Wall clock time and date at job start Tue Mar 31 2020 12:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99598 * 2 1 4 4 H 1.48501 * 109.46897 * 269.99675 * 3 2 1 5 5 H 1.48498 * 109.47771 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.47238 * 150.00392 * 3 2 1 7 7 C 1.37872 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47353 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.47282 * 179.97438 * 10 9 7 12 12 S 1.65595 * 119.99876 * 164.99994 * 11 10 9 13 13 O 1.42105 * 106.40149 * 178.54167 * 12 11 10 14 14 O 1.42098 * 106.40317 * 311.46040 * 12 11 10 15 15 C 1.76204 * 107.21987 * 65.00402 * 12 11 10 16 16 C 1.37835 * 119.94023 * 114.72369 * 15 12 11 17 17 C 1.39684 * 119.87316 * 179.72804 * 16 15 12 18 18 C 1.47594 * 120.12321 * 180.27014 * 17 16 15 19 19 O 1.21485 * 120.00348 * 0.27566 * 18 17 16 20 20 O 1.34733 * 120.00181 * 180.27208 * 18 17 16 21 21 C 1.39733 * 119.75509 * 0.54264 * 17 16 15 22 22 C 1.37792 * 119.87020 * 359.72895 * 21 17 16 23 23 C 1.38644 * 119.93228 * 294.99655 * 15 12 11 24 24 F 1.35103 * 119.88311 * 0.02562 * 23 15 12 25 25 H 0.96996 * 120.00100 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47289 * 59.99216 * 9 7 2 27 27 H 1.09006 * 109.46936 * 300.00470 * 9 7 2 28 28 H 1.09006 * 109.47413 * 60.00106 * 10 9 7 29 29 H 1.08993 * 109.47590 * 299.99958 * 10 9 7 30 30 H 0.96997 * 120.00091 * 344.99966 * 11 10 9 31 31 H 1.07994 * 120.06495 * 359.97438 * 16 15 12 32 32 H 0.96701 * 117.00434 * 179.97438 * 20 18 17 33 33 H 1.08001 * 120.06296 * 179.70366 * 21 17 16 34 34 H 1.08000 * 119.93667 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5129 -4.9308 0.0045 12 16 2.2985 -6.3409 -0.3653 13 8 1.3366 -7.3798 -0.2438 14 8 3.0278 -6.0927 -1.5593 15 6 3.4937 -6.6191 0.8991 16 6 3.3694 -7.7074 1.7359 17 6 4.3208 -7.9298 2.7341 18 6 4.1964 -9.0966 3.6293 19 8 3.2679 -9.8686 3.4955 20 8 5.1125 -9.3057 4.5948 21 6 5.3878 -7.0403 2.8857 22 6 5.4990 -5.9526 2.0471 23 6 4.5544 -5.7398 1.0541 24 9 4.6682 -4.6714 0.2350 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8879 27 1 0.6248 -2.5563 0.8920 28 1 2.8721 -3.6035 0.8927 29 1 2.8720 -3.6051 -0.8872 30 1 0.5678 -4.9449 0.2222 31 1 2.5402 -8.3890 1.6174 32 1 4.9886 -10.0830 5.1567 33 1 6.1237 -7.2048 3.6589 34 1 6.3230 -5.2642 2.1636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:07 Heat of formation + Delta-G solvation = -184.848369 kcal Electronic energy + Delta-G solvation = -24136.035680 eV Core-core repulsion = 20075.584696 eV Total energy + Delta-G solvation = -4060.450984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.53526 -40.81653 -38.92081 -37.13005 -36.50749 -35.78036 -35.48083 -32.78230 -32.03776 -31.48711 -29.19321 -25.12780 -24.54850 -24.09537 -21.99200 -21.23928 -19.70579 -18.71302 -18.44891 -17.65594 -17.44096 -16.81991 -16.40084 -16.22989 -16.11240 -15.96057 -15.41006 -14.72328 -14.56490 -14.31264 -14.02481 -13.94984 -13.70909 -13.31487 -13.00056 -12.57874 -12.29270 -12.03992 -11.97847 -11.95691 -11.83697 -11.30666 -11.20030 -11.12774 -10.98202 -10.65549 -10.51487 -10.06739 -9.61131 -9.41882 -9.30017 -9.01492 -8.43254 -6.09971 -4.13515 -0.07490 0.33425 0.50392 1.89928 2.49514 2.91154 3.17451 3.28111 3.34675 3.37344 3.52686 3.71016 4.06456 4.33129 4.39665 4.40939 4.50733 4.87989 5.06734 5.26890 5.29894 5.30460 5.45825 5.53469 5.68107 6.01410 6.11155 6.11600 6.40873 6.67691 7.31280 7.43146 7.52909 7.61499 7.88201 8.25633 8.92254 9.51205 11.01450 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003639 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.228547 B = 7692.429001 C = 8336.324323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.114 3.886 11 N -1.105 6.105 12 S 2.693 3.307 13 O -0.959 6.959 14 O -0.944 6.944 15 C -0.726 4.726 16 C 0.071 3.929 17 C -0.166 4.166 18 C 0.532 3.468 19 O -0.506 6.506 20 O -0.512 6.512 21 C 0.016 3.984 22 C -0.184 4.184 23 C 0.238 3.762 24 F -0.101 7.101 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.420 0.580 31 H 0.168 0.832 32 H 0.418 0.582 33 H 0.157 0.843 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.427 -16.225 8.427 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.868 5.868 12 S 2.777 3.223 13 O -0.949 6.949 14 O -0.933 6.933 15 C -0.809 4.809 16 C 0.052 3.948 17 C -0.169 4.169 18 C 0.376 3.624 19 O -0.394 6.394 20 O -0.324 6.324 21 C -0.002 4.002 22 C -0.203 4.203 23 C 0.217 3.783 24 F -0.078 7.078 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.256 0.744 31 H 0.185 0.815 32 H 0.277 0.723 33 H 0.174 0.826 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.172 -16.467 7.377 21.223 hybrid contribution 0.400 0.847 1.081 1.430 sum 11.572 -15.621 8.458 21.200 Atomic orbital electron populations 1.69959 1.06086 1.26899 1.50176 1.25001 0.94883 0.99379 0.95012 0.86527 0.79749 0.83089 0.78241 1.20514 1.21214 1.19785 1.21072 0.93219 0.90410 1.51582 0.92196 1.19302 0.94015 0.90486 0.98301 1.21894 0.96117 0.82403 1.00605 1.55494 1.21551 1.21923 1.87849 1.02133 0.73388 0.72873 0.73882 1.93581 1.59172 1.55450 1.86740 1.93628 1.73626 1.84929 1.41143 1.31355 1.18582 1.05894 1.25091 1.20938 0.95300 0.91793 0.86736 1.19106 1.00261 0.97317 1.00182 1.20551 0.79022 0.84241 0.78579 1.90945 1.32436 1.46079 1.69988 1.84521 1.51957 1.51443 1.44523 1.21593 0.94222 0.89631 0.94776 1.21309 1.01199 1.01047 0.96786 1.17464 0.92216 0.81783 0.86857 1.91738 1.95021 1.51638 1.69422 0.92804 0.95435 0.95756 0.93050 0.90733 0.74421 0.81469 0.72288 0.82567 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.43 5.11 -27.89 -0.14 0.29 16 10 C 0.11 2.22 4.49 -4.04 -0.02 2.21 16 11 N -1.10 -18.19 6.00 -10.61 -0.06 -18.25 16 12 S 2.69 42.24 5.48 -107.50 -0.59 41.65 16 13 O -0.96 -15.99 16.96 -57.17 -0.97 -16.96 16 14 O -0.94 -17.43 16.89 -57.17 -0.97 -18.39 16 15 C -0.73 -9.72 5.89 -39.58 -0.23 -9.96 16 16 C 0.07 0.87 9.09 -39.19 -0.36 0.51 16 17 C -0.17 -1.70 5.87 -104.98 -0.62 -2.32 16 18 C 0.53 5.18 8.27 34.55 0.29 5.47 16 19 O -0.51 -6.47 17.13 -19.25 -0.33 -6.80 16 20 O -0.51 -3.09 12.68 -40.58 -0.51 -3.60 16 21 C 0.02 0.13 9.61 -39.19 -0.38 -0.25 16 22 C -0.18 -1.72 10.01 -39.57 -0.40 -2.12 16 23 C 0.24 3.04 6.81 -39.26 -0.27 2.77 16 24 F -0.10 -1.48 12.89 2.25 0.03 -1.45 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16 29 H 0.07 1.49 7.24 -51.93 -0.38 1.11 16 30 H 0.42 6.30 8.65 -34.47 -0.30 6.00 16 31 H 0.17 2.01 6.91 -52.49 -0.36 1.65 16 32 H 0.42 0.71 9.11 45.56 0.42 1.12 16 33 H 0.16 0.79 7.61 -52.49 -0.40 0.39 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -35.04 318.55 -7.60 -42.64 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -2.18 Total: 1.84 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.53 Total: -16.26 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.67 Total: -43.35 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.78 Total: -45.76 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -0.59 Total: 41.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.04 -7.60 -42.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.211 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds