Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47150 * 2 1 4 4 C 1.37104 * 120.00145 * 262.98652 * 3 2 1 5 5 H 1.07993 * 119.99801 * 142.21247 * 4 3 2 6 6 C 1.38949 * 119.99764 * 322.21142 * 4 3 2 7 7 N 1.31404 * 119.99976 * 157.13220 * 6 4 3 8 8 Si 1.86802 * 119.99771 * 337.13131 * 6 4 3 9 9 H 1.48503 * 109.47143 * 95.20685 * 8 6 4 10 10 H 1.48510 * 109.46757 * 215.20298 * 8 6 4 11 11 H 1.48498 * 109.47312 * 335.20216 * 8 6 4 12 12 C 1.34779 * 119.99999 * 82.98490 * 3 2 1 13 13 O 1.21295 * 120.00168 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00033 * 359.97438 * 12 3 2 15 15 O 1.42903 * 109.47118 * 180.02562 * 14 12 3 16 16 C 1.35923 * 116.99778 * 179.97438 * 15 14 12 17 17 C 1.38745 * 120.03658 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.97878 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.05909 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.96605 * 180.27691 * 19 18 17 21 21 C 1.38460 * 120.07096 * 0.02562 * 19 18 17 22 22 Cl 1.73600 * 119.99116 * 180.02562 * 21 19 18 23 23 C 1.38274 * 120.01872 * 359.97438 * 21 19 18 24 24 H 1.08995 * 109.47410 * 60.00276 * 1 2 3 25 25 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46908 * 299.99710 * 1 2 3 27 27 H 1.09003 * 109.47354 * 240.00204 * 2 1 3 28 28 H 1.09001 * 109.47185 * 120.00089 * 2 1 3 29 29 H 0.97000 * 120.00179 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47015 * 60.00480 * 14 12 3 31 31 H 1.09003 * 109.47415 * 300.00222 * 14 12 3 32 32 H 1.07996 * 120.00988 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.97258 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.03253 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3835 1.9792 -1.1785 5 1 2.1619 3.0228 -1.3457 6 6 3.0388 1.2424 -2.1575 7 7 2.9960 1.6320 -3.4117 8 14 3.9805 -0.3018 -1.6906 9 1 3.1111 -1.4898 -1.8859 10 1 5.1864 -0.4245 -2.5486 11 1 4.3927 -0.2187 -0.2664 12 6 2.1085 2.0641 1.1585 13 8 2.5124 3.2078 1.1585 14 6 1.7066 1.4070 2.4537 15 8 1.8906 2.3269 3.5317 16 6 1.5717 1.8885 4.7782 17 6 1.0922 0.5993 4.9594 18 6 0.7690 0.1549 6.2268 19 6 0.9236 0.9941 7.3159 20 17 0.5235 0.4307 8.9084 21 6 1.4020 2.2811 7.1376 22 17 1.5958 3.3322 8.5056 23 6 1.7264 2.7292 5.8703 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.4531 1.1175 -4.0953 30 1 2.3235 0.5239 2.6199 31 1 0.6581 1.1133 2.4021 32 1 0.9716 -0.0566 4.1099 33 1 0.3961 -0.8489 6.3678 34 1 2.0992 3.7332 5.7309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = -63.391364 kcal Electronic energy + Delta-G solvation = -21457.254823 eV Core-core repulsion = 17828.363278 eV Total energy + Delta-G solvation = -3628.891544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58479 -40.48778 -38.88509 -37.57810 -37.25514 -36.95634 -34.40944 -32.30172 -31.41789 -31.07748 -29.65604 -26.51789 -24.50308 -24.15713 -23.39830 -20.94013 -19.70437 -18.87211 -17.91210 -17.87770 -17.51150 -17.32362 -16.99082 -16.04213 -15.82936 -15.63199 -15.03157 -14.89777 -14.81483 -14.56385 -14.32613 -13.99094 -13.81022 -13.53909 -13.05715 -12.93088 -12.82753 -12.70427 -12.59176 -12.44591 -12.08694 -11.95795 -11.87694 -11.75921 -11.50494 -11.07717 -10.46705 -10.08047 -9.78798 -9.30362 -8.53897 -6.17603 -0.14292 0.02523 0.74495 1.09393 1.19300 1.32945 1.45667 1.80096 1.81005 2.16941 2.34233 2.79283 2.96486 3.50446 3.66761 3.76207 3.92587 3.99746 4.05816 4.13215 4.17064 4.42406 4.52700 4.56124 4.65455 4.93356 4.95894 5.00502 5.06721 5.23688 5.40777 5.51187 6.00624 6.14396 6.52630 6.89283 7.22053 7.76768 8.63154 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026919 B = 0.002943 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.913511 B = 9513.145922 C =10018.031385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 N -0.467 5.467 4 C -0.338 4.338 5 H 0.041 0.959 6 C 0.015 3.985 7 N -0.907 5.907 8 Si 0.946 3.054 9 H -0.231 1.231 10 H -0.291 1.291 11 H -0.255 1.255 12 C 0.452 3.548 13 O -0.607 6.607 14 C 0.053 3.947 15 O -0.312 6.312 16 C 0.136 3.864 17 C -0.187 4.187 18 C -0.045 4.045 19 C -0.080 4.080 20 Cl -0.049 7.049 21 C 0.002 3.998 22 Cl -0.044 7.044 23 C -0.149 4.149 24 H 0.036 0.964 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.282 0.718 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 -11.741 21.950 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.053 4.053 3 N -0.190 5.190 4 C -0.465 4.465 5 H 0.059 0.941 6 C -0.188 4.188 7 N -0.544 5.544 8 Si 0.768 3.232 9 H -0.155 1.155 10 H -0.218 1.218 11 H -0.178 1.178 12 C 0.242 3.758 13 O -0.491 6.491 14 C -0.024 4.024 15 O -0.225 6.225 16 C 0.090 3.910 17 C -0.206 4.206 18 C -0.063 4.063 19 C -0.107 4.107 20 Cl -0.020 7.020 21 C -0.026 4.026 22 Cl -0.015 7.015 23 C -0.169 4.169 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.192 0.808 33 H 0.196 0.804 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.332 -10.963 21.932 25.324 hybrid contribution 0.618 0.328 -0.429 0.821 sum -5.714 -10.636 21.503 24.661 Atomic orbital electron populations 1.22139 0.93621 1.03865 1.02118 1.22270 0.97007 0.82465 1.03555 1.43803 1.57273 1.13475 1.04405 1.18590 1.39478 0.96790 0.91682 0.94114 1.26187 0.96132 1.02544 0.93927 1.69872 1.40755 1.42598 1.01162 0.85878 0.78673 0.79118 0.79500 1.15491 1.21761 1.17836 1.20793 0.81889 0.87641 0.85514 1.90583 1.50685 1.20774 1.87067 1.22795 1.04779 0.92019 0.82854 1.86194 1.81239 1.41713 1.13323 1.19152 0.94271 0.93451 0.84141 1.21695 1.04109 0.94846 0.99925 1.21158 0.95782 1.00459 0.88948 1.20780 1.07693 0.93495 0.88766 1.98379 1.92356 1.88761 1.22517 1.20403 1.02086 0.91138 0.88924 1.98391 1.95768 1.65477 1.41870 1.20227 1.06205 1.01770 0.88682 0.94426 0.87966 0.91368 0.91466 0.87380 0.90876 0.86002 0.85921 0.80763 0.80365 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.11 71.98 0.73 -3.36 16 2 C 0.07 2.20 4.46 86.38 0.39 2.58 16 3 N -0.47 -21.14 2.18 -635.54 -1.39 -22.52 16 4 C -0.34 -19.33 9.35 84.04 0.79 -18.55 16 5 H 0.04 2.79 7.92 -2.91 -0.02 2.76 16 6 C 0.01 0.81 5.24 84.93 0.45 1.26 16 7 N -0.91 -52.69 13.96 21.66 0.30 -52.39 16 8 Si 0.95 39.16 25.11 68.60 1.72 40.88 16 9 H -0.23 -7.98 6.67 99.48 0.66 -7.32 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 12 C 0.45 20.26 7.65 87.66 0.67 20.93 16 13 O -0.61 -34.63 16.37 15.96 0.26 -34.37 16 14 C 0.05 1.53 3.83 71.23 0.27 1.80 16 15 O -0.31 -10.16 9.67 -73.65 -0.71 -10.88 16 16 C 0.14 3.36 6.69 22.50 0.15 3.51 16 17 C -0.19 -3.12 9.04 22.37 0.20 -2.92 16 18 C -0.05 -0.65 9.82 22.27 0.22 -0.43 16 19 C -0.08 -1.47 6.32 22.35 0.14 -1.33 16 20 Cl -0.05 -0.83 27.95 -2.72 -0.08 -0.90 16 21 C 0.00 0.05 6.32 22.33 0.14 0.19 16 22 Cl -0.04 -0.91 27.95 -2.72 -0.08 -0.99 16 23 C -0.15 -3.65 9.77 22.39 0.22 -3.43 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.49 6.38 -2.39 -0.02 1.48 16 27 H 0.07 2.34 3.72 -2.39 -0.01 2.33 16 28 H 0.11 2.39 6.74 -2.39 -0.02 2.38 16 29 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.12 2.58 6.94 -2.39 -0.02 2.56 16 31 H 0.12 2.59 5.87 -2.39 -0.01 2.58 16 32 H 0.18 1.82 6.30 -2.91 -0.02 1.80 16 33 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -76.76 317.25 5.50 -71.25 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.11 Total: 9.64 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.36 Total: 0.27 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.09 Total: -74.91 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.45 Total: -45.24 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.72 Total: 40.88 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.15 Total: -1.89 kcal Total: -76.76 5.50 -71.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.861 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds