Wall clock time and date at job start Tue Mar 31 2020 12:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38610 * 119.85640 * 2 1 4 4 F 1.35103 * 119.95175 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.09543 * 180.27619 * 3 2 1 6 6 C 1.39627 * 119.82153 * 359.71423 * 5 3 2 7 7 C 1.47720 * 120.13903 * 180.02562 * 6 5 3 8 8 O 1.21477 * 120.00308 * 179.97438 * 7 6 5 9 9 O 1.34710 * 120.00268 * 359.97438 * 7 6 5 10 10 C 1.39612 * 119.72206 * 0.02562 * 6 5 3 11 11 C 1.37971 * 119.89965 * 359.97438 * 10 6 5 12 12 S 1.76206 * 119.91087 * 180.02562 * 11 10 6 13 13 O 1.42103 * 106.39795 * 358.52476 * 12 11 10 14 14 O 1.42095 * 106.40337 * 131.44335 * 12 11 10 15 15 N 1.65601 * 107.21922 * 244.98634 * 12 11 10 16 16 C 1.46498 * 120.00385 * 63.43101 * 15 12 11 17 17 C 1.50700 * 109.47184 * 163.85753 * 16 15 12 18 18 H 1.07997 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99794 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99792 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00292 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47086 * 89.99908 * 21 19 17 23 23 H 1.48496 * 109.47218 * 210.00190 * 21 19 17 24 24 H 1.48509 * 109.47080 * 330.00267 * 21 19 17 25 25 H 1.08998 * 109.47279 * 264.81568 * 1 2 3 26 26 H 1.09000 * 109.47320 * 24.82101 * 1 2 3 27 27 H 1.09006 * 109.46461 * 144.81994 * 1 2 3 28 28 H 1.08001 * 120.09051 * 179.70145 * 5 3 2 29 29 H 0.96697 * 117.00865 * 179.97438 * 9 7 6 30 30 H 1.07999 * 120.04588 * 180.02562 * 10 6 5 31 31 H 0.97004 * 119.99468 * 243.43909 * 15 12 11 32 32 H 1.09006 * 109.47278 * 283.85947 * 16 15 12 33 33 H 1.08995 * 109.47024 * 43.85639 * 16 15 12 34 34 H 0.97003 * 120.00417 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2021 0.0000 4 9 1.5176 2.3699 -0.0005 5 6 3.5786 1.2079 -0.0058 6 6 4.2780 -0.0006 -0.0055 7 6 5.7552 -0.0026 -0.0111 8 8 6.3612 -1.0554 -0.0104 9 8 6.4304 1.1631 -0.0169 10 6 3.5754 -1.2070 0.0000 11 6 2.1957 -1.1993 0.0057 12 16 1.3086 -2.7218 0.0133 13 8 2.2840 -3.7546 -0.0232 14 8 0.3313 -2.6116 1.0389 15 7 0.4780 -2.8124 -1.4164 16 6 1.2078 -2.8677 -2.6855 17 6 0.2817 -3.3374 -3.7776 18 1 -0.7477 -3.5710 -3.5492 19 6 0.7486 -3.4690 -5.0682 20 7 -0.0597 -3.8785 -6.0213 21 14 2.5289 -3.0644 -5.4632 22 1 3.3612 -4.2836 -5.3022 23 1 2.6273 -2.5791 -6.8632 24 1 3.0136 -2.0085 -4.5381 25 1 -0.3634 -0.0929 1.0234 26 1 -0.3634 0.9327 -0.4314 27 1 -0.3632 -0.8400 -0.5921 28 1 4.1161 2.1446 -0.0106 29 1 7.3959 1.1113 -0.0200 30 1 4.1111 -2.1447 0.0006 31 1 -0.4919 -2.8287 -1.4136 32 1 1.5853 -1.8750 -2.9312 33 1 2.0433 -3.5616 -2.5941 34 1 0.2686 -3.9708 -6.9294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156433.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:30 Heat of formation + Delta-G solvation = -206.668183 kcal Electronic energy + Delta-G solvation = -24651.082649 eV Core-core repulsion = 20589.685486 eV Total energy + Delta-G solvation = -4061.397162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.15227 -41.65302 -40.02692 -38.48310 -37.23212 -37.06446 -36.67091 -34.56198 -34.17111 -32.27091 -29.47155 -29.06532 -25.00928 -24.77593 -24.04908 -22.50745 -20.86869 -19.85756 -19.34010 -19.01094 -18.16930 -17.92953 -17.45354 -17.14983 -17.07560 -17.02213 -16.67525 -16.64161 -16.19527 -15.36019 -14.97534 -14.76649 -14.55322 -14.47829 -14.41230 -13.86816 -13.72618 -13.49406 -13.37021 -13.33028 -13.21663 -12.97894 -12.78655 -12.69137 -12.49033 -12.30559 -11.89526 -11.82372 -11.63047 -10.90871 -10.79531 -10.35883 -10.09233 -8.33557 -6.39667 -0.97187 -0.74531 -0.51262 1.03835 1.35874 1.39155 1.45714 1.75660 1.87665 2.10911 2.31199 2.56850 2.74980 3.01656 3.22694 3.37309 3.42927 3.56336 3.74193 4.16657 4.21871 4.27377 4.36562 4.46133 4.53184 4.66385 4.79754 4.94205 4.99604 5.02181 5.32749 5.39014 5.42024 6.14612 6.23266 6.67067 6.81590 7.23711 8.81787 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.005579 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.931628 B = 5017.829378 C = 5782.204015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C 0.065 3.935 4 F -0.121 7.121 5 C -0.021 4.021 6 C -0.137 4.137 7 C 0.542 3.458 8 O -0.536 6.536 9 O -0.494 6.494 10 C 0.025 3.975 11 C -0.672 4.672 12 S 2.708 3.292 13 O -0.983 6.983 14 O -0.965 6.965 15 N -1.094 6.094 16 C 0.221 3.779 17 C -0.536 4.536 18 H 0.056 0.944 19 C 0.021 3.979 20 N -0.936 5.936 21 Si 0.924 3.076 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.240 1.240 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.192 0.808 29 H 0.440 0.560 30 H 0.157 0.843 31 H 0.424 0.576 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 15.155 13.382 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C 0.045 3.955 4 F -0.099 7.099 5 C -0.040 4.040 6 C -0.139 4.139 7 C 0.386 3.614 8 O -0.428 6.428 9 O -0.309 6.309 10 C 0.005 3.995 11 C -0.759 4.759 12 S 2.797 3.203 13 O -0.973 6.973 14 O -0.955 6.955 15 N -0.857 5.857 16 C 0.096 3.904 17 C -0.575 4.575 18 H 0.075 0.925 19 C -0.178 4.178 20 N -0.576 5.576 21 Si 0.746 3.254 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.163 1.163 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.209 0.791 29 H 0.303 0.697 30 H 0.174 0.826 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.070 14.314 13.857 21.890 hybrid contribution 0.825 0.448 -0.941 1.330 sum 9.896 14.762 12.916 21.969 Atomic orbital electron populations 1.21516 0.87717 1.06410 1.06158 1.20052 0.98228 0.90597 0.88906 1.17294 0.90112 0.81170 1.06947 1.91557 1.79701 1.44602 1.94067 1.21925 0.91943 1.00062 0.90081 1.18902 0.90446 0.93750 1.10839 1.20342 0.87879 0.81561 0.71605 1.90950 1.70449 1.34120 1.47259 1.84461 1.29033 1.32538 1.84840 1.21182 0.91802 0.99687 0.86795 1.30690 1.05760 1.19775 1.19661 1.01343 0.73006 0.73538 0.72380 1.93550 1.62878 1.54139 1.86735 1.93570 1.59521 1.87257 1.55192 1.55151 1.18997 1.90424 1.21108 1.19282 0.92643 0.96997 0.81500 1.21291 0.98064 1.45639 0.92516 0.92543 1.25668 1.01916 0.94259 0.95992 1.69996 1.37783 1.47622 1.02160 0.86067 0.80268 0.80297 0.78731 1.19290 1.20202 1.16294 0.86400 0.87276 0.90103 0.79057 0.69679 0.82584 0.73888 0.94595 0.95165 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.46 71.24 0.60 -2.97 16 2 C 0.02 0.60 5.89 -19.76 -0.12 0.49 16 3 C 0.06 1.37 7.23 22.34 0.16 1.53 16 4 F -0.12 -2.39 16.37 44.97 0.74 -1.65 16 5 C -0.02 -0.39 9.60 22.59 0.22 -0.18 16 6 C -0.14 -3.12 5.87 -20.10 -0.12 -3.24 16 7 C 0.54 11.43 8.27 70.33 0.58 12.01 16 8 O -0.54 -15.13 17.13 19.91 0.34 -14.79 16 9 O -0.49 -5.90 12.68 -56.20 -0.71 -6.62 16 10 C 0.02 0.69 9.09 22.54 0.20 0.90 16 11 C -0.67 -19.18 5.84 22.22 0.13 -19.05 16 12 S 2.71 90.00 4.93 -56.49 -0.28 89.72 16 13 O -0.98 -38.54 16.47 -128.00 -2.11 -40.65 16 14 O -0.97 -32.26 16.47 -128.00 -2.11 -34.36 16 15 N -1.09 -39.28 4.75 -190.79 -0.91 -40.19 16 16 C 0.22 9.57 5.03 85.63 0.43 10.01 16 17 C -0.54 -28.29 9.83 25.60 0.25 -28.04 16 18 H 0.06 3.21 7.90 -2.91 -0.02 3.18 16 19 C 0.02 1.17 5.47 84.66 0.46 1.64 16 20 N -0.94 -55.20 13.96 21.45 0.30 -54.90 16 21 Si 0.92 41.09 27.47 68.60 1.88 42.97 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 25 H 0.12 2.35 8.01 -2.39 -0.02 2.33 16 26 H 0.11 1.98 7.48 -2.39 -0.02 1.96 16 27 H 0.08 1.92 5.41 -2.38 -0.01 1.91 16 28 H 0.19 2.18 7.61 -2.91 -0.02 2.15 16 29 H 0.44 1.25 9.11 -74.06 -0.67 0.57 16 30 H 0.16 4.61 6.91 -2.91 -0.02 4.59 16 31 H 0.42 13.97 8.19 -96.74 -0.79 13.17 16 32 H 0.04 1.46 7.20 -2.38 -0.02 1.44 16 33 H 0.03 1.34 7.19 -2.39 -0.02 1.33 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -71.66 314.91 -0.37 -72.02 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.32 Total: 15.35 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.81 Total: -26.90 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -0.61 Total: -95.09 kcal Atomic # 8 Polarization: -91.84 SS G_CDS: -4.59 Total: -96.42 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.74 Total: -1.65 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.28 Total: 89.72 kcal Total: -71.66 -0.37 -72.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156433.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.646 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds