Wall clock time and date at job start Tue Mar 31 2020 11:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47289 * 2 1 4 4 C 1.37095 * 120.00036 * 264.74591 * 3 2 1 5 5 H 1.08006 * 119.99879 * 146.16862 * 4 3 2 6 6 C 1.38949 * 120.00195 * 326.16747 * 4 3 2 7 7 N 1.31418 * 119.99850 * 337.68103 * 6 4 3 8 8 Si 1.86799 * 120.00029 * 157.67975 * 6 4 3 9 9 H 1.48499 * 109.47342 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47134 * 120.00405 * 8 6 4 11 11 H 1.48502 * 109.46909 * 240.00032 * 8 6 4 12 12 C 1.34783 * 120.00158 * 84.74628 * 3 2 1 13 13 O 1.21286 * 119.99879 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99643 * 0.02562 * 12 3 2 15 15 O 1.42895 * 109.46935 * 180.02562 * 14 12 3 16 16 C 1.35923 * 117.00268 * 179.97438 * 15 14 12 17 17 C 1.38696 * 120.05100 * 0.02562 * 16 15 14 18 18 C 1.38259 * 119.94487 * 179.97438 * 17 16 15 19 19 Cl 1.73601 * 119.97258 * 179.97438 * 18 17 16 20 20 C 1.38391 * 120.05210 * 359.97438 * 18 17 16 21 21 C 1.38235 * 120.10683 * 359.97438 * 20 18 17 22 22 C 1.38259 * 120.05374 * 0.02562 * 21 20 18 23 23 Cl 1.73600 * 120.02642 * 180.27272 * 22 21 20 24 24 H 1.08996 * 109.47213 * 300.00535 * 1 2 3 25 25 H 1.09004 * 109.46916 * 60.00190 * 1 2 3 26 26 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47168 * 239.99980 * 2 1 3 28 28 H 1.09004 * 109.46916 * 119.99810 * 2 1 3 29 29 H 0.97002 * 119.99925 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47597 * 59.99533 * 14 12 3 31 31 H 1.09003 * 109.46677 * 299.99410 * 14 12 3 32 32 H 1.08000 * 120.02413 * 359.95854 * 17 16 15 33 33 H 1.08004 * 119.94800 * 180.02562 * 20 18 17 34 34 H 1.07997 * 119.97464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9007 1.2466 -2.2178 7 7 3.5052 0.1087 -1.9593 8 14 2.7825 1.8630 -3.9772 9 1 2.0592 3.1597 -4.0000 10 1 4.1485 2.0489 -4.5294 11 1 2.0465 0.8705 -4.8010 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1622 14 6 1.7789 1.3814 2.4620 15 8 1.9940 2.2903 3.5435 16 6 1.7123 1.8389 4.7942 17 6 1.2392 0.5479 4.9766 18 6 0.9538 0.0909 6.2498 19 17 0.3610 -1.5246 6.4788 20 6 1.1404 0.9202 7.3419 21 6 1.6128 2.2069 7.1627 22 6 1.8996 2.6685 5.8914 23 17 2.4996 4.2821 5.6679 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8898 -0.4113 -2.6823 30 1 2.4008 0.4971 2.6008 31 1 0.7295 1.0875 2.4381 32 1 1.0936 -0.0996 4.1246 33 1 0.9173 0.5613 8.3358 34 1 1.7580 2.8522 8.0165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:23 Heat of formation + Delta-G solvation = -67.805864 kcal Electronic energy + Delta-G solvation = -21669.367385 eV Core-core repulsion = 18040.284413 eV Total energy + Delta-G solvation = -3629.082972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55990 -40.33944 -38.69363 -37.71968 -37.12219 -36.90039 -34.10916 -31.84895 -31.47472 -31.21884 -29.52153 -26.65305 -24.21843 -23.79411 -23.54436 -20.98901 -19.75540 -18.76942 -17.81557 -17.62022 -17.46143 -17.21996 -16.69333 -16.17959 -15.91067 -15.54337 -15.14035 -14.86555 -14.63384 -14.42716 -13.90614 -13.64482 -13.57079 -13.40255 -13.31899 -12.91562 -12.75317 -12.62220 -12.53249 -12.23353 -12.07397 -12.02654 -11.87050 -11.86662 -11.70108 -10.94863 -10.44850 -9.98428 -9.54418 -9.33047 -8.39389 -6.09051 -0.19383 0.10438 0.91194 1.16120 1.34571 1.41842 1.54409 1.75570 1.89557 2.32962 2.33939 2.96025 3.07221 3.57978 3.63464 3.87238 3.92697 3.99067 4.06195 4.19284 4.34160 4.47424 4.59416 4.68318 4.80442 4.96003 4.99929 5.02618 5.30077 5.37099 5.43496 5.54662 6.00009 6.18218 6.48361 7.11729 7.36136 7.95359 8.63145 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.003719 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.789054 B = 7526.372810 C = 8947.105687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.087 3.913 3 N -0.442 5.442 4 C -0.343 4.343 5 H 0.064 0.936 6 C 0.008 3.992 7 N -0.883 5.883 8 Si 0.982 3.018 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.260 1.260 12 C 0.439 3.561 13 O -0.616 6.616 14 C 0.060 3.940 15 O -0.301 6.301 16 C 0.131 3.869 17 C -0.198 4.198 18 C 0.006 3.994 19 Cl -0.049 7.049 20 C -0.129 4.129 21 C -0.050 4.050 22 C -0.086 4.086 23 Cl -0.063 7.063 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.276 0.724 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 -6.099 17.677 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.036 4.036 3 N -0.162 5.162 4 C -0.471 4.471 5 H 0.082 0.918 6 C -0.195 4.195 7 N -0.521 5.521 8 Si 0.805 3.195 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.185 1.185 12 C 0.228 3.772 13 O -0.502 6.502 14 C -0.018 4.018 15 O -0.213 6.213 16 C 0.084 3.916 17 C -0.218 4.218 18 C -0.021 4.021 19 Cl -0.020 7.020 20 C -0.147 4.147 21 C -0.068 4.068 22 C -0.114 4.114 23 Cl -0.034 7.034 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.243 -5.535 17.478 19.713 hybrid contribution 0.263 0.249 -1.236 1.288 sum -6.980 -5.286 16.242 18.452 Atomic orbital electron populations 1.22135 0.94965 1.02874 1.01464 1.21855 0.94375 0.82965 1.04432 1.43725 1.55385 1.13245 1.03816 1.19436 1.42362 0.95036 0.90249 0.91806 1.26050 0.93186 0.96501 1.03745 1.69975 1.31954 1.15757 1.34369 0.85066 0.78204 0.78752 0.77448 1.19740 1.20445 1.18458 1.20644 0.82903 0.88023 0.85644 1.90531 1.51642 1.20699 1.87293 1.22626 1.03477 0.91979 0.83717 1.86274 1.81500 1.41074 1.12464 1.18950 0.95631 0.92510 0.84536 1.21212 1.06798 0.94872 0.98900 1.20829 0.99404 0.87853 0.93983 1.98395 1.86228 1.20167 1.97182 1.21267 1.01575 0.92337 0.99569 1.21197 0.95245 0.96020 0.94355 1.20636 1.08968 0.88115 0.93632 1.98388 1.86548 1.20875 1.97631 0.92773 0.93812 0.89165 0.88639 0.91152 0.91383 0.87952 0.87329 0.82702 0.80607 0.80414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.15 71.98 0.73 -4.25 16 2 C 0.09 3.48 5.43 86.38 0.47 3.95 16 3 N -0.44 -22.26 2.56 -635.54 -1.63 -23.88 16 4 C -0.34 -19.32 8.98 84.04 0.75 -18.57 16 5 H 0.06 3.91 7.70 -2.91 -0.02 3.88 16 6 C 0.01 0.43 4.92 84.93 0.42 0.85 16 7 N -0.88 -46.04 11.33 21.66 0.25 -45.80 16 8 Si 0.98 41.50 29.61 68.60 2.03 43.53 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 12 C 0.44 22.16 7.67 87.66 0.67 22.83 16 13 O -0.62 -37.31 16.32 15.99 0.26 -37.05 16 14 C 0.06 2.20 3.83 71.24 0.27 2.48 16 15 O -0.30 -11.66 9.13 -73.65 -0.67 -12.33 16 16 C 0.13 3.93 6.68 22.52 0.15 4.08 16 17 C -0.20 -4.75 8.82 22.38 0.20 -4.56 16 18 C 0.01 0.12 6.32 22.31 0.14 0.26 16 19 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 20 C -0.13 -2.01 9.83 22.31 0.22 -1.79 16 21 C -0.05 -0.89 9.82 22.27 0.22 -0.67 16 22 C -0.09 -2.29 6.33 22.41 0.14 -2.15 16 23 Cl -0.06 -1.88 28.50 -2.72 -0.08 -1.96 16 24 H 0.05 1.57 6.60 -2.39 -0.02 1.56 16 25 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 4.32 5.34 -2.39 -0.01 4.31 16 28 H 0.07 2.44 6.66 -2.38 -0.02 2.42 16 29 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.10 3.30 6.93 -2.39 -0.02 3.28 16 31 H 0.11 3.29 6.06 -2.39 -0.01 3.27 16 32 H 0.16 3.37 6.30 -2.91 -0.02 3.35 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -71.02 322.79 5.62 -65.41 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.15 Total: 10.51 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.39 Total: 2.49 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.38 Total: -69.68 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.41 Total: -49.37 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.16 Total: -2.87 kcal Total: -71.02 5.62 -65.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.400 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds