Wall clock time and date at job start Tue Mar 31 2020 11:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00397 * 2 1 4 4 C 1.50694 * 109.46824 * 270.00224 * 3 2 1 5 5 H 1.07997 * 120.00661 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99432 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00237 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46997 * 119.99862 * 8 6 4 11 11 H 1.48493 * 109.47257 * 240.00228 * 8 6 4 12 12 C 1.34778 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00015 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99832 * 0.02562 * 12 2 1 15 15 O 1.42904 * 109.47109 * 179.97438 * 14 12 2 16 16 C 1.35945 * 117.00344 * 179.97438 * 15 14 12 17 17 C 1.38698 * 120.04311 * 0.27408 * 16 15 14 18 18 C 1.38149 * 119.97097 * 180.23552 * 17 16 15 19 19 C 1.38385 * 120.06093 * 359.48600 * 18 17 16 20 20 Cl 1.73597 * 119.95375 * 180.27892 * 19 18 17 21 21 C 1.38341 * 120.09069 * 0.25867 * 19 18 17 22 22 C 1.38256 * 120.03355 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03249 * 180.02562 * 22 21 19 24 24 H 1.08999 * 109.46907 * 270.00211 * 1 2 3 25 25 H 1.08998 * 109.46600 * 29.99795 * 1 2 3 26 26 H 1.08999 * 109.47190 * 150.00032 * 1 2 3 27 27 H 1.08998 * 109.46356 * 29.99867 * 3 2 1 28 28 H 1.08997 * 109.46766 * 149.99905 * 3 2 1 29 29 H 0.97001 * 119.99878 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47663 * 59.99963 * 14 12 2 31 31 H 1.09008 * 109.47101 * 299.99179 * 14 12 2 32 32 H 1.08002 * 120.02026 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.97347 * 179.77134 * 18 17 16 34 34 H 1.07999 * 119.98285 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6184 -0.6731 8 14 3.4381 3.4168 -3.4339 9 1 2.8609 2.4163 -4.3673 10 1 2.8000 4.7372 -3.6679 11 1 4.9006 3.5255 -3.6666 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 8 2.3139 -3.5585 0.0005 16 6 1.7943 -4.8148 0.0011 17 6 0.4194 -4.9975 -0.0042 18 6 -0.1070 -6.2748 0.0013 19 6 0.7362 -7.3721 0.0013 20 17 0.0716 -8.9758 0.0008 21 6 2.1079 -7.1928 0.0011 22 6 2.6389 -5.9162 0.0005 23 17 4.3603 -5.6912 -0.0003 24 1 -0.3633 0.0000 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0289 4.4447 -0.8503 30 1 0.7590 -2.5303 -0.8896 31 1 0.7584 -2.5299 0.8904 32 1 -0.2395 -4.1418 -0.0082 33 1 -1.1776 -6.4171 0.0010 34 1 2.7643 -8.0504 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:00 Heat of formation + Delta-G solvation = -74.127562 kcal Electronic energy + Delta-G solvation = -21097.055694 eV Core-core repulsion = 17467.698593 eV Total energy + Delta-G solvation = -3629.357101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59447 -40.43672 -38.72675 -37.64263 -37.07011 -36.60951 -34.76438 -32.15292 -31.45477 -30.32580 -28.66234 -27.24253 -25.00509 -23.95455 -23.33886 -20.30174 -19.68542 -18.72595 -17.97605 -17.88445 -17.46569 -17.18834 -16.88390 -16.13984 -15.83275 -15.79765 -15.15791 -14.73768 -14.70824 -14.19741 -13.91155 -13.75992 -13.53549 -13.46528 -13.32746 -13.12696 -12.83467 -12.62562 -12.54653 -12.48107 -12.22277 -11.94396 -11.90724 -11.72154 -11.65051 -10.68272 -10.65950 -10.09011 -9.48136 -9.24790 -8.24003 -6.38419 -0.07212 -0.00619 0.87115 1.25799 1.36025 1.39060 1.49748 1.60277 1.69936 2.34495 2.36416 2.64056 3.06396 3.45189 3.62924 3.78845 3.95174 3.97744 4.07792 4.16419 4.43900 4.53132 4.60265 4.74765 4.95936 4.97481 5.00556 5.02291 5.21360 5.31774 5.52805 5.78771 6.03591 6.07770 6.65437 6.72521 7.25128 7.39849 8.83514 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.002783 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.205532 B =10058.189182 C =10616.900332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.285 1.285 12 C 0.493 3.507 13 O -0.585 6.585 14 C 0.051 3.949 15 O -0.308 6.308 16 C 0.129 3.871 17 C -0.180 4.180 18 C -0.053 4.053 19 C -0.070 4.070 20 Cl -0.054 7.054 21 C -0.064 4.064 22 C -0.081 4.081 23 Cl -0.064 7.064 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 -23.043 1.995 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.211 1.211 12 C 0.280 3.720 13 O -0.464 6.464 14 C -0.026 4.026 15 O -0.220 6.220 16 C 0.082 3.918 17 C -0.198 4.198 18 C -0.071 4.071 19 C -0.097 4.097 20 Cl -0.025 7.025 21 C -0.083 4.083 22 C -0.109 4.109 23 Cl -0.035 7.035 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.049 0.951 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.176 -22.911 2.046 26.509 hybrid contribution 0.862 0.682 -0.659 1.282 sum -12.314 -22.229 1.387 25.450 Atomic orbital electron populations 1.22108 0.77034 1.04717 1.03300 1.48082 1.08812 1.05606 1.71103 1.18810 0.91234 0.80085 0.96141 1.21736 1.36834 1.06446 0.93058 0.92652 1.25863 0.94924 0.96526 1.01932 1.70053 1.38986 1.14823 1.32981 0.85371 0.77774 0.78500 0.79190 1.18981 1.19261 1.21071 1.20778 0.87828 0.86157 0.77210 1.90708 1.16690 1.87805 1.51241 1.22781 0.90941 0.82043 1.06865 1.86265 1.35841 1.12033 1.87882 1.19131 0.92846 0.83685 0.96186 1.21559 0.91781 1.00154 1.06339 1.21304 1.01816 0.89346 0.94642 1.20726 0.92492 0.87572 1.08903 1.98384 1.85274 1.21806 1.97082 1.20848 0.94511 0.95092 0.97862 1.20250 0.85267 0.92874 1.12462 1.98400 1.10522 1.97474 1.97091 0.90315 0.91143 0.88056 0.95065 0.98575 0.92390 0.85457 0.84871 0.80275 0.80785 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.72 10.24 127.77 1.31 3.03 16 2 N -0.60 -24.01 2.86 -851.14 -2.43 -26.44 16 3 C 0.26 13.66 5.16 85.63 0.44 14.11 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 5 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.37 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 8 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 C 0.49 19.92 7.75 87.66 0.68 20.60 16 13 O -0.58 -31.45 16.08 16.00 0.26 -31.20 16 14 C 0.05 1.28 3.77 71.24 0.27 1.54 16 15 O -0.31 -9.44 9.13 -73.90 -0.67 -10.11 16 16 C 0.13 3.01 6.68 22.51 0.15 3.16 16 17 C -0.18 -2.60 9.04 22.36 0.20 -2.40 16 18 C -0.05 -0.64 9.82 22.28 0.22 -0.42 16 19 C -0.07 -1.06 6.32 22.33 0.14 -0.92 16 20 Cl -0.05 -0.74 28.95 -2.72 -0.08 -0.81 16 21 C -0.06 -1.17 9.61 22.30 0.21 -0.96 16 22 C -0.08 -1.93 6.33 22.41 0.14 -1.79 16 23 Cl -0.06 -1.80 28.50 -2.72 -0.08 -1.88 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.10 1.55 6.44 -2.39 -0.02 1.54 16 27 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 28 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.13 2.22 6.91 -2.39 -0.02 2.21 16 31 H 0.13 2.14 7.64 -2.38 -0.02 2.12 16 32 H 0.18 1.36 6.30 -2.91 -0.02 1.34 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -80.01 330.46 4.91 -75.10 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 1.14 Total: -1.86 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.47 Total: 6.18 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.15 Total: -82.19 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.42 Total: -41.31 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.16 Total: -2.69 kcal Total: -80.01 4.91 -75.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.972 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds