Wall clock time and date at job start Tue Mar 31 2020 12:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47032 * 269.99952 * 3 2 1 5 5 H 1.48502 * 109.46860 * 29.99685 * 3 2 1 6 6 H 1.48502 * 109.47077 * 149.99790 * 3 2 1 7 7 C 1.38800 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99865 * 0.02562 * 7 2 1 9 9 O 1.34856 * 119.99700 * 180.02562 * 7 2 1 10 10 C 1.34788 * 117.00006 * 180.02562 * 9 7 2 11 11 O 1.21551 * 119.99645 * 359.97438 * 10 9 7 12 12 C 1.47307 * 120.00223 * 179.97438 * 10 9 7 13 13 C 1.39783 * 120.21019 * 4.89626 * 12 10 9 14 14 C 1.37757 * 119.91606 * 180.02562 * 13 12 10 15 15 C 1.38603 * 120.34541 * 359.75335 * 14 13 12 16 16 C 1.38013 * 120.42277 * 0.50441 * 15 14 13 17 17 C 1.38854 * 120.08028 * 359.49063 * 16 15 14 18 18 N 1.39168 * 120.17766 * 180.22918 * 17 16 15 19 19 C 1.34777 * 119.99818 * 324.64746 * 18 17 16 20 20 O 1.21637 * 120.00379 * 4.45988 * 19 18 17 21 21 C 1.47156 * 119.99906 * 184.46581 * 19 18 17 22 22 C 1.44435 * 123.46207 * 179.97438 * 21 19 18 23 23 C 1.32767 * 113.08146 * 180.02562 * 22 21 19 24 24 S 1.75504 * 110.58315 * 359.97438 * 23 22 21 25 25 C 1.36042 * 123.46243 * 359.70322 * 21 19 18 26 26 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.04383 * 0.02562 * 13 12 10 28 28 H 1.08000 * 119.83128 * 179.97438 * 14 13 12 29 29 H 1.08000 * 119.78486 * 180.25509 * 15 14 13 30 30 H 1.08007 * 119.95997 * 179.76872 * 16 15 14 31 31 H 0.97003 * 120.00613 * 144.63734 * 18 17 16 32 32 H 1.07999 * 123.46144 * 359.97438 * 22 21 19 33 33 H 1.08001 * 124.70963 * 180.02562 * 23 22 21 34 34 H 1.07991 * 124.59301 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5458 1.4402 0.7001 7 6 2.0082 -1.2020 0.0005 8 1 1.4682 -2.1373 0.0005 9 8 3.3568 -1.2020 0.0011 10 6 3.9687 -2.4029 0.0010 11 8 3.3067 -3.4223 0.0010 12 6 5.4398 -2.4800 0.0010 13 6 6.2052 -1.3148 0.1041 14 6 7.5805 -1.3939 0.1030 15 6 8.2110 -2.6243 0.0051 16 6 7.4693 -3.7831 -0.1027 17 6 6.0820 -3.7240 -0.1031 18 7 5.3320 -4.8917 -0.2069 19 6 5.7735 -5.9104 -0.9710 20 8 6.8645 -5.8422 -1.5045 21 6 4.9356 -7.1053 -1.1598 22 6 5.3338 -8.2385 -1.9619 23 6 4.4208 -9.2021 -1.9910 24 16 3.0231 -8.7570 -1.0275 25 6 3.7086 -7.2583 -0.5926 26 1 -0.4850 0.8400 -0.0004 27 1 5.7189 -0.3538 0.1846 28 1 8.1705 -0.4928 0.1823 29 1 9.2898 -2.6761 0.0093 30 1 7.9685 -4.7376 -0.1822 31 1 4.4916 -4.9725 0.2707 32 1 6.2769 -8.2959 -2.4850 33 1 4.5244 -10.1312 -2.5318 34 1 3.2326 -6.5283 0.0451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012716641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:57 Heat of formation + Delta-G solvation = -43.062627 kcal Electronic energy + Delta-G solvation = -23105.992410 eV Core-core repulsion = 19482.458942 eV Total energy + Delta-G solvation = -3623.533468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70817 -39.31937 -38.16928 -36.78621 -35.66213 -34.42786 -32.47851 -31.05856 -30.59944 -28.92031 -25.94722 -25.13341 -23.40084 -22.92480 -21.03064 -20.39738 -19.11519 -18.29914 -18.12055 -17.31229 -17.05656 -16.80192 -15.67162 -15.25825 -14.97906 -14.74012 -14.50320 -14.29482 -13.94740 -13.58425 -13.31129 -13.09406 -12.89985 -12.57288 -12.55301 -12.45201 -12.29454 -11.76412 -11.43385 -11.39203 -11.16645 -10.63856 -10.49992 -10.27839 -9.87054 -9.79356 -9.27424 -9.18278 -8.83219 -8.73531 -8.60371 -7.98118 -6.51746 -4.23251 0.62467 1.06782 1.41240 1.50224 1.79769 1.97338 3.09025 3.16066 3.16895 3.26666 3.29650 3.44562 3.98718 4.13960 4.16747 4.67163 4.89881 5.01418 5.09362 5.13771 5.15830 5.29428 5.36275 5.60916 5.64444 5.68755 5.95202 5.99992 6.11947 6.18690 6.42434 6.52849 6.63003 6.66832 7.11871 7.45942 7.69295 7.89372 8.18922 8.46964 8.85615 9.51936 10.55647 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004319 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.602452 B = 6481.627301 C = 8516.494831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.375 4.375 8 H 0.112 0.888 9 O -0.236 6.236 10 C 0.451 3.549 11 O -0.549 6.549 12 C -0.123 4.123 13 C -0.059 4.059 14 C -0.148 4.148 15 C -0.086 4.086 16 C -0.134 4.134 17 C 0.196 3.804 18 N -0.651 5.651 19 C 0.579 3.421 20 O -0.528 6.528 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.243 4.243 24 S 0.191 5.809 25 C -0.196 4.196 26 H 0.282 0.718 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.425 0.575 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 -12.316 -0.132 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.451 4.451 8 H 0.130 0.870 9 O -0.143 6.143 10 C 0.301 3.699 11 O -0.448 6.448 12 C -0.127 4.127 13 C -0.078 4.078 14 C -0.166 4.166 15 C -0.105 4.105 16 C -0.155 4.155 17 C 0.100 3.900 18 N -0.301 5.301 19 C 0.367 3.633 20 O -0.406 6.406 21 C -0.178 4.178 22 C -0.111 4.111 23 C -0.378 4.378 24 S 0.457 5.543 25 C -0.335 4.335 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.270 0.730 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.526 -13.153 -0.184 16.847 hybrid contribution 0.958 1.602 -0.162 1.873 sum 11.483 -11.551 -0.345 16.291 Atomic orbital electron populations 1.69585 1.05785 1.28768 1.46135 1.24583 0.95044 0.98857 0.95328 0.86228 0.80403 0.81299 0.79168 1.19621 1.20539 1.18175 1.20713 0.75998 0.97123 1.51221 0.87015 1.83547 1.24054 1.30751 1.75941 1.20279 0.87324 0.82694 0.79622 1.90435 1.66476 1.35762 1.52092 1.19194 0.91136 0.92740 1.09583 1.21364 0.93630 0.97775 0.95006 1.21070 0.94282 0.97924 1.03347 1.21156 0.99839 0.91995 0.97496 1.21184 0.91459 1.00160 1.02658 1.17596 0.90750 0.84458 0.97235 1.43622 1.26147 1.12962 1.47338 1.17710 0.85574 0.82127 0.77906 1.90746 1.20942 1.80398 1.48561 1.20165 0.95721 0.97010 1.04907 1.21090 1.00625 0.90957 0.98430 1.25506 0.98641 1.04929 1.08735 1.83084 1.18888 1.09071 1.43295 1.25924 0.99052 1.03649 1.04857 0.90750 0.84332 0.85549 0.85569 0.83907 0.73033 0.82860 0.81320 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.96 55.49 0.77 -23.95 16 2 C 0.07 1.86 5.50 -17.52 -0.10 1.76 16 3 Si 0.90 20.67 28.62 -169.99 -4.86 15.80 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.38 -10.76 10.11 30.94 0.31 -10.45 16 8 H 0.11 3.49 7.09 -52.49 -0.37 3.12 16 9 O -0.24 -6.08 7.83 -21.80 -0.17 -6.25 16 10 C 0.45 10.64 7.82 34.42 0.27 10.91 16 11 O -0.55 -13.47 13.15 -19.31 -0.25 -13.72 16 12 C -0.12 -2.39 5.89 -104.82 -0.62 -3.01 16 13 C -0.06 -0.99 9.61 -39.18 -0.38 -1.36 16 14 C -0.15 -2.00 10.02 -39.62 -0.40 -2.40 16 15 C -0.09 -1.14 10.03 -39.53 -0.40 -1.53 16 16 C -0.13 -2.10 8.67 -39.44 -0.34 -2.45 16 17 C 0.20 3.53 6.30 -83.49 -0.53 3.01 16 18 N -0.65 -11.38 4.64 -10.72 -0.05 -11.43 16 19 C 0.58 9.73 7.63 -12.64 -0.10 9.63 16 20 O -0.53 -9.64 14.24 5.24 0.07 -9.57 16 21 C -0.16 -2.28 5.98 -104.63 -0.63 -2.91 16 22 C -0.08 -0.98 10.10 -39.02 -0.39 -1.38 16 23 C -0.24 -2.35 11.12 28.86 0.32 -2.03 16 24 S 0.19 1.90 23.02 -107.50 -2.47 -0.57 16 25 C -0.20 -2.52 10.38 29.94 0.31 -2.21 16 26 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.14 2.31 7.62 -52.48 -0.40 1.91 16 28 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 2.20 6.24 -52.48 -0.33 1.88 16 31 H 0.42 7.43 4.84 -40.82 -0.20 7.23 16 32 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.18 2.28 7.02 -52.49 -0.37 1.92 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.92 319.28 -7.30 -39.22 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.49 Total: 10.07 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.65 Total: -4.42 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.72 Total: -35.38 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.35 Total: -29.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.86 Total: 15.80 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.47 Total: -0.57 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.92 -7.30 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012716641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.839 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds