Wall clock time and date at job start Tue Mar 31 2020 12:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86792 * 119.99767 * 2 1 4 4 H 1.48504 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47276 * 299.99769 * 3 2 1 6 6 H 1.48504 * 109.47507 * 59.99817 * 3 2 1 7 7 C 1.38799 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99265 * 180.02562 * 7 2 1 9 9 O 1.34857 * 120.00579 * 0.02562 * 7 2 1 10 10 C 1.34777 * 117.00527 * 180.02562 * 9 7 2 11 11 O 1.21555 * 119.99599 * 359.97438 * 10 9 7 12 12 C 1.47302 * 120.00325 * 180.02562 * 10 9 7 13 13 C 1.39791 * 120.21059 * 5.24150 * 12 10 9 14 14 C 1.37753 * 119.91553 * 180.02562 * 13 12 10 15 15 C 1.38597 * 120.35090 * 359.74417 * 14 13 12 16 16 C 1.38017 * 120.42660 * 0.51222 * 15 14 13 17 17 C 1.38872 * 120.07415 * 359.49441 * 16 15 14 18 18 N 1.39135 * 120.17572 * 180.27853 * 17 16 15 19 19 C 1.34774 * 119.99944 * 25.21269 * 18 17 16 20 20 O 1.21707 * 120.00190 * 5.59802 * 19 18 17 21 21 C 1.46527 * 120.00066 * 185.59626 * 19 18 17 22 22 C 1.36684 * 125.46318 * 180.02562 * 21 19 18 23 23 C 1.37455 * 113.29739 * 179.97438 * 22 21 19 24 24 C 1.33829 * 115.10085 * 0.02562 * 23 22 21 25 25 S 1.70615 * 110.96074 * 359.75728 * 24 23 22 26 26 H 0.96994 * 120.00079 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.03978 * 359.97438 * 13 12 10 28 28 H 1.08006 * 119.82849 * 179.97438 * 14 13 12 29 29 H 1.08003 * 119.79155 * 180.26073 * 15 14 13 30 30 H 1.07995 * 119.96557 * 179.76287 * 16 15 14 31 31 H 0.96999 * 120.00243 * 205.22681 * 18 17 16 32 32 H 1.08000 * 123.35268 * 359.92734 * 22 21 19 33 33 H 1.08001 * 122.45330 * 180.02562 * 23 22 21 34 34 H 1.08002 * 124.52057 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0082 -1.2021 0.0005 8 1 3.0883 -1.2019 0.0010 9 8 1.3340 -2.3700 0.0005 10 6 2.0681 -3.5004 0.0016 11 8 3.2820 -3.4367 0.0021 12 6 1.3994 -4.8128 0.0011 13 6 0.0083 -4.8935 -0.1108 14 6 -0.6108 -6.1241 -0.1101 15 6 0.1388 -7.2851 -0.0042 16 6 1.5126 -7.2219 0.1123 17 6 2.1550 -5.9907 0.1136 18 7 3.5403 -5.9248 0.2252 19 6 4.2983 -6.9676 -0.1678 20 8 3.7810 -7.9246 -0.7136 21 6 5.7454 -6.9492 0.0619 22 6 6.6168 -7.9417 -0.2898 23 6 7.9209 -7.6638 0.0443 24 6 8.1132 -6.4855 0.6491 25 16 6.6400 -5.6440 0.8286 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5804 -3.9921 -0.1969 28 1 -1.6857 -6.1848 -0.1963 29 1 -0.3556 -8.2453 -0.0088 30 1 2.0890 -8.1311 0.1982 31 1 3.9605 -5.1285 0.5859 32 1 6.3112 -8.8539 -0.7806 33 1 8.7311 -8.3463 -0.1659 34 1 9.0736 -6.1148 0.9758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042727422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:54 Heat of formation + Delta-G solvation = -61.292145 kcal Electronic energy + Delta-G solvation = -22985.581039 eV Core-core repulsion = 19361.257080 eV Total energy + Delta-G solvation = -3624.323960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08406 -40.88945 -39.47948 -38.39571 -37.40408 -35.83038 -34.36429 -32.36413 -31.76800 -30.07316 -27.74026 -26.25434 -25.00668 -24.13768 -22.40865 -21.98764 -20.38036 -19.97371 -19.57291 -18.98942 -18.37309 -17.27901 -17.05396 -16.74862 -16.64830 -16.33529 -16.24626 -15.71078 -15.32710 -15.18549 -14.67224 -14.36117 -14.13515 -13.75230 -13.72917 -13.64897 -13.35230 -13.18389 -13.00501 -12.61651 -12.44994 -12.18863 -12.02933 -11.90857 -11.76078 -11.27310 -10.95087 -10.74595 -10.04840 -10.01003 -9.66462 -9.21260 -8.59450 -6.35938 -0.68047 -0.23090 0.31032 0.40689 0.91215 1.33485 1.33948 1.35735 1.52174 1.73114 1.86260 2.01174 2.06406 2.65044 2.77534 3.00941 3.52934 3.80641 4.06681 4.10476 4.19675 4.27467 4.35014 4.39422 4.50422 4.64054 4.94336 4.95434 5.10338 5.12086 5.21050 5.25804 5.33506 5.38422 5.46251 5.75923 5.91886 6.18811 6.52422 6.78757 6.85253 7.65738 8.61038 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.004483 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.118983 B = 6244.332698 C = 8508.704982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.002 4.002 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.088 0.912 9 O -0.225 6.225 10 C 0.437 3.563 11 O -0.577 6.577 12 C -0.164 4.164 13 C -0.057 4.057 14 C -0.138 4.138 15 C -0.057 4.057 16 C -0.154 4.154 17 C 0.185 3.815 18 N -0.659 5.659 19 C 0.587 3.413 20 O -0.540 6.540 21 C -0.311 4.311 22 C -0.039 4.039 23 C -0.155 4.155 24 C -0.208 4.208 25 S 0.194 5.806 26 H 0.281 0.719 27 H 0.129 0.871 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.152 0.848 31 H 0.420 0.580 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 -14.532 2.423 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.105 0.895 9 O -0.132 6.132 10 C 0.288 3.712 11 O -0.477 6.477 12 C -0.168 4.168 13 C -0.076 4.076 14 C -0.156 4.156 15 C -0.075 4.075 16 C -0.174 4.174 17 C 0.088 3.912 18 N -0.308 5.308 19 C 0.377 3.623 20 O -0.420 6.420 21 C -0.431 4.431 22 C -0.074 4.074 23 C -0.185 4.185 24 C -0.346 4.346 25 S 0.462 5.538 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.185 0.815 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.264 0.736 32 H 0.180 0.820 33 H 0.199 0.801 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.220 -13.548 2.707 16.610 hybrid contribution 0.918 0.143 -0.517 1.063 sum 10.138 -13.405 2.190 16.949 Atomic orbital electron populations 1.70064 1.07682 1.29573 1.45844 1.26580 0.96907 1.02295 0.94502 0.84549 0.77913 0.74535 0.79257 1.18615 1.18530 1.18314 1.21586 0.92492 0.80776 1.54485 0.89472 1.83929 1.39702 1.13845 1.75761 1.21444 0.85804 0.86185 0.77772 1.90354 1.15988 1.87773 1.53611 1.19085 0.95474 0.88515 1.13752 1.21466 0.91595 1.00189 0.94347 1.21471 1.02079 0.90474 1.01612 1.21694 0.92053 1.00283 0.93503 1.21489 0.96163 0.95687 1.04052 1.17946 0.82605 0.93455 0.97208 1.43903 1.05195 1.20210 1.61476 1.17449 0.85896 0.81781 0.77132 1.90714 1.73801 1.34746 1.42741 1.24402 0.96181 1.04093 1.18400 1.21123 0.92055 0.98327 0.95922 1.20346 0.97116 0.98531 1.02516 1.25880 1.04102 0.99474 1.05172 1.83835 0.97917 1.18131 1.53921 0.90976 0.85339 0.81493 0.80816 0.83018 0.73580 0.81986 0.80064 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.01 13.67 21.63 0.30 -51.71 16 2 C 0.00 -0.09 5.49 84.89 0.47 0.37 16 3 Si 1.02 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.42 -25.16 9.65 67.95 0.66 -24.50 16 8 H 0.09 5.27 6.86 -2.91 -0.02 5.25 16 9 O -0.23 -13.42 9.00 10.85 0.10 -13.32 16 10 C 0.44 23.24 7.81 70.21 0.55 23.78 16 11 O -0.58 -31.23 13.06 19.66 0.26 -30.98 16 12 C -0.16 -7.22 5.89 -19.99 -0.12 -7.34 16 13 C -0.06 -2.14 9.61 22.53 0.22 -1.93 16 14 C -0.14 -3.78 10.02 22.24 0.22 -3.55 16 15 C -0.06 -1.45 10.03 22.30 0.22 -1.23 16 16 C -0.15 -4.99 8.69 22.37 0.19 -4.80 16 17 C 0.19 7.32 6.43 38.66 0.25 7.57 16 18 N -0.66 -25.79 4.84 -306.61 -1.48 -27.27 16 19 C 0.59 20.92 7.57 86.40 0.65 21.57 16 20 O -0.54 -20.23 14.01 -4.37 -0.06 -20.29 16 21 C -0.31 -9.02 6.45 24.07 0.16 -8.86 16 22 C -0.04 -0.89 10.01 21.72 0.22 -0.67 16 23 C -0.16 -2.53 10.15 21.08 0.21 -2.32 16 24 C -0.21 -3.49 10.92 66.82 0.73 -2.76 16 25 S 0.19 4.86 22.17 -56.49 -1.25 3.61 16 26 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.13 5.19 7.62 -2.91 -0.02 5.16 16 28 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.15 4.83 5.80 -2.91 -0.02 4.81 16 31 H 0.42 17.17 5.14 -92.71 -0.48 16.70 16 32 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -75.43 320.38 5.21 -70.22 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.70 Total: 29.74 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.63 Total: -4.65 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.19 Total: -78.99 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: 0.29 Total: -64.59 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.25 Total: 3.61 kcal Total: -75.43 5.21 -70.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042727422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.927 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds