Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99821 * 2 1 4 4 C 1.50705 * 109.46922 * 269.99549 * 3 2 1 5 5 H 1.08003 * 119.99616 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00225 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99537 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00081 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47311 * 119.99856 * 8 6 4 11 11 H 1.48501 * 109.47450 * 239.99903 * 8 6 4 12 12 C 1.34772 * 120.00121 * 179.97438 * 2 1 3 13 13 O 1.21287 * 120.00190 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99850 * 0.02562 * 12 2 1 15 15 O 1.42908 * 109.46927 * 179.97438 * 14 12 2 16 16 C 1.35949 * 116.99711 * 179.97438 * 15 14 12 17 17 C 1.38795 * 120.06449 * 89.99509 * 16 15 14 18 18 Cl 1.73602 * 120.02971 * 359.70216 * 17 16 15 19 19 C 1.38259 * 119.93736 * 179.97438 * 17 16 15 20 20 C 1.38261 * 120.06498 * 0.02602 * 19 17 16 21 21 C 1.38259 * 120.12483 * 359.95475 * 20 19 17 22 22 C 1.38264 * 120.06459 * 0.04246 * 21 20 19 23 23 Cl 1.73595 * 120.03396 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47309 * 270.00351 * 1 2 3 25 25 H 1.09007 * 109.47310 * 30.00702 * 1 2 3 26 26 H 1.09005 * 109.47281 * 150.00424 * 1 2 3 27 27 H 1.09000 * 109.47446 * 29.99327 * 3 2 1 28 28 H 1.09000 * 109.47092 * 149.99977 * 3 2 1 29 29 H 0.97005 * 119.99503 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47433 * 59.99448 * 14 12 2 31 31 H 1.09001 * 109.46950 * 299.98708 * 14 12 2 32 32 H 1.08001 * 119.97088 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.93703 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.96920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0960 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6170 -0.6733 8 14 3.4376 3.4168 -3.4340 9 1 2.8587 2.4173 -4.3674 10 1 2.8006 4.7379 -3.6669 11 1 4.9001 3.5244 -3.6681 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 8 2.3140 -3.5584 0.0005 16 6 1.7944 -4.8147 0.0011 17 6 1.5281 -5.4575 -1.1999 18 17 1.8511 -4.6551 -2.7051 19 6 1.0001 -6.7353 -1.1963 20 6 0.7369 -7.3726 0.0021 21 6 1.0015 -6.7349 1.2000 22 6 1.5295 -5.4571 1.2025 23 17 1.8621 -4.6573 2.7070 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5140 26 1 -0.3634 -0.8901 -0.5138 27 1 1.6083 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 4.0318 4.4430 -0.8506 30 1 0.7590 -2.5302 -0.8896 31 1 0.7585 -2.5299 0.8904 32 1 0.7923 -7.2359 -2.1304 33 1 0.3241 -8.3706 0.0026 34 1 0.7953 -7.2352 2.1346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037386126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = -49.879707 kcal Electronic energy + Delta-G solvation = -21552.162619 eV Core-core repulsion = 17923.856984 eV Total energy + Delta-G solvation = -3628.305635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37582 -38.95500 -37.31369 -36.91893 -36.42944 -34.79567 -32.63607 -31.01358 -30.65165 -28.76641 -27.05291 -25.60077 -23.26754 -23.07281 -22.41006 -18.77105 -18.48651 -17.04645 -16.95247 -16.49304 -16.31013 -15.59784 -15.08983 -14.92478 -14.67172 -14.58498 -14.06137 -13.58525 -13.20491 -12.80235 -12.53451 -12.40297 -12.29067 -12.19735 -11.94641 -11.84982 -11.33939 -11.22448 -11.21222 -11.15360 -10.87138 -10.59763 -10.15992 -10.08600 -9.60703 -9.08300 -9.00553 -8.91924 -8.43104 -7.68585 -6.03821 -4.08433 0.55376 0.59145 1.63718 2.05916 2.81526 3.25879 3.30921 3.33990 3.39114 3.43915 4.09487 4.37759 4.46102 4.59936 4.72957 4.87538 4.97253 5.01749 5.16733 5.25668 5.31212 5.56026 5.59271 5.64746 5.77888 5.87672 6.03553 6.15860 6.95057 7.19712 7.42946 7.51716 7.92638 8.22806 8.33739 8.89442 9.04911 9.56598 11.04409 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003711 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.423634 B = 7542.360729 C = 8534.741891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.600 5.600 3 C 0.247 3.753 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.509 3.491 13 O -0.514 6.514 14 C 0.051 3.949 15 O -0.291 6.291 16 C 0.118 3.882 17 C -0.048 4.048 18 Cl -0.037 7.037 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.097 4.097 22 C -0.047 4.047 23 Cl -0.040 7.040 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 -22.648 2.868 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.334 5.334 3 C 0.128 3.872 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.294 3.706 13 O -0.389 6.389 14 C -0.027 4.027 15 O -0.206 6.206 16 C 0.071 3.929 17 C -0.075 4.075 18 Cl -0.008 7.008 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.075 4.075 23 Cl -0.011 7.011 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.257 -22.232 2.913 24.657 hybrid contribution -0.055 0.485 -0.990 1.104 sum -10.312 -21.746 1.923 24.144 Atomic orbital electron populations 1.21698 0.81370 1.02734 1.00623 1.48079 1.06183 1.07267 1.71886 1.19337 0.92626 0.77525 0.97671 1.21472 1.36525 1.06293 0.92270 0.92348 1.24933 0.95302 0.96385 0.97478 1.69944 1.38365 1.14354 1.30668 0.86437 0.78141 0.78259 0.84558 1.19799 1.20960 1.20822 1.19638 0.88160 0.84095 0.78750 1.90721 1.13346 1.86623 1.48222 1.22673 0.91733 0.85946 1.02311 1.86219 1.30982 1.09572 1.93874 1.18251 0.97236 0.87752 0.89637 1.21375 1.03158 0.95307 0.87706 1.98429 1.93839 1.79362 1.29147 1.21132 0.98101 0.92445 0.99847 1.21100 0.99877 1.00438 0.90835 1.21119 0.98191 0.92422 0.99831 1.21344 1.03316 0.95329 0.87516 1.98414 1.93691 1.79615 1.29367 0.93449 0.90290 0.92754 0.94688 0.93659 0.92746 0.90199 0.90344 0.83857 0.83838 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.85 0.61 1.86 16 2 N -0.60 -12.94 2.86 -182.95 -0.52 -13.47 16 3 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 4 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.51 11.15 7.75 -10.99 -0.09 11.06 16 13 O -0.51 -13.81 16.08 -14.36 -0.23 -14.04 16 14 C 0.05 0.84 5.09 36.01 0.18 1.02 16 15 O -0.29 -5.05 8.51 -39.49 -0.34 -5.39 16 16 C 0.12 1.61 5.71 -39.17 -0.22 1.39 16 17 C -0.05 -0.57 6.33 -39.37 -0.25 -0.82 16 18 Cl -0.04 -0.49 28.50 -51.86 -1.48 -1.97 16 19 C -0.10 -0.80 9.83 -39.57 -0.39 -1.19 16 20 C -0.10 -0.70 10.04 -39.57 -0.40 -1.10 16 21 C -0.10 -0.79 9.83 -39.56 -0.39 -1.18 16 22 C -0.05 -0.55 6.33 -39.37 -0.25 -0.80 16 23 Cl -0.04 -0.50 28.50 -51.86 -1.48 -1.97 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.25 8.07 -51.93 -0.42 0.84 16 26 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.16 7.40 -51.93 -0.38 0.78 16 31 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -34.87 333.71 -8.53 -43.41 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -3.60 Total: -5.64 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.63 Total: 2.98 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.21 Total: -39.53 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.57 Total: -19.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.96 Total: -3.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.87 -8.53 -43.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037386126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.473 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds