0.02 4.34 16 28 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.43 4.22 7.94 -92.71 -0.74 3.49 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.20 -0.09 8.06 -2.91 -0.02 -0.12 16 33 H 0.14 4.36 6.18 -2.91 -0.02 4.34 16 34 H 0.13 4.84 7.60 -2.91 -0.02 4.82 16 Total: -1.00 -83.46 324.54 4.80 -78.66 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.44 Total: 10.08 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.65 Total: -3.76 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.33 Total: -69.11 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: 0.33 Total: -63.65 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.96 Total: 47.22 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.25 Total: 0.56 kcal Total: -83.46 4.80 -78.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007122037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.446 kcal (2) G-P(sol) polarization free energy of solvation -83.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds