Wall clock time and date at job start Tue Mar 31 2020 11:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.50703 * 109.47064 * 90.00051 * 3 2 1 5 5 C 1.38459 * 120.01976 * 89.99990 * 4 3 2 6 6 F 1.35096 * 120.01818 * 359.97438 * 5 4 3 7 7 C 1.38443 * 119.96169 * 179.97438 * 5 4 3 8 8 C 1.38231 * 120.00353 * 359.97438 * 7 5 4 9 9 C 1.38206 * 120.03621 * 359.97438 * 8 7 5 10 10 C 1.38291 * 120.01607 * 269.72116 * 4 3 2 11 11 Cl 1.73602 * 120.00435 * 0.02562 * 10 4 3 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99579 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00055 * 0.02562 * 12 2 1 15 15 S 1.81003 * 109.46854 * 179.97438 * 14 12 2 16 16 C 1.76206 * 99.99799 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99713 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00474 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47545 * 119.99580 * 20 18 16 23 23 H 1.48502 * 109.47131 * 239.99975 * 20 18 16 24 24 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 25 25 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 26 26 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 27 27 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 28 28 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 29 29 H 1.08003 * 120.00056 * 179.97438 * 7 5 4 30 30 H 1.07991 * 119.98233 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.98254 * 180.02562 * 9 8 7 32 32 H 1.08995 * 109.46788 * 299.99564 * 14 12 2 33 33 H 1.08992 * 109.47134 * 59.99783 * 14 12 2 34 34 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 6 3.6023 1.3045 2.0739 6 9 4.5032 0.5241 1.4380 7 6 3.8320 1.7053 3.3790 8 6 2.9102 2.5041 4.0292 9 6 1.7591 2.9037 3.3770 10 6 1.5295 2.5070 2.0711 11 17 0.0858 3.0137 1.2511 12 6 2.1388 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 16 2.5617 -3.8479 0.0005 16 6 1.4417 -5.2082 0.0013 17 1 0.3764 -5.0305 0.0012 18 6 1.9285 -6.5080 0.0020 19 7 3.2268 -6.7246 0.0017 20 14 0.7411 -7.9501 0.0021 21 1 -0.6544 -7.4422 0.0020 22 1 0.9672 -8.7777 -1.2099 23 1 0.9664 -8.7767 1.2151 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.1498 1.1385 -0.5138 28 1 1.6083 2.0285 -0.5138 29 1 4.7315 1.3937 3.8892 30 1 3.0899 2.8169 5.0471 31 1 1.0396 3.5282 3.8857 32 1 0.7585 -2.5298 0.8903 33 1 0.7591 -2.5302 -0.8896 34 1 3.5670 -7.6329 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041764934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:02 Heat of formation + Delta-G solvation = -54.718268 kcal Electronic energy + Delta-G solvation = -21657.619451 eV Core-core repulsion = 18043.520496 eV Total energy + Delta-G solvation = -3614.098955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.76179 -39.91205 -38.86497 -36.83152 -35.39580 -32.41019 -32.34663 -30.65204 -29.30591 -27.22247 -25.68278 -25.24996 -23.05529 -22.05721 -19.25215 -17.83993 -17.66756 -16.98675 -16.45297 -16.32744 -15.92592 -15.25564 -15.19137 -14.91383 -14.78850 -13.97786 -13.83908 -13.64309 -13.45696 -13.02873 -12.87037 -12.69976 -12.56905 -12.30129 -12.00889 -11.68881 -11.57788 -11.40816 -11.05859 -11.00075 -10.99205 -10.73969 -9.77969 -9.50452 -9.05540 -9.03212 -8.89235 -8.54332 -8.19044 -6.47248 -6.19807 -3.89884 0.69023 0.81981 1.68829 2.90567 3.09117 3.21141 3.22598 3.30350 3.35817 3.68942 4.13017 4.22116 4.37304 4.45922 4.61235 4.91705 4.94381 5.15235 5.16083 5.19515 5.27091 5.45966 5.59128 5.64905 5.67249 5.74822 5.79173 5.89914 5.92249 5.94723 6.16922 6.49745 6.59798 7.54437 7.61826 8.37327 8.59846 9.25604 10.87653 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003500 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.935320 B = 7998.092324 C = 8591.333596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.618 5.618 3 C 0.155 3.845 4 C -0.138 4.138 5 C 0.141 3.859 6 F -0.104 7.104 7 C -0.156 4.156 8 C -0.076 4.076 9 C -0.130 4.130 10 C 0.001 3.999 11 Cl -0.056 7.056 12 C 0.527 3.473 13 O -0.500 6.500 14 C -0.148 4.148 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 22.705 5.830 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.354 5.354 3 C 0.031 3.969 4 C -0.141 4.141 5 C 0.120 3.880 6 F -0.082 7.082 7 C -0.175 4.175 8 C -0.095 4.095 9 C -0.148 4.148 10 C -0.026 4.026 11 Cl -0.027 7.027 12 C 0.315 3.685 13 O -0.373 6.373 14 C -0.298 4.298 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.821 22.561 5.694 23.580 hybrid contribution -2.273 -1.031 -0.070 2.497 sum -6.094 21.530 5.624 23.071 Atomic orbital electron populations 1.22004 0.79531 1.03765 1.01979 1.47864 1.06785 1.04789 1.75941 1.20187 0.99632 0.86306 0.90735 1.20204 0.94079 1.00339 0.99463 1.17481 0.87728 0.91771 0.91003 1.91709 1.64531 1.70740 1.81229 1.21362 1.02032 1.00527 0.93532 1.20960 0.92510 0.95968 1.00027 1.21046 0.98914 1.02102 0.92780 1.20533 0.89172 0.99441 0.93485 1.98357 1.36183 1.89251 1.78916 1.20445 0.88166 0.84523 0.75369 1.90744 1.13301 1.86546 1.46700 1.23541 1.04509 0.97162 1.04630 1.85403 1.08017 0.93279 1.96680 1.22906 0.94351 0.92244 1.58736 0.90943 1.24983 0.95643 0.98349 0.94575 1.70029 1.11722 1.21514 1.47020 0.86131 0.80385 0.81170 0.77892 1.19622 1.20562 1.20583 0.92608 0.90720 0.90806 0.88234 0.88983 0.83945 0.84087 0.84357 0.89432 0.89295 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.24 59.84 0.61 1.43 16 2 N -0.62 -9.24 2.86 -182.95 -0.52 -9.77 16 3 C 0.15 2.04 5.01 -5.19 -0.03 2.01 16 4 C -0.14 -1.74 5.47 -104.52 -0.57 -2.32 16 5 C 0.14 1.94 7.24 -39.42 -0.29 1.66 16 6 F -0.10 -1.81 14.20 2.25 0.03 -1.77 16 7 C -0.16 -1.67 10.03 -39.51 -0.40 -2.06 16 8 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 9 C -0.13 -1.11 9.83 -39.54 -0.39 -1.50 16 10 C 0.00 0.01 6.31 -39.50 -0.25 -0.24 16 11 Cl -0.06 -0.50 24.56 -51.86 -1.27 -1.78 16 12 C 0.53 10.33 7.69 -10.99 -0.08 10.24 16 13 O -0.50 -11.46 13.17 5.55 0.07 -11.39 16 14 C -0.15 -3.10 4.71 36.00 0.17 -2.93 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 26 H 0.07 0.74 5.02 -51.93 -0.26 0.48 16 27 H 0.10 1.47 6.92 -51.93 -0.36 1.11 16 28 H 0.09 0.98 6.82 -51.93 -0.35 0.62 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.09 1.72 7.40 -51.92 -0.38 1.34 16 33 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -34.48 320.17 -8.14 -42.62 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.35 Total: -1.96 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.42 Total: -7.79 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.21 Total: -35.41 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.27 Total: -1.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.48 -8.14 -42.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041764934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.102 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds