Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99821 * 2 1 4 4 C 1.50705 * 109.46922 * 269.99549 * 3 2 1 5 5 H 1.08003 * 119.99616 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00225 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99537 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00081 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47311 * 119.99856 * 8 6 4 11 11 H 1.48501 * 109.47450 * 239.99903 * 8 6 4 12 12 C 1.34772 * 120.00121 * 179.97438 * 2 1 3 13 13 O 1.21287 * 120.00190 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99850 * 0.02562 * 12 2 1 15 15 O 1.42908 * 109.46927 * 179.97438 * 14 12 2 16 16 C 1.35949 * 116.99711 * 179.97438 * 15 14 12 17 17 C 1.38795 * 120.06449 * 89.99509 * 16 15 14 18 18 Cl 1.73602 * 120.02971 * 359.70216 * 17 16 15 19 19 C 1.38259 * 119.93736 * 179.97438 * 17 16 15 20 20 C 1.38261 * 120.06498 * 0.02602 * 19 17 16 21 21 C 1.38259 * 120.12483 * 359.95475 * 20 19 17 22 22 C 1.38264 * 120.06459 * 0.04246 * 21 20 19 23 23 Cl 1.73595 * 120.03396 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47309 * 270.00351 * 1 2 3 25 25 H 1.09007 * 109.47310 * 30.00702 * 1 2 3 26 26 H 1.09005 * 109.47281 * 150.00424 * 1 2 3 27 27 H 1.09000 * 109.47446 * 29.99327 * 3 2 1 28 28 H 1.09000 * 109.47092 * 149.99977 * 3 2 1 29 29 H 0.97005 * 119.99503 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47433 * 59.99448 * 14 12 2 31 31 H 1.09001 * 109.46950 * 299.98708 * 14 12 2 32 32 H 1.08001 * 119.97088 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.93703 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.96920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0960 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.5550 3.6170 -0.6733 8 14 3.4376 3.4168 -3.4340 9 1 2.8587 2.4173 -4.3674 10 1 2.8006 4.7379 -3.6669 11 1 4.9001 3.5244 -3.6681 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 8 2.3140 -3.5584 0.0005 16 6 1.7944 -4.8147 0.0011 17 6 1.5281 -5.4575 -1.1999 18 17 1.8511 -4.6551 -2.7051 19 6 1.0001 -6.7353 -1.1963 20 6 0.7369 -7.3726 0.0021 21 6 1.0015 -6.7349 1.2000 22 6 1.5295 -5.4571 1.2025 23 17 1.8621 -4.6573 2.7070 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5140 26 1 -0.3634 -0.8901 -0.5138 27 1 1.6083 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 4.0318 4.4430 -0.8506 30 1 0.7590 -2.5302 -0.8896 31 1 0.7585 -2.5299 0.8904 32 1 0.7923 -7.2359 -2.1304 33 1 0.3241 -8.3706 0.0026 34 1 0.7953 -7.2352 2.1346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037386126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = -71.489756 kcal Electronic energy + Delta-G solvation = -21553.099701 eV Core-core repulsion = 17923.856984 eV Total energy + Delta-G solvation = -3629.242717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40337 -40.45283 -38.42713 -37.80359 -37.29896 -36.62948 -34.77547 -31.73863 -31.69258 -30.36904 -28.58149 -27.25858 -24.79227 -24.00935 -23.51044 -20.42991 -19.48290 -18.73665 -17.99670 -17.86069 -17.75519 -17.11482 -16.54258 -16.42985 -15.72485 -15.45600 -15.39281 -14.96432 -14.49302 -14.11751 -13.87338 -13.76276 -13.50984 -13.43579 -13.36748 -13.15379 -12.89424 -12.79603 -12.56969 -12.23885 -12.17781 -12.13920 -12.04572 -11.71202 -11.17858 -10.69803 -10.66570 -9.84851 -9.82611 -9.51020 -8.24645 -6.39179 -0.23951 -0.12654 0.79386 1.21643 1.34772 1.37806 1.49061 1.65561 1.77357 2.31378 2.38191 2.79913 3.05363 3.56314 3.72473 3.84040 3.89281 4.08045 4.09060 4.16910 4.30674 4.36717 4.66713 4.89859 4.91687 4.95432 5.00340 5.14395 5.19263 5.45343 5.51518 5.77475 6.02852 6.11463 6.62508 6.70398 7.23199 7.37853 8.83044 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003711 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.423634 B = 7542.360729 C = 8534.741891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.605 5.605 3 C 0.261 3.739 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.499 3.501 13 O -0.579 6.579 14 C 0.069 3.931 15 O -0.322 6.322 16 C 0.082 3.918 17 C -0.061 4.061 18 Cl -0.061 7.061 19 C -0.088 4.088 20 C -0.081 4.081 21 C -0.087 4.087 22 C -0.059 4.059 23 Cl -0.058 7.058 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.032 0.968 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.190 0.810 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 -25.413 2.071 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.338 5.338 3 C 0.140 3.860 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.286 3.714 13 O -0.459 6.459 14 C -0.008 4.008 15 O -0.238 6.238 16 C 0.037 3.963 17 C -0.089 4.089 18 Cl -0.032 7.032 19 C -0.107 4.107 20 C -0.099 4.099 21 C -0.106 4.106 22 C -0.087 4.087 23 Cl -0.029 7.029 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.050 0.950 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.188 0.812 33 H 0.208 0.792 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.749 -25.015 2.123 28.156 hybrid contribution 0.644 1.192 -0.676 1.514 sum -12.105 -23.823 1.448 26.761 Atomic orbital electron populations 1.22042 0.77469 1.04335 1.03077 1.48087 1.08604 1.05802 1.71289 1.18815 0.91175 0.79803 0.96239 1.21724 1.36989 1.06594 0.92954 0.92882 1.25854 0.94805 0.96397 1.02038 1.70056 1.38839 1.14841 1.32966 0.85364 0.77889 0.78477 0.79053 1.19228 1.19079 1.20814 1.20632 0.87800 0.85873 0.77056 1.90674 1.16328 1.87757 1.51098 1.22438 0.90757 0.83273 1.04371 1.86182 1.32235 1.11104 1.94315 1.18516 1.00073 0.86560 0.91165 1.21551 1.04599 0.96556 0.86172 1.98417 1.94168 1.80141 1.30452 1.21537 0.96372 0.90878 1.01898 1.21643 0.97322 1.01659 0.89229 1.21542 0.96327 0.90856 1.01862 1.21514 1.04490 0.96533 0.86136 1.98406 1.93959 1.80272 1.30251 0.90498 0.90652 0.89212 0.95049 0.98425 0.92329 0.88191 0.87623 0.81212 0.79238 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.17 10.24 127.77 1.31 3.48 16 2 N -0.60 -26.71 2.86 -851.11 -2.43 -29.14 16 3 C 0.26 14.47 5.16 85.63 0.44 14.91 16 4 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.48 5.46 84.66 0.46 0.94 16 7 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 8 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 C 0.50 22.59 7.75 87.66 0.68 23.26 16 13 O -0.58 -33.06 16.08 15.98 0.26 -32.81 16 14 C 0.07 2.23 5.09 71.24 0.36 2.60 16 15 O -0.32 -11.33 8.51 -73.94 -0.63 -11.96 16 16 C 0.08 2.18 5.71 22.53 0.13 2.31 16 17 C -0.06 -1.35 6.33 22.41 0.14 -1.21 16 18 Cl -0.06 -1.58 28.50 -2.72 -0.08 -1.66 16 19 C -0.09 -1.14 9.83 22.28 0.22 -0.92 16 20 C -0.08 -0.67 10.04 22.28 0.22 -0.44 16 21 C -0.09 -1.08 9.83 22.28 0.22 -0.86 16 22 C -0.06 -1.26 6.33 22.41 0.14 -1.12 16 23 Cl -0.06 -1.39 28.50 -2.72 -0.08 -1.47 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 26 H 0.09 2.05 6.44 -2.38 -0.02 2.03 16 27 H 0.03 1.73 8.07 -2.39 -0.02 1.72 16 28 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 29 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 30 H 0.10 2.79 7.40 -2.39 -0.02 2.78 16 31 H 0.11 2.79 8.11 -2.39 -0.02 2.77 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 33 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -82.03 333.71 5.05 -76.98 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.13 Total: -2.14 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.57 Total: 10.99 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -2.15 Total: -85.90 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.37 Total: -44.76 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.16 Total: -3.13 kcal Total: -82.03 5.05 -76.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037386126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.494 kcal (2) G-P(sol) polarization free energy of solvation -82.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds