Wall clock time and date at job start Tue Mar 31 2020 12:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86795 * 119.99598 * 2 1 4 4 H 1.48501 * 109.46897 * 269.99675 * 3 2 1 5 5 H 1.48498 * 109.47771 * 29.99891 * 3 2 1 6 6 H 1.48501 * 109.47238 * 150.00392 * 3 2 1 7 7 C 1.37872 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47353 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.47282 * 179.97438 * 10 9 7 12 12 S 1.65595 * 119.99876 * 164.99994 * 11 10 9 13 13 O 1.42105 * 106.40149 * 178.54167 * 12 11 10 14 14 O 1.42098 * 106.40317 * 311.46040 * 12 11 10 15 15 C 1.76204 * 107.21987 * 65.00402 * 12 11 10 16 16 C 1.37835 * 119.94023 * 114.72369 * 15 12 11 17 17 C 1.39684 * 119.87316 * 179.72804 * 16 15 12 18 18 C 1.47594 * 120.12321 * 180.27014 * 17 16 15 19 19 O 1.21485 * 120.00348 * 0.27566 * 18 17 16 20 20 O 1.34733 * 120.00181 * 180.27208 * 18 17 16 21 21 C 1.39733 * 119.75509 * 0.54264 * 17 16 15 22 22 C 1.37792 * 119.87020 * 359.72895 * 21 17 16 23 23 C 1.38644 * 119.93228 * 294.99655 * 15 12 11 24 24 F 1.35103 * 119.88311 * 0.02562 * 23 15 12 25 25 H 0.96996 * 120.00100 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47289 * 59.99216 * 9 7 2 27 27 H 1.09006 * 109.46936 * 300.00470 * 9 7 2 28 28 H 1.09006 * 109.47413 * 60.00106 * 10 9 7 29 29 H 1.08993 * 109.47590 * 299.99958 * 10 9 7 30 30 H 0.96997 * 120.00091 * 344.99966 * 11 10 9 31 31 H 1.07994 * 120.06495 * 359.97438 * 16 15 12 32 32 H 0.96701 * 117.00434 * 179.97438 * 20 18 17 33 33 H 1.08001 * 120.06296 * 179.70366 * 21 17 16 34 34 H 1.08000 * 119.93667 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5129 -4.9308 0.0045 12 16 2.2985 -6.3409 -0.3653 13 8 1.3366 -7.3798 -0.2438 14 8 3.0278 -6.0927 -1.5593 15 6 3.4937 -6.6191 0.8991 16 6 3.3694 -7.7074 1.7359 17 6 4.3208 -7.9298 2.7341 18 6 4.1964 -9.0966 3.6293 19 8 3.2679 -9.8686 3.4955 20 8 5.1125 -9.3057 4.5948 21 6 5.3878 -7.0403 2.8857 22 6 5.4990 -5.9526 2.0471 23 6 4.5544 -5.7398 1.0541 24 9 4.6682 -4.6714 0.2350 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8879 27 1 0.6248 -2.5563 0.8920 28 1 2.8721 -3.6035 0.8927 29 1 2.8720 -3.6051 -0.8872 30 1 0.5678 -4.9449 0.2222 31 1 2.5402 -8.3890 1.6174 32 1 4.9886 -10.0830 5.1567 33 1 6.1237 -7.2048 3.6589 34 1 6.3230 -5.2642 2.1636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137527.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:06 Heat of formation + Delta-G solvation = -212.475599 kcal Electronic energy + Delta-G solvation = -24137.233687 eV Core-core repulsion = 20075.584696 eV Total energy + Delta-G solvation = -4061.648991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.54346 -41.56540 -39.72229 -38.48239 -37.17318 -37.14511 -37.08329 -34.75074 -32.89915 -32.32069 -31.04683 -26.45909 -25.93263 -24.98348 -23.03982 -22.77433 -20.82992 -19.81150 -19.24335 -18.85205 -18.42948 -18.24427 -17.76089 -17.46891 -17.08856 -16.78132 -16.67362 -16.42107 -15.63323 -15.51891 -15.45475 -14.98734 -14.73649 -14.42912 -14.08329 -13.85148 -13.48134 -13.40917 -13.32188 -13.24146 -13.17754 -12.98435 -12.64788 -12.47169 -12.35018 -12.11385 -11.86801 -11.49902 -11.31692 -10.90925 -10.63522 -10.40345 -10.27695 -8.19606 -6.30384 -0.96217 -0.79536 -0.44430 1.12499 1.44784 1.45998 1.56604 1.81884 1.83506 2.19585 2.43967 2.46116 2.67200 3.10649 3.15492 3.41785 3.66870 3.73148 3.89495 4.14535 4.30273 4.43270 4.48091 4.56552 4.71655 4.78375 4.82204 4.93360 5.32918 5.48416 5.49581 5.61685 5.80716 5.96472 6.21873 6.84934 6.87270 7.38943 8.92515 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003639 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.228547 B = 7692.429001 C = 8336.324323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.019 3.981 10 C 0.131 3.869 11 N -1.108 6.108 12 S 2.708 3.292 13 O -0.973 6.973 14 O -0.976 6.976 15 C -0.732 4.732 16 C 0.059 3.941 17 C -0.168 4.168 18 C 0.542 3.458 19 O -0.543 6.543 20 O -0.494 6.494 21 C 0.040 3.960 22 C -0.170 4.170 23 C 0.211 3.789 24 F -0.118 7.118 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.010 0.990 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.425 0.575 31 H 0.160 0.840 32 H 0.439 0.561 33 H 0.200 0.800 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.314 -16.379 10.511 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.020 4.020 10 C 0.006 3.994 11 N -0.870 5.870 12 S 2.797 3.203 13 O -0.964 6.964 14 O -0.966 6.966 15 C -0.820 4.820 16 C 0.039 3.961 17 C -0.171 4.171 18 C 0.387 3.613 19 O -0.435 6.435 20 O -0.309 6.309 21 C 0.023 3.977 22 C -0.189 4.189 23 C 0.190 3.810 24 F -0.096 7.096 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.028 0.972 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.261 0.739 31 H 0.178 0.822 32 H 0.302 0.698 33 H 0.217 0.783 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 14.046 -16.632 9.452 23.733 hybrid contribution -0.425 0.759 0.555 1.031 sum 13.621 -15.874 10.007 23.187 Atomic orbital electron populations 1.70090 1.07784 1.27878 1.51354 1.25933 0.95734 1.03301 0.94606 0.85439 0.78837 0.78343 0.78391 1.20126 1.20957 1.18232 1.21543 0.93930 0.91591 1.51010 0.91322 1.19181 0.94435 0.92036 0.96298 1.21524 0.94888 0.81824 1.01168 1.55351 1.22042 1.21425 1.88182 1.01272 0.73179 0.72029 0.73774 1.93557 1.60189 1.55457 1.87167 1.93583 1.74118 1.85193 1.43724 1.30742 1.18591 1.07446 1.25218 1.20930 0.96120 0.91455 0.87565 1.19267 1.00256 0.98013 0.99538 1.20399 0.78786 0.83428 0.78731 1.90946 1.34134 1.47305 1.71125 1.84460 1.50182 1.52591 1.43636 1.22063 0.93513 0.87709 0.94448 1.21723 1.00673 1.01535 0.94953 1.17837 0.93340 0.81653 0.88129 1.91690 1.95192 1.52474 1.70256 0.92730 0.98042 0.97168 0.91305 0.91362 0.73871 0.82240 0.69777 0.78319 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 0.96 5.11 29.85 0.15 1.12 16 10 C 0.13 5.21 4.49 86.37 0.39 5.59 16 11 N -1.11 -37.70 6.00 -187.49 -1.12 -38.82 16 12 S 2.71 87.52 5.48 -56.49 -0.31 87.21 16 13 O -0.97 -33.52 16.96 -128.00 -2.17 -35.69 16 14 O -0.98 -37.25 16.89 -128.00 -2.16 -39.42 16 15 C -0.73 -19.34 5.89 22.27 0.13 -19.21 16 16 C 0.06 1.38 9.09 22.52 0.20 1.59 16 17 C -0.17 -3.01 5.87 -20.10 -0.12 -3.12 16 18 C 0.54 9.11 8.27 70.29 0.58 9.69 16 19 O -0.54 -13.25 17.13 19.88 0.34 -12.91 16 20 O -0.49 -3.91 12.68 -56.43 -0.72 -4.63 16 21 C 0.04 0.48 9.61 22.53 0.22 0.70 16 22 C -0.17 -2.54 10.01 22.27 0.22 -2.32 16 23 C 0.21 5.09 6.81 22.48 0.15 5.24 16 24 F -0.12 -3.41 12.89 44.97 0.58 -2.83 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 27 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.07 2.48 6.74 -2.38 -0.02 2.47 16 29 H 0.07 2.79 7.24 -2.39 -0.02 2.77 16 30 H 0.42 13.38 8.65 -96.75 -0.84 12.54 16 31 H 0.16 3.93 6.91 -2.91 -0.02 3.90 16 32 H 0.44 -0.24 9.11 -74.06 -0.67 -0.91 16 33 H 0.20 0.71 7.61 -2.91 -0.02 0.69 16 34 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -77.29 318.55 -0.94 -78.23 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -0.32 Total: 8.05 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 2.63 Total: -29.28 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -0.84 Total: -93.45 kcal Atomic # 8 Polarization: -87.93 SS G_CDS: -4.71 Total: -92.64 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.58 Total: -2.83 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 87.52 SS G_CDS: -0.31 Total: 87.21 kcal Total: -77.29 -0.94 -78.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137527.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.242 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds