Wall clock time and date at job start Tue Mar 31 2020 12:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47032 * 269.99952 * 3 2 1 5 5 H 1.48502 * 109.46860 * 29.99685 * 3 2 1 6 6 H 1.48502 * 109.47077 * 149.99790 * 3 2 1 7 7 C 1.38800 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99865 * 0.02562 * 7 2 1 9 9 O 1.34856 * 119.99700 * 180.02562 * 7 2 1 10 10 C 1.34788 * 117.00006 * 180.02562 * 9 7 2 11 11 O 1.21551 * 119.99645 * 359.97438 * 10 9 7 12 12 C 1.47307 * 120.00223 * 179.97438 * 10 9 7 13 13 C 1.39783 * 120.21019 * 4.89626 * 12 10 9 14 14 C 1.37757 * 119.91606 * 180.02562 * 13 12 10 15 15 C 1.38603 * 120.34541 * 359.75335 * 14 13 12 16 16 C 1.38013 * 120.42277 * 0.50441 * 15 14 13 17 17 C 1.38854 * 120.08028 * 359.49063 * 16 15 14 18 18 N 1.39168 * 120.17766 * 180.22918 * 17 16 15 19 19 C 1.34777 * 119.99818 * 324.64746 * 18 17 16 20 20 O 1.21637 * 120.00379 * 4.45988 * 19 18 17 21 21 C 1.47156 * 119.99906 * 184.46581 * 19 18 17 22 22 C 1.44435 * 123.46207 * 179.97438 * 21 19 18 23 23 C 1.32767 * 113.08146 * 180.02562 * 22 21 19 24 24 S 1.75504 * 110.58315 * 359.97438 * 23 22 21 25 25 C 1.36042 * 123.46243 * 359.70322 * 21 19 18 26 26 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.04383 * 0.02562 * 13 12 10 28 28 H 1.08000 * 119.83128 * 179.97438 * 14 13 12 29 29 H 1.08000 * 119.78486 * 180.25509 * 15 14 13 30 30 H 1.08007 * 119.95997 * 179.76872 * 16 15 14 31 31 H 0.97003 * 120.00613 * 144.63734 * 18 17 16 32 32 H 1.07999 * 123.46144 * 359.97438 * 22 21 19 33 33 H 1.08001 * 124.70963 * 180.02562 * 23 22 21 34 34 H 1.07991 * 124.59301 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5458 1.4402 0.7001 7 6 2.0082 -1.2020 0.0005 8 1 1.4682 -2.1373 0.0005 9 8 3.3568 -1.2020 0.0011 10 6 3.9687 -2.4029 0.0010 11 8 3.3067 -3.4223 0.0010 12 6 5.4398 -2.4800 0.0010 13 6 6.2052 -1.3148 0.1041 14 6 7.5805 -1.3939 0.1030 15 6 8.2110 -2.6243 0.0051 16 6 7.4693 -3.7831 -0.1027 17 6 6.0820 -3.7240 -0.1031 18 7 5.3320 -4.8917 -0.2069 19 6 5.7735 -5.9104 -0.9710 20 8 6.8645 -5.8422 -1.5045 21 6 4.9356 -7.1053 -1.1598 22 6 5.3338 -8.2385 -1.9619 23 6 4.4208 -9.2021 -1.9910 24 16 3.0231 -8.7570 -1.0275 25 6 3.7086 -7.2583 -0.5926 26 1 -0.4850 0.8400 -0.0004 27 1 5.7189 -0.3538 0.1846 28 1 8.1705 -0.4928 0.1823 29 1 9.2898 -2.6761 0.0093 30 1 7.9685 -4.7376 -0.1822 31 1 4.4916 -4.9725 0.2707 32 1 6.2769 -8.2959 -2.4850 33 1 4.5244 -10.1312 -2.5318 34 1 3.2326 -6.5283 0.0451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012716641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:57 Heat of formation + Delta-G solvation = -62.508260 kcal Electronic energy + Delta-G solvation = -23106.835636 eV Core-core repulsion = 19482.458942 eV Total energy + Delta-G solvation = -3624.376694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10709 -41.01007 -39.52809 -37.83437 -37.52719 -35.83543 -34.56357 -32.43655 -31.67659 -30.05764 -27.88827 -26.29155 -24.90601 -24.11381 -22.28912 -21.93370 -20.29440 -20.17863 -19.38566 -18.96999 -18.26070 -17.96818 -17.32936 -16.89969 -16.47452 -16.18318 -15.95568 -15.75720 -15.17586 -15.05795 -14.52098 -14.39060 -14.15482 -14.10359 -13.93361 -13.72756 -13.47129 -13.25308 -13.06008 -12.62990 -12.46801 -12.32721 -12.09325 -11.88612 -11.61710 -11.21952 -10.93760 -10.88272 -10.10120 -10.06441 -9.54040 -9.23836 -8.59974 -6.44365 -0.48488 -0.22094 0.28895 0.52929 0.90263 0.94786 1.31815 1.33742 1.51546 1.67800 1.91811 2.16752 2.21450 2.29272 2.74280 2.94451 3.67049 3.78444 3.79271 4.04552 4.11093 4.22750 4.35087 4.37757 4.39690 4.50885 4.77361 4.92017 5.04679 5.15577 5.21375 5.27173 5.35970 5.43437 5.44562 5.81645 5.90848 6.23555 6.42921 6.74762 6.88764 7.47734 8.52070 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.004319 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.602452 B = 6481.627301 C = 8516.494831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.245 1.245 7 C -0.406 4.406 8 H 0.063 0.937 9 O -0.243 6.243 10 C 0.454 3.546 11 O -0.568 6.568 12 C -0.159 4.159 13 C -0.061 4.061 14 C -0.132 4.132 15 C -0.059 4.059 16 C -0.142 4.142 17 C 0.182 3.818 18 N -0.659 5.659 19 C 0.575 3.425 20 O -0.548 6.548 21 C -0.184 4.184 22 C -0.103 4.103 23 C -0.225 4.225 24 S 0.248 5.752 25 C -0.219 4.219 26 H 0.291 0.709 27 H 0.139 0.861 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.145 0.855 31 H 0.421 0.579 32 H 0.159 0.841 33 H 0.207 0.793 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.716 -12.048 -0.451 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.168 1.168 7 C -0.481 4.481 8 H 0.081 0.919 9 O -0.152 6.152 10 C 0.304 3.696 11 O -0.466 6.466 12 C -0.163 4.163 13 C -0.080 4.080 14 C -0.150 4.150 15 C -0.077 4.077 16 C -0.162 4.162 17 C 0.085 3.915 18 N -0.307 5.307 19 C 0.364 3.636 20 O -0.428 6.428 21 C -0.203 4.203 22 C -0.131 4.131 23 C -0.360 4.360 24 S 0.514 5.486 25 C -0.358 4.358 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.189 0.811 29 H 0.191 0.809 30 H 0.162 0.838 31 H 0.264 0.736 32 H 0.176 0.824 33 H 0.223 0.777 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 13.641 -12.924 -0.500 18.798 hybrid contribution 0.093 1.259 -0.057 1.263 sum 13.734 -11.665 -0.557 18.028 Atomic orbital electron populations 1.69676 1.07534 1.30389 1.47299 1.25547 0.95957 1.02649 0.94013 0.85167 0.79432 0.75878 0.79891 1.18565 1.18812 1.16780 1.20376 0.77355 0.96070 1.54312 0.91888 1.83548 1.22300 1.31630 1.77679 1.21328 0.89299 0.81901 0.77041 1.90422 1.67694 1.36351 1.52132 1.19092 0.88381 0.94771 1.14069 1.21538 0.95212 0.96583 0.94630 1.21515 0.92812 0.99814 1.00902 1.21717 1.01966 0.90628 0.93426 1.21367 0.90301 1.01563 1.03017 1.17932 0.91943 0.84056 0.97525 1.43725 1.26055 1.13378 1.47570 1.18143 0.85683 0.82542 0.77206 1.90700 1.21766 1.80975 1.49335 1.20233 0.96144 0.97119 1.06797 1.21145 1.01761 0.90921 0.99257 1.25954 0.97396 1.05335 1.07296 1.82896 1.17885 1.06094 1.41726 1.26015 0.99245 1.05439 1.05070 0.89916 0.84360 0.81079 0.80949 0.83767 0.73623 0.82382 0.77655 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.15 13.96 21.63 0.30 -53.85 16 2 C 0.02 1.10 5.50 84.89 0.47 1.57 16 3 Si 0.98 42.70 28.62 68.60 1.96 44.66 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.24 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.41 -24.71 10.11 67.95 0.69 -24.03 16 8 H 0.06 4.32 7.09 -2.91 -0.02 4.30 16 9 O -0.24 -13.09 7.83 10.76 0.08 -13.00 16 10 C 0.45 22.57 7.82 70.21 0.55 23.12 16 11 O -0.57 -30.06 13.15 19.67 0.26 -29.80 16 12 C -0.16 -6.31 5.89 -20.00 -0.12 -6.43 16 13 C -0.06 -1.94 9.61 22.53 0.22 -1.72 16 14 C -0.13 -3.00 10.02 22.24 0.22 -2.78 16 15 C -0.06 -1.30 10.03 22.30 0.22 -1.08 16 16 C -0.14 -4.22 8.67 22.36 0.19 -4.03 16 17 C 0.18 6.64 6.30 38.65 0.24 6.89 16 18 N -0.66 -24.30 4.64 -306.07 -1.42 -25.72 16 19 C 0.57 20.11 7.63 86.58 0.66 20.77 16 20 O -0.55 -20.34 14.24 -4.15 -0.06 -20.40 16 21 C -0.18 -5.43 5.98 -19.87 -0.12 -5.54 16 22 C -0.10 -2.39 10.10 22.67 0.23 -2.17 16 23 C -0.23 -3.85 11.12 66.64 0.74 -3.11 16 24 S 0.25 4.62 23.02 -56.49 -1.30 3.32 16 25 C -0.22 -5.86 10.38 67.31 0.70 -5.17 16 26 H 0.29 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.14 4.38 7.62 -2.91 -0.02 4.35 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.14 4.27 6.24 -2.91 -0.02 4.25 16 31 H 0.42 16.01 4.84 -92.71 -0.45 15.56 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.16 4.71 7.02 -2.92 -0.02 4.69 16 Total: -1.00 -75.50 319.28 5.45 -70.05 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.73 Total: 28.42 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.90 Total: -3.69 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.12 Total: -79.57 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: 0.28 Total: -63.20 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.96 Total: 44.66 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.30 Total: 3.32 kcal Total: -75.50 5.45 -70.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012716641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.542 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds