Wall clock time and date at job start Tue Mar 31 2020 12:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38610 * 119.85640 * 2 1 4 4 F 1.35103 * 119.95175 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.09543 * 180.27619 * 3 2 1 6 6 C 1.39627 * 119.82153 * 359.71423 * 5 3 2 7 7 C 1.47720 * 120.13903 * 180.02562 * 6 5 3 8 8 O 1.21477 * 120.00308 * 179.97438 * 7 6 5 9 9 O 1.34710 * 120.00268 * 359.97438 * 7 6 5 10 10 C 1.39612 * 119.72206 * 0.02562 * 6 5 3 11 11 C 1.37971 * 119.89965 * 359.97438 * 10 6 5 12 12 S 1.76206 * 119.91087 * 180.02562 * 11 10 6 13 13 O 1.42103 * 106.39795 * 358.52476 * 12 11 10 14 14 O 1.42095 * 106.40337 * 131.44335 * 12 11 10 15 15 N 1.65601 * 107.21922 * 244.98634 * 12 11 10 16 16 C 1.46498 * 120.00385 * 63.43101 * 15 12 11 17 17 C 1.50700 * 109.47184 * 163.85753 * 16 15 12 18 18 H 1.07997 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99794 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99792 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00292 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47086 * 89.99908 * 21 19 17 23 23 H 1.48496 * 109.47218 * 210.00190 * 21 19 17 24 24 H 1.48509 * 109.47080 * 330.00267 * 21 19 17 25 25 H 1.08998 * 109.47279 * 264.81568 * 1 2 3 26 26 H 1.09000 * 109.47320 * 24.82101 * 1 2 3 27 27 H 1.09006 * 109.46461 * 144.81994 * 1 2 3 28 28 H 1.08001 * 120.09051 * 179.70145 * 5 3 2 29 29 H 0.96697 * 117.00865 * 179.97438 * 9 7 6 30 30 H 1.07999 * 120.04588 * 180.02562 * 10 6 5 31 31 H 0.97004 * 119.99468 * 243.43909 * 15 12 11 32 32 H 1.09006 * 109.47278 * 283.85947 * 16 15 12 33 33 H 1.08995 * 109.47024 * 43.85639 * 16 15 12 34 34 H 0.97003 * 120.00417 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2021 0.0000 4 9 1.5176 2.3699 -0.0005 5 6 3.5786 1.2079 -0.0058 6 6 4.2780 -0.0006 -0.0055 7 6 5.7552 -0.0026 -0.0111 8 8 6.3612 -1.0554 -0.0104 9 8 6.4304 1.1631 -0.0169 10 6 3.5754 -1.2070 0.0000 11 6 2.1957 -1.1993 0.0057 12 16 1.3086 -2.7218 0.0133 13 8 2.2840 -3.7546 -0.0232 14 8 0.3313 -2.6116 1.0389 15 7 0.4780 -2.8124 -1.4164 16 6 1.2078 -2.8677 -2.6855 17 6 0.2817 -3.3374 -3.7776 18 1 -0.7477 -3.5710 -3.5492 19 6 0.7486 -3.4690 -5.0682 20 7 -0.0597 -3.8785 -6.0213 21 14 2.5289 -3.0644 -5.4632 22 1 3.3612 -4.2836 -5.3022 23 1 2.6273 -2.5791 -6.8632 24 1 3.0136 -2.0085 -4.5381 25 1 -0.3634 -0.0929 1.0234 26 1 -0.3634 0.9327 -0.4314 27 1 -0.3632 -0.8400 -0.5921 28 1 4.1161 2.1446 -0.0106 29 1 7.3959 1.1113 -0.0200 30 1 4.1111 -2.1447 0.0006 31 1 -0.4919 -2.8287 -1.4136 32 1 1.5853 -1.8750 -2.9312 33 1 2.0433 -3.5616 -2.5941 34 1 0.2686 -3.9708 -6.9294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054156433.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:31 Heat of formation + Delta-G solvation = -180.936743 kcal Electronic energy + Delta-G solvation = -24649.966850 eV Core-core repulsion = 20589.685486 eV Total energy + Delta-G solvation = -4060.281363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.23249 -40.74542 -39.06724 -37.08696 -36.42068 -35.64935 -35.02365 -33.47250 -32.29082 -31.25251 -28.24852 -27.47257 -24.01755 -23.81950 -22.17918 -21.54167 -19.62918 -18.68681 -18.19156 -17.66714 -17.03583 -16.46707 -16.32373 -16.13149 -15.95096 -15.78190 -15.77065 -15.50733 -14.58282 -13.90042 -13.86140 -13.54741 -13.50202 -13.04823 -12.86731 -12.55710 -12.45899 -12.40835 -12.19396 -12.10335 -11.85776 -11.84904 -11.71458 -11.25512 -10.97305 -10.81597 -10.67063 -10.07341 -9.78509 -9.61329 -9.12246 -9.01247 -8.62802 -6.25936 -4.28138 0.02146 0.44852 0.64567 1.98008 2.56454 2.99037 3.19452 3.25114 3.27689 3.33797 3.72019 3.89189 4.18729 4.25444 4.36601 4.48929 4.54591 4.82919 5.06065 5.07776 5.15784 5.28766 5.42371 5.46769 5.60742 5.75141 5.85036 6.02955 6.09565 6.29086 6.71455 6.79642 7.27698 7.51795 7.65910 8.28390 8.75043 9.31694 10.86196 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.005579 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.931628 B = 5017.829378 C = 5782.204015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.031 3.969 3 C 0.064 3.936 4 F -0.127 7.127 5 C -0.044 4.044 6 C -0.132 4.132 7 C 0.532 3.468 8 O -0.500 6.500 9 O -0.511 6.511 10 C 0.039 3.961 11 C -0.664 4.664 12 S 2.692 3.308 13 O -0.952 6.952 14 O -0.962 6.962 15 N -1.092 6.092 16 C 0.215 3.785 17 C -0.532 4.532 18 H 0.084 0.916 19 C 0.078 3.922 20 N -0.889 5.889 21 Si 0.869 3.131 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.264 1.264 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.418 0.582 30 H 0.167 0.833 31 H 0.418 0.582 32 H 0.020 0.980 33 H 0.034 0.966 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 12.496 12.599 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 C 0.044 3.956 4 F -0.105 7.105 5 C -0.063 4.063 6 C -0.134 4.134 7 C 0.375 3.625 8 O -0.389 6.389 9 O -0.324 6.324 10 C 0.020 3.980 11 C -0.747 4.747 12 S 2.777 3.223 13 O -0.942 6.942 14 O -0.952 6.952 15 N -0.856 5.856 16 C 0.091 3.909 17 C -0.571 4.571 18 H 0.102 0.898 19 C -0.127 4.127 20 N -0.527 5.527 21 Si 0.695 3.305 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.188 1.188 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.176 0.824 29 H 0.277 0.723 30 H 0.184 0.816 31 H 0.255 0.745 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.350 11.656 13.052 18.980 hybrid contribution 1.394 1.169 -0.790 1.983 sum 8.744 12.825 12.262 19.781 Atomic orbital electron populations 1.21389 0.88414 1.05788 1.05486 1.19883 0.97532 0.90546 0.89180 1.17299 0.89684 0.81465 1.07140 1.91534 1.79727 1.45136 1.94151 1.21623 0.92415 0.99415 0.92820 1.18822 0.89671 0.93948 1.10986 1.20530 0.88183 0.81275 0.72473 1.90952 1.69873 1.32621 1.45407 1.84519 1.27089 1.34891 1.85898 1.21165 0.91843 0.98966 0.86035 1.31228 1.05722 1.20688 1.17032 1.02121 0.73617 0.73409 0.73158 1.93591 1.62196 1.51841 1.86530 1.93582 1.59130 1.86882 1.55558 1.55292 1.18605 1.89797 1.21883 1.19523 0.93463 0.96617 0.81321 1.20993 0.98446 1.46519 0.91178 0.89757 1.24828 0.97653 0.94195 0.96001 1.69863 1.35566 1.45629 1.01599 0.86959 0.85436 0.79801 0.78308 1.19431 1.20714 1.18828 0.87392 0.89038 0.89271 0.82416 0.72291 0.81576 0.74537 0.96223 0.94816 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.46 36.01 0.30 -1.54 16 2 C 0.03 0.41 5.89 -104.46 -0.61 -0.20 16 3 C 0.06 0.78 7.23 -39.47 -0.29 0.50 16 4 F -0.13 -1.49 16.37 2.25 0.04 -1.45 16 5 C -0.04 -0.48 9.60 -39.09 -0.38 -0.86 16 6 C -0.13 -1.68 5.87 -104.99 -0.62 -2.29 16 7 C 0.53 6.33 8.27 34.60 0.29 6.61 16 8 O -0.50 -7.42 17.13 -19.25 -0.33 -7.75 16 9 O -0.51 -4.08 12.68 -40.52 -0.51 -4.59 16 10 C 0.04 0.57 9.09 -39.17 -0.36 0.21 16 11 C -0.66 -9.88 5.84 -39.66 -0.23 -10.11 16 12 S 2.69 45.06 4.93 -107.50 -0.53 44.53 16 13 O -0.95 -18.50 16.47 -57.17 -0.94 -19.44 16 14 O -0.96 -16.28 16.47 -57.17 -0.94 -17.22 16 15 N -1.09 -19.64 4.75 -11.66 -0.06 -19.70 16 16 C 0.22 4.71 5.03 -5.19 -0.03 4.68 16 17 C -0.53 -13.86 9.83 -34.44 -0.34 -14.20 16 18 H 0.08 2.31 7.90 -52.49 -0.41 1.90 16 19 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 21 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 H 0.11 1.17 8.01 -51.93 -0.42 0.76 16 26 H 0.09 0.94 7.48 -51.93 -0.39 0.55 16 27 H 0.09 1.11 5.41 -51.93 -0.28 0.83 16 28 H 0.16 1.32 7.61 -52.49 -0.40 0.92 16 29 H 0.42 1.42 9.11 45.56 0.42 1.83 16 30 H 0.17 2.45 6.91 -52.49 -0.36 2.08 16 31 H 0.42 6.80 8.19 -34.47 -0.28 6.51 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -33.22 314.91 -6.82 -40.04 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -2.04 Total: 5.34 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -2.35 Total: -15.19 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.72 Total: -44.60 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -2.73 Total: -49.01 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 45.06 SS G_CDS: -0.53 Total: 44.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.22 -6.82 -40.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156433.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.894 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds