Wall clock time and date at job start Tue Mar 31 2020 11:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00205 * 2 1 4 4 C 1.52992 * 109.47488 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46840 * 65.13436 * 4 3 2 6 6 C 1.46904 * 111.00109 * 194.52685 * 5 4 3 7 7 C 1.50700 * 109.47325 * 75.84202 * 6 5 4 8 8 H 1.08001 * 119.99957 * 4.49108 * 7 6 5 9 9 C 1.37877 * 119.99771 * 184.48591 * 7 6 5 10 10 N 1.31517 * 119.99944 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00116 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.47056 * 90.00115 * 11 9 7 13 13 H 1.48499 * 109.47347 * 209.99612 * 11 9 7 14 14 H 1.48495 * 109.47347 * 330.00164 * 11 9 7 15 15 C 1.46900 * 111.00066 * 70.57024 * 5 4 3 16 16 C 1.50694 * 109.46893 * 190.00120 * 15 5 4 17 17 C 1.34502 * 125.78437 * 90.00500 * 16 15 5 18 18 C 1.41389 * 106.85277 * 179.97438 * 17 16 15 19 19 C 1.34620 * 106.83305 * 359.97438 * 18 17 16 20 20 Br 1.89104 * 125.79883 * 180.02562 * 19 18 17 21 21 O 1.34311 * 108.40212 * 359.74096 * 19 18 17 22 22 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47429 * 299.99889 * 1 2 3 24 24 H 1.08998 * 109.47195 * 59.99932 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99614 * 3 2 1 26 26 H 1.08993 * 109.46749 * 300.00390 * 3 2 1 27 27 H 1.09007 * 109.47431 * 305.14323 * 4 3 2 28 28 H 1.09000 * 109.47751 * 185.13466 * 4 3 2 29 29 H 1.09000 * 109.47192 * 195.84732 * 6 5 4 30 30 H 1.09003 * 109.46458 * 315.84581 * 6 5 4 31 31 H 0.96995 * 120.00082 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46735 * 309.99881 * 15 5 4 33 33 H 1.08998 * 109.46882 * 69.99809 * 15 5 4 34 34 H 1.08002 * 126.57275 * 359.96759 * 17 16 15 35 35 H 1.08003 * 126.58565 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9780 0.5653 -1.2557 6 6 5.3743 0.1189 -1.1593 7 6 5.4421 -1.1460 -0.3429 8 1 4.5328 -1.6152 0.0024 9 6 6.6652 -1.7042 -0.0370 10 7 6.7244 -2.8084 0.6750 11 14 8.2380 -0.8923 -0.6338 12 1 8.7080 0.0831 0.3826 13 1 9.2807 -1.9284 -0.8448 14 1 7.9758 -0.1861 -1.9135 15 6 3.7957 1.4831 -2.3881 16 6 4.0245 0.7399 -3.6789 17 6 3.0845 0.0937 -4.3916 18 6 3.7328 -0.4568 -5.5211 19 6 5.0313 -0.1131 -5.4313 20 35 6.3853 -0.5725 -6.6689 21 8 5.2006 0.6167 -4.3165 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8465 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8506 0.5665 0.8413 28 1 3.9785 2.1764 0.0926 29 1 5.7644 -0.0724 -2.1590 30 1 5.9711 0.8941 -0.6786 31 1 7.5848 -3.2009 0.8906 32 1 2.7812 1.8816 -2.3731 33 1 4.5094 2.3032 -2.3095 34 1 2.0357 0.0110 -4.1477 35 1 3.2742 -1.0402 -6.3058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070845869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:15 Heat of formation + Delta-G solvation = -7.814214 kcal Electronic energy + Delta-G solvation = -19223.164854 eV Core-core repulsion = 16077.379559 eV Total energy + Delta-G solvation = -3145.785294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.36786 -37.99873 -36.38520 -32.98696 -32.53511 -31.94790 -30.21611 -29.32805 -27.02576 -25.85874 -24.37381 -22.07830 -21.64339 -20.61443 -19.73159 -17.11414 -16.73818 -16.14195 -16.01333 -15.79859 -14.90930 -14.54216 -14.48235 -13.73872 -13.70845 -12.98250 -12.68114 -12.61499 -12.45895 -12.25297 -12.00193 -11.70932 -11.35290 -11.21689 -11.13356 -10.73557 -10.60611 -10.52506 -10.09138 -9.85672 -9.64821 -9.34887 -9.20612 -8.50728 -8.16773 -7.47586 -5.98217 -3.94550 1.05888 1.74975 2.75366 3.31122 3.39839 3.44838 3.54005 4.16638 4.47852 4.69758 4.98877 5.14801 5.31639 5.33569 5.43646 5.49000 5.53586 5.61783 5.66883 5.74729 5.80251 5.86241 5.97528 6.03279 6.07340 6.50689 6.62252 6.79513 6.88467 7.22672 7.53481 7.66168 7.80184 7.95306 8.70572 9.16738 9.63877 11.14984 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.005816 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.891582 B = 4812.954102 C = 6750.913068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.068 3.932 4 C 0.061 3.939 5 N -0.511 5.511 6 C 0.160 3.840 7 C -0.502 4.502 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.865 3.135 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.124 3.876 16 C 0.043 3.957 17 C -0.197 4.197 18 C -0.152 4.152 19 C -0.037 4.037 20 Br 0.035 6.965 21 O -0.158 6.158 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.154 0.846 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 9.560 -12.250 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.010 4.010 4 C -0.067 4.067 5 N -0.236 5.236 6 C 0.034 3.966 7 C -0.540 4.540 8 H 0.104 0.896 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.693 3.307 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.190 1.190 15 C -0.004 4.004 16 C -0.010 4.010 17 C -0.218 4.218 18 C -0.174 4.174 19 C -0.166 4.166 20 Br 0.119 6.881 21 O -0.055 6.055 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.172 0.828 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.144 8.803 -12.606 16.955 hybrid contribution 0.898 1.185 0.041 1.488 sum -6.246 9.989 -12.565 17.224 Atomic orbital electron populations 1.22686 0.82707 1.02340 0.98909 1.88169 1.17879 1.26912 1.94996 1.22614 0.94565 0.85083 0.98694 1.22092 0.92150 0.97883 0.94573 1.62000 1.25358 1.35523 1.00719 1.20304 0.82754 0.95943 0.97620 1.21023 0.94651 1.06770 1.31596 0.89604 1.24865 0.98527 0.94881 0.94887 1.69891 1.25173 1.19895 1.38872 0.87003 0.84196 0.79594 0.79946 1.20360 1.21071 1.19043 1.20685 1.01439 0.92555 0.85769 1.22481 0.81923 1.01346 0.95205 1.21460 1.01088 1.03300 0.95916 1.21631 0.91414 1.03471 1.00852 1.23625 0.94615 1.06133 0.92196 1.96757 1.51049 1.90934 1.49383 1.84111 1.34441 1.56779 1.30124 0.89987 0.94914 0.94826 0.93731 0.94159 0.87927 0.94189 0.95094 0.99527 0.92772 0.88357 0.93957 0.82804 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.27 10.65 -35.23 -0.38 -6.65 16 3 C 0.07 0.99 6.08 37.15 0.23 1.22 16 4 C 0.06 1.08 5.17 -3.82 -0.02 1.06 16 5 N -0.51 -10.50 4.33 -237.51 -1.03 -11.53 16 6 C 0.16 3.94 3.67 -4.97 -0.02 3.92 16 7 C -0.50 -14.61 9.09 -34.44 -0.31 -14.93 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 11 Si 0.87 22.21 27.38 -169.99 -4.65 17.56 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 14 H -0.27 -6.73 6.67 56.52 0.38 -6.35 16 15 C 0.12 2.06 5.35 -4.98 -0.03 2.03 16 16 C 0.04 0.77 5.93 -35.63 -0.21 0.56 16 17 C -0.20 -3.15 10.81 -39.70 -0.43 -3.58 16 18 C -0.15 -2.32 10.86 -39.66 -0.43 -2.76 16 19 C -0.04 -0.64 7.80 29.45 0.23 -0.41 16 20 Br 0.04 0.50 34.09 -68.01 -2.32 -1.82 16 21 O -0.16 -3.07 9.62 5.55 0.05 -3.01 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.04 0.51 6.37 -51.93 -0.33 0.18 16 27 H 0.10 2.13 7.37 -51.93 -0.38 1.75 16 28 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.03 0.81 5.44 -51.93 -0.28 0.53 16 30 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.10 1.32 6.25 -51.93 -0.32 1.00 16 33 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 34 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -33.17 316.00 -7.42 -40.59 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.65 Total: -3.12 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.02 Total: -9.40 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.26 Total: -38.91 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.32 Total: -9.66 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.65 Total: 17.56 kcal Atomic # 35 Polarization: 0.50 SS G_CDS: -2.32 Total: -1.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.17 -7.42 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.776 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds