Wall clock time and date at job start Tue Mar 31 2020 11:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.50703 * 109.47064 * 90.00051 * 3 2 1 5 5 C 1.38459 * 120.01976 * 89.99990 * 4 3 2 6 6 F 1.35096 * 120.01818 * 359.97438 * 5 4 3 7 7 C 1.38443 * 119.96169 * 179.97438 * 5 4 3 8 8 C 1.38231 * 120.00353 * 359.97438 * 7 5 4 9 9 C 1.38206 * 120.03621 * 359.97438 * 8 7 5 10 10 C 1.38291 * 120.01607 * 269.72116 * 4 3 2 11 11 Cl 1.73602 * 120.00435 * 0.02562 * 10 4 3 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99579 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00055 * 0.02562 * 12 2 1 15 15 S 1.81003 * 109.46854 * 179.97438 * 14 12 2 16 16 C 1.76206 * 99.99799 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99713 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00474 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47545 * 119.99580 * 20 18 16 23 23 H 1.48502 * 109.47131 * 239.99975 * 20 18 16 24 24 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 25 25 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 26 26 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 27 27 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 28 28 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 29 29 H 1.08003 * 120.00056 * 179.97438 * 7 5 4 30 30 H 1.07991 * 119.98233 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.98254 * 180.02562 * 9 8 7 32 32 H 1.08995 * 109.46788 * 299.99564 * 14 12 2 33 33 H 1.08992 * 109.47134 * 59.99783 * 14 12 2 34 34 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 6 3.6023 1.3045 2.0739 6 9 4.5032 0.5241 1.4380 7 6 3.8320 1.7053 3.3790 8 6 2.9102 2.5041 4.0292 9 6 1.7591 2.9037 3.3770 10 6 1.5295 2.5070 2.0711 11 17 0.0858 3.0137 1.2511 12 6 2.1388 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 16 2.5617 -3.8479 0.0005 16 6 1.4417 -5.2082 0.0013 17 1 0.3764 -5.0305 0.0012 18 6 1.9285 -6.5080 0.0020 19 7 3.2268 -6.7246 0.0017 20 14 0.7411 -7.9501 0.0021 21 1 -0.6544 -7.4422 0.0020 22 1 0.9672 -8.7777 -1.2099 23 1 0.9664 -8.7767 1.2151 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.1498 1.1385 -0.5138 28 1 1.6083 2.0285 -0.5138 29 1 4.7315 1.3937 3.8892 30 1 3.0899 2.8169 5.0471 31 1 1.0396 3.5282 3.8857 32 1 0.7585 -2.5298 0.8903 33 1 0.7591 -2.5302 -0.8896 34 1 3.5670 -7.6329 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041764934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:02 Heat of formation + Delta-G solvation = -75.870640 kcal Electronic energy + Delta-G solvation = -21658.536687 eV Core-core repulsion = 18043.520496 eV Total energy + Delta-G solvation = -3615.016191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87508 -41.08066 -39.95697 -37.58540 -36.70415 -34.59307 -33.37183 -31.45415 -30.77336 -28.28466 -27.70678 -26.56953 -23.88677 -22.98869 -20.72844 -19.55930 -18.74274 -18.23695 -17.62482 -17.36956 -17.16769 -16.88839 -16.46220 -16.35080 -15.82454 -15.78398 -14.93202 -14.69021 -14.58039 -14.51421 -14.09174 -13.90435 -13.63891 -13.50083 -13.25012 -13.14587 -12.92260 -12.71955 -12.56469 -12.44473 -12.27142 -11.78616 -11.70992 -11.16392 -10.94400 -10.26976 -10.02726 -9.74143 -9.72982 -8.67983 -8.35224 -6.13666 -0.11803 -0.01856 0.91026 1.25507 1.40899 1.45485 1.57059 1.57794 2.06698 2.26552 2.47998 2.98912 3.25037 3.27791 3.49429 3.55849 3.81230 3.87210 4.16237 4.18674 4.27483 4.32008 4.38326 4.44794 4.53083 4.67384 4.85760 4.87809 5.00137 5.07714 5.17894 5.41025 5.42437 5.69072 6.18917 6.22016 7.05890 7.13326 8.74348 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003500 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.935320 B = 7998.092324 C = 8591.333596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.155 3.845 4 C -0.153 4.153 5 C 0.097 3.903 6 F -0.138 7.138 7 C -0.161 4.161 8 C -0.062 4.062 9 C -0.119 4.119 10 C -0.003 4.003 11 Cl -0.042 7.042 12 C 0.524 3.476 13 O -0.543 6.543 14 C -0.121 4.121 15 S -0.150 6.150 16 C -0.545 4.545 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 24.221 7.143 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.340 5.340 3 C 0.033 3.967 4 C -0.156 4.156 5 C 0.077 3.923 6 F -0.116 7.116 7 C -0.180 4.180 8 C -0.080 4.080 9 C -0.137 4.137 10 C -0.030 4.030 11 Cl -0.012 7.012 12 C 0.311 3.689 13 O -0.420 6.420 14 C -0.272 4.272 15 S 0.077 5.923 16 C -0.693 4.693 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.198 0.802 31 H 0.189 0.811 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.013 24.128 7.007 26.085 hybrid contribution -1.353 -1.293 -0.428 1.920 sum -8.366 22.835 6.579 25.193 Atomic orbital electron populations 1.22283 0.77113 1.04788 1.03658 1.47821 1.08200 1.03995 1.73944 1.20271 0.98815 0.85791 0.91859 1.20119 0.94679 1.01748 0.99045 1.18007 0.88372 0.93299 0.92592 1.91621 1.65810 1.72104 1.82087 1.21626 1.03163 1.00754 0.92445 1.21432 0.91273 0.93971 1.01371 1.21504 0.99253 1.01081 0.91876 1.20655 0.89169 0.98985 0.94236 1.98360 1.35097 1.88933 1.78843 1.20245 0.87603 0.85375 0.75639 1.90740 1.15024 1.87167 1.49033 1.23351 1.02702 0.95069 1.06100 1.85599 1.12513 0.97145 1.97003 1.23224 0.94589 0.92663 1.58849 0.90010 1.26129 0.97595 1.01655 0.93677 1.70194 1.14141 1.22423 1.48058 0.84900 0.78169 0.76711 0.78124 1.17990 1.19866 1.19863 0.90567 0.90682 0.88855 0.90778 0.86184 0.83078 0.80156 0.81083 0.87893 0.87547 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 10.24 127.77 1.31 2.63 16 2 N -0.61 -17.80 2.86 -851.10 -2.43 -20.23 16 3 C 0.16 4.09 5.01 85.63 0.43 4.52 16 4 C -0.15 -3.82 5.47 -19.80 -0.11 -3.92 16 5 C 0.10 2.78 7.24 22.37 0.16 2.95 16 6 F -0.14 -5.20 14.20 44.97 0.64 -4.56 16 7 C -0.16 -3.33 10.03 22.32 0.22 -3.11 16 8 C -0.06 -0.84 10.04 22.26 0.22 -0.61 16 9 C -0.12 -1.60 9.83 22.30 0.22 -1.38 16 10 C 0.00 -0.06 6.31 22.32 0.14 0.09 16 11 Cl -0.04 -0.62 24.56 -2.72 -0.07 -0.68 16 12 C 0.52 20.99 7.69 87.66 0.67 21.67 16 13 O -0.54 -26.36 13.17 -3.06 -0.04 -26.40 16 14 C -0.12 -5.10 4.71 71.23 0.34 -4.77 16 15 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 16 C -0.55 -31.74 9.50 67.95 0.65 -31.09 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 20 Si 1.00 44.09 29.55 68.60 2.03 46.11 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.60 6.44 -2.38 -0.02 1.58 16 26 H 0.09 1.60 5.02 -2.39 -0.01 1.58 16 27 H 0.07 2.34 6.92 -2.39 -0.02 2.33 16 28 H 0.12 2.39 6.82 -2.39 -0.02 2.37 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.10 3.99 7.40 -2.40 -0.02 3.97 16 33 H 0.11 4.07 8.11 -2.40 -0.02 4.05 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -79.36 320.17 5.11 -74.25 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.14 Total: 9.52 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.72 Total: -11.75 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -2.15 Total: -76.74 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.04 Total: -26.40 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.64 Total: -4.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.68 kcal Total: -79.36 5.11 -74.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041764934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.625 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds