Wall clock time and date at job start Tue Mar 31 2020 11:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00397 * 2 1 4 4 C 1.50694 * 109.46824 * 270.00224 * 3 2 1 5 5 H 1.07997 * 120.00661 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99432 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00237 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46997 * 119.99862 * 8 6 4 11 11 H 1.48493 * 109.47257 * 240.00228 * 8 6 4 12 12 C 1.34778 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00015 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99832 * 0.02562 * 12 2 1 15 15 O 1.42904 * 109.47109 * 179.97438 * 14 12 2 16 16 C 1.35945 * 117.00344 * 179.97438 * 15 14 12 17 17 C 1.38698 * 120.04311 * 0.27408 * 16 15 14 18 18 C 1.38149 * 119.97097 * 180.23552 * 17 16 15 19 19 C 1.38385 * 120.06093 * 359.48600 * 18 17 16 20 20 Cl 1.73597 * 119.95375 * 180.27892 * 19 18 17 21 21 C 1.38341 * 120.09069 * 0.25867 * 19 18 17 22 22 C 1.38256 * 120.03355 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03249 * 180.02562 * 22 21 19 24 24 H 1.08999 * 109.46907 * 270.00211 * 1 2 3 25 25 H 1.08998 * 109.46600 * 29.99795 * 1 2 3 26 26 H 1.08999 * 109.47190 * 150.00032 * 1 2 3 27 27 H 1.08998 * 109.46356 * 29.99867 * 3 2 1 28 28 H 1.08997 * 109.46766 * 149.99905 * 3 2 1 29 29 H 0.97001 * 119.99878 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47663 * 59.99963 * 14 12 2 31 31 H 1.09008 * 109.47101 * 299.99179 * 14 12 2 32 32 H 1.08002 * 120.02026 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.97347 * 179.77134 * 18 17 16 34 34 H 1.07999 * 119.98285 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6184 -0.6731 8 14 3.4381 3.4168 -3.4339 9 1 2.8609 2.4163 -4.3673 10 1 2.8000 4.7372 -3.6679 11 1 4.9006 3.5255 -3.6666 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 8 2.3139 -3.5585 0.0005 16 6 1.7943 -4.8148 0.0011 17 6 0.4194 -4.9975 -0.0042 18 6 -0.1070 -6.2748 0.0013 19 6 0.7362 -7.3721 0.0013 20 17 0.0716 -8.9758 0.0008 21 6 2.1079 -7.1928 0.0011 22 6 2.6389 -5.9162 0.0005 23 17 4.3603 -5.6912 -0.0003 24 1 -0.3633 0.0000 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0289 4.4447 -0.8503 30 1 0.7590 -2.5303 -0.8896 31 1 0.7584 -2.5299 0.8904 32 1 -0.2395 -4.1418 -0.0082 33 1 -1.1776 -6.4171 0.0010 34 1 2.7643 -8.0504 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:01 Heat of formation + Delta-G solvation = -53.456092 kcal Electronic energy + Delta-G solvation = -21096.159311 eV Core-core repulsion = 17467.698593 eV Total energy + Delta-G solvation = -3628.460719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62904 -39.07275 -37.74474 -36.77816 -36.26962 -34.92604 -32.70997 -31.38814 -30.43806 -28.92038 -27.26142 -25.76779 -23.57061 -22.94497 -22.24658 -18.86050 -18.76648 -17.02302 -16.80839 -16.73642 -16.24534 -15.97928 -15.30689 -15.02851 -14.55732 -14.40934 -14.31968 -13.74528 -13.44159 -12.85098 -12.70511 -12.58875 -12.35558 -12.23353 -12.00463 -11.75755 -11.52945 -11.28741 -11.23909 -10.97454 -10.96000 -10.85522 -10.65558 -10.21164 -9.68310 -9.33486 -9.06758 -8.48872 -8.41708 -7.79791 -6.09760 -4.14871 0.66654 0.75916 1.63260 2.09759 2.65865 3.08366 3.18237 3.27242 3.35501 3.39366 3.91458 4.31059 4.40327 4.41609 4.62391 4.82490 4.93027 4.94842 5.03917 5.21108 5.25385 5.33817 5.46634 5.65056 5.72721 5.76749 6.01016 6.06542 6.82497 7.03085 7.33796 7.41451 7.86038 8.15250 8.21653 8.79399 8.93927 9.50475 10.98506 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.002783 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.205532 B =10058.189182 C =10616.900332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.513 6.513 14 C 0.037 3.963 15 O -0.269 6.269 16 C 0.153 3.847 17 C -0.191 4.191 18 C -0.062 4.062 19 C -0.069 4.069 20 Cl -0.065 7.065 21 C -0.063 4.063 22 C -0.061 4.061 23 Cl -0.036 7.036 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.737 -21.520 2.886 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.387 6.387 14 C -0.041 4.041 15 O -0.180 6.180 16 C 0.104 3.896 17 C -0.210 4.210 18 C -0.081 4.081 19 C -0.096 4.096 20 Cl -0.036 7.036 21 C -0.082 4.082 22 C -0.089 4.089 23 Cl -0.007 7.007 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.669 -21.362 2.933 23.631 hybrid contribution -0.120 0.322 -0.991 1.049 sum -9.789 -21.039 1.941 23.286 Atomic orbital electron populations 1.21718 0.81239 1.02847 1.00719 1.48098 1.06261 1.07230 1.71628 1.19367 0.92655 0.77417 0.97779 1.21445 1.36797 1.06355 0.92176 0.92339 1.24941 0.95234 0.96357 0.97557 1.69938 1.38271 1.14305 1.30731 0.86423 0.78183 0.78291 0.84416 1.19774 1.20926 1.20795 1.19609 0.88187 0.84104 0.79110 1.90748 1.13306 1.86532 1.48151 1.22835 0.92175 0.85897 1.03213 1.86328 1.34209 1.10650 1.86811 1.18885 0.91330 0.85072 0.94271 1.21234 0.93175 0.98586 1.08020 1.20919 1.00342 0.90246 0.96608 1.20556 0.92721 0.86638 1.09734 1.98373 1.85589 1.22427 1.97187 1.20736 0.93662 0.95646 0.98202 1.20025 0.86497 0.91753 1.10640 1.98415 1.08130 1.97334 1.96835 0.93320 0.90188 0.92704 0.94573 0.93611 0.92668 0.89094 0.89217 0.83434 0.84002 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.24 59.85 0.61 1.71 16 2 N -0.60 -12.01 2.86 -182.96 -0.52 -12.53 16 3 C 0.25 6.26 5.16 -5.19 -0.03 6.24 16 4 C -0.53 -14.71 9.39 -34.44 -0.32 -15.04 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.51 10.23 7.75 -10.98 -0.09 10.14 16 13 O -0.51 -13.11 16.08 -14.35 -0.23 -13.34 16 14 C 0.04 0.52 3.77 36.01 0.14 0.66 16 15 O -0.27 -4.26 9.13 -39.48 -0.36 -4.62 16 16 C 0.15 1.93 6.68 -39.20 -0.26 1.67 16 17 C -0.19 -1.79 9.04 -39.44 -0.36 -2.15 16 18 C -0.06 -0.52 9.82 -39.56 -0.39 -0.90 16 19 C -0.07 -0.63 6.32 -39.49 -0.25 -0.88 16 20 Cl -0.06 -0.53 28.95 -51.86 -1.50 -2.03 16 21 C -0.06 -0.62 9.61 -39.54 -0.38 -1.00 16 22 C -0.06 -0.75 6.33 -39.37 -0.25 -1.00 16 23 Cl -0.04 -0.49 28.50 -51.86 -1.48 -1.97 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 31 H 0.09 0.94 7.64 -51.92 -0.40 0.55 16 32 H 0.15 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -33.69 330.46 -8.52 -42.22 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -3.46 Total: -4.90 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.67 Total: 1.07 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.21 Total: -38.04 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.59 Total: -17.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.98 Total: -4.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.69 -8.52 -42.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.241 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds