Wall clock time and date at job start Tue Mar 31 2020 11:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99798 * 2 1 4 4 C 1.50703 * 109.46841 * 269.99673 * 3 2 1 5 5 H 1.07997 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00160 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00038 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00419 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47021 * 59.99314 * 8 6 4 10 10 H 1.48496 * 109.47781 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46872 * 300.00081 * 8 6 4 12 12 C 1.34767 * 120.00185 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00305 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00316 * 0.02562 * 12 2 1 15 15 O 1.42896 * 109.47569 * 179.97438 * 14 12 2 16 16 C 1.35916 * 117.00381 * 180.02562 * 15 14 12 17 17 C 1.38749 * 120.03451 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.98189 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.05814 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 119.96592 * 180.27823 * 19 18 17 21 21 C 1.38465 * 120.06991 * 0.02562 * 19 18 17 22 22 Cl 1.73599 * 119.98882 * 180.02562 * 21 19 18 23 23 C 1.38272 * 120.01599 * 359.97438 * 21 19 18 24 24 H 1.08999 * 109.47933 * 270.00394 * 1 2 3 25 25 H 1.09000 * 109.47417 * 30.00784 * 1 2 3 26 26 H 1.09004 * 109.47077 * 150.00645 * 1 2 3 27 27 H 1.09000 * 109.47221 * 29.98876 * 3 2 1 28 28 H 1.08995 * 109.47604 * 149.99623 * 3 2 1 29 29 H 0.97002 * 120.00572 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46917 * 59.99881 * 14 12 2 31 31 H 1.08999 * 109.47480 * 300.00372 * 14 12 2 32 32 H 1.08005 * 120.01261 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97447 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.02305 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5541 3.6176 -0.6734 8 14 3.4388 3.4162 -3.4341 9 1 2.1415 3.5939 -4.1345 10 1 4.1812 4.7023 -3.4342 11 1 4.2413 2.3808 -4.1336 12 6 2.1388 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4722 0.0005 15 8 2.3140 -3.5584 0.0005 16 6 1.7946 -4.8144 0.0000 17 6 0.4192 -4.9971 -0.0011 18 6 -0.1075 -6.2741 -0.0022 19 6 0.7353 -7.3713 -0.0027 20 17 0.0708 -8.9751 -0.0114 21 6 2.1083 -7.1916 -0.0017 22 17 3.1638 -8.5699 -0.0031 23 6 2.6387 -5.9147 -0.0006 24 1 -0.3635 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5137 27 1 1.6082 2.0285 0.5137 28 1 3.1498 1.1386 0.5138 29 1 4.0309 4.4435 -0.8506 30 1 0.7591 -2.5302 -0.8897 31 1 0.7584 -2.5299 0.8902 32 1 -0.2395 -4.1412 -0.0019 33 1 -1.1781 -6.4162 -0.0034 34 1 3.7096 -5.7744 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037975752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:09 Heat of formation + Delta-G solvation = -74.871935 kcal Electronic energy + Delta-G solvation = -20909.541779 eV Core-core repulsion = 17280.152399 eV Total energy + Delta-G solvation = -3629.389379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59604 -40.44823 -38.87021 -37.58006 -37.16774 -36.61255 -34.76241 -32.33174 -31.27794 -30.37409 -28.67613 -27.24051 -24.96576 -24.11187 -23.26821 -20.31612 -19.69507 -18.71922 -18.00241 -17.80798 -17.44080 -17.20781 -16.90283 -16.15263 -16.04803 -15.80096 -14.93480 -14.90710 -14.77323 -14.25907 -13.98967 -13.76756 -13.56186 -13.46354 -13.14116 -12.94597 -12.89785 -12.74014 -12.60313 -12.50555 -12.20063 -12.09795 -11.88478 -11.75461 -11.64540 -10.69279 -10.64594 -10.08365 -9.48724 -9.31353 -8.23336 -6.38094 -0.14634 0.02037 0.74226 1.08704 1.37245 1.41657 1.48372 1.64805 1.70571 2.33893 2.37250 2.68413 3.06984 3.44343 3.60736 3.75883 3.98103 3.98733 4.08752 4.12915 4.44358 4.55061 4.65480 4.75280 4.93373 4.96159 5.01208 5.05326 5.20842 5.24461 5.52482 5.78861 6.03768 6.13994 6.65130 6.72350 7.24861 7.39263 8.83760 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.002459 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.610364 B =11383.427687 C =11794.094814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.257 1.257 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.492 3.508 13 O -0.588 6.588 14 C 0.052 3.948 15 O -0.315 6.315 16 C 0.138 3.862 17 C -0.184 4.184 18 C -0.046 4.046 19 C -0.080 4.080 20 Cl -0.050 7.050 21 C 0.001 3.999 22 Cl -0.045 7.045 23 C -0.150 4.150 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -22.596 1.978 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.280 3.720 13 O -0.468 6.468 14 C -0.025 4.025 15 O -0.227 6.227 16 C 0.092 3.908 17 C -0.203 4.203 18 C -0.065 4.065 19 C -0.108 4.108 20 Cl -0.021 7.021 21 C -0.027 4.027 22 Cl -0.016 7.016 23 C -0.169 4.169 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.015 0.985 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.196 0.804 33 H 0.196 0.804 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.121 -22.609 2.032 26.220 hybrid contribution 0.817 0.481 -0.669 1.161 sum -12.304 -22.128 1.362 25.356 Atomic orbital electron populations 1.22118 0.76989 1.04759 1.03347 1.48082 1.08844 1.05624 1.70967 1.18811 0.91252 0.80091 0.96134 1.21689 1.37029 1.06567 0.93079 0.92585 1.25858 0.94887 0.96497 1.01937 1.70036 1.38826 1.14828 1.33117 0.85482 0.78942 0.77278 0.79215 1.18168 1.20484 1.20504 1.20810 0.87811 0.86220 0.77159 1.90700 1.16757 1.87865 1.51466 1.22775 0.90882 0.81868 1.06981 1.86181 1.36210 1.12251 1.88075 1.19077 0.92844 0.83789 0.95093 1.21705 0.92883 0.99822 1.05865 1.21174 1.01452 0.88942 0.94899 1.20806 0.91115 0.88485 1.10359 1.98381 1.85152 1.21582 1.97002 1.20417 0.89898 0.88740 1.03634 1.98394 1.65499 1.41140 1.96600 1.20233 1.01315 0.88467 1.06923 0.90275 0.91163 0.87970 0.95061 0.98540 0.92368 0.85372 0.84791 0.80375 0.80387 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.66 10.24 127.77 1.31 2.97 16 2 N -0.60 -23.55 2.86 -851.15 -2.43 -25.98 16 3 C 0.26 13.50 5.16 85.63 0.44 13.94 16 4 C -0.55 -30.69 9.39 25.60 0.24 -30.45 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.49 19.45 7.75 87.66 0.68 20.13 16 13 O -0.59 -31.05 16.08 15.99 0.26 -30.79 16 14 C 0.05 1.25 3.77 71.24 0.27 1.52 16 15 O -0.31 -9.17 9.67 -73.57 -0.71 -9.89 16 16 C 0.14 3.07 6.69 22.50 0.15 3.22 16 17 C -0.18 -2.60 9.04 22.37 0.20 -2.40 16 18 C -0.05 -0.59 9.82 22.27 0.22 -0.37 16 19 C -0.08 -1.38 6.32 22.35 0.14 -1.24 16 20 Cl -0.05 -0.81 27.95 -2.72 -0.08 -0.88 16 21 C 0.00 0.02 6.32 22.33 0.14 0.16 16 22 Cl -0.05 -0.91 27.95 -2.72 -0.08 -0.98 16 23 C -0.15 -3.43 9.77 22.38 0.22 -3.21 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 26 H 0.10 1.49 6.44 -2.39 -0.02 1.48 16 27 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 28 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.13 2.10 6.92 -2.39 -0.02 2.08 16 31 H 0.13 2.01 7.63 -2.39 -0.02 1.99 16 32 H 0.18 1.25 6.30 -2.91 -0.02 1.24 16 33 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -78.17 329.61 4.88 -73.29 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.14 Total: -0.83 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.47 Total: 5.14 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.15 Total: -81.30 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.45 Total: -40.68 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.15 Total: -1.87 kcal Total: -78.17 4.88 -73.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037975752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.587 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds