Wall clock time and date at job start Tue Mar 31 2020 11:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00205 * 2 1 4 4 C 1.52992 * 109.47488 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46840 * 65.13436 * 4 3 2 6 6 C 1.46904 * 111.00109 * 194.52685 * 5 4 3 7 7 C 1.50700 * 109.47325 * 75.84202 * 6 5 4 8 8 H 1.08001 * 119.99957 * 4.49108 * 7 6 5 9 9 C 1.37877 * 119.99771 * 184.48591 * 7 6 5 10 10 N 1.31517 * 119.99944 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00116 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.47056 * 90.00115 * 11 9 7 13 13 H 1.48499 * 109.47347 * 209.99612 * 11 9 7 14 14 H 1.48495 * 109.47347 * 330.00164 * 11 9 7 15 15 C 1.46900 * 111.00066 * 70.57024 * 5 4 3 16 16 C 1.50694 * 109.46893 * 190.00120 * 15 5 4 17 17 C 1.34502 * 125.78437 * 90.00500 * 16 15 5 18 18 C 1.41389 * 106.85277 * 179.97438 * 17 16 15 19 19 C 1.34620 * 106.83305 * 359.97438 * 18 17 16 20 20 Br 1.89104 * 125.79883 * 180.02562 * 19 18 17 21 21 O 1.34311 * 108.40212 * 359.74096 * 19 18 17 22 22 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47429 * 299.99889 * 1 2 3 24 24 H 1.08998 * 109.47195 * 59.99932 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99614 * 3 2 1 26 26 H 1.08993 * 109.46749 * 300.00390 * 3 2 1 27 27 H 1.09007 * 109.47431 * 305.14323 * 4 3 2 28 28 H 1.09000 * 109.47751 * 185.13466 * 4 3 2 29 29 H 1.09000 * 109.47192 * 195.84732 * 6 5 4 30 30 H 1.09003 * 109.46458 * 315.84581 * 6 5 4 31 31 H 0.96995 * 120.00082 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46735 * 309.99881 * 15 5 4 33 33 H 1.08998 * 109.46882 * 69.99809 * 15 5 4 34 34 H 1.08002 * 126.57275 * 359.96759 * 17 16 15 35 35 H 1.08003 * 126.58565 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9780 0.5653 -1.2557 6 6 5.3743 0.1189 -1.1593 7 6 5.4421 -1.1460 -0.3429 8 1 4.5328 -1.6152 0.0024 9 6 6.6652 -1.7042 -0.0370 10 7 6.7244 -2.8084 0.6750 11 14 8.2380 -0.8923 -0.6338 12 1 8.7080 0.0831 0.3826 13 1 9.2807 -1.9284 -0.8448 14 1 7.9758 -0.1861 -1.9135 15 6 3.7957 1.4831 -2.3881 16 6 4.0245 0.7399 -3.6789 17 6 3.0845 0.0937 -4.3916 18 6 3.7328 -0.4568 -5.5211 19 6 5.0313 -0.1131 -5.4313 20 35 6.3853 -0.5725 -6.6689 21 8 5.2006 0.6167 -4.3165 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8465 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8506 0.5665 0.8413 28 1 3.9785 2.1764 0.0926 29 1 5.7644 -0.0724 -2.1590 30 1 5.9711 0.8941 -0.6786 31 1 7.5848 -3.2009 0.8906 32 1 2.7812 1.8816 -2.3731 33 1 4.5094 2.3032 -2.3095 34 1 2.0357 0.0110 -4.1477 35 1 3.2742 -1.0402 -6.3058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070845869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:12 Heat of formation + Delta-G solvation = -31.477601 kcal Electronic energy + Delta-G solvation = -19224.190975 eV Core-core repulsion = 16077.379559 eV Total energy + Delta-G solvation = -3146.811416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.63806 -39.32587 -37.76892 -34.75172 -34.20277 -33.20526 -31.46293 -31.03370 -28.57077 -26.94584 -25.84486 -23.77990 -22.91606 -22.03943 -21.14139 -19.04380 -18.23404 -17.54713 -17.19056 -17.13258 -16.37904 -16.09136 -15.86313 -15.32905 -15.07683 -14.50296 -14.34163 -13.97185 -13.84310 -13.62310 -13.44676 -13.17551 -12.73541 -12.62015 -12.47127 -12.32370 -12.21239 -11.88538 -11.69326 -11.55312 -11.47604 -10.89540 -10.78102 -10.39083 -9.43425 -9.02562 -8.28092 -6.29298 -0.13672 0.47374 1.27244 1.31370 1.41919 1.53177 2.29899 2.31482 3.04875 3.08090 3.24018 3.75481 3.99350 4.18818 4.25637 4.32642 4.38866 4.55963 4.57087 4.64332 4.66124 4.70540 4.82680 4.85288 4.89247 4.94355 4.97705 5.15363 5.45264 5.56626 5.89994 6.00844 6.28644 6.54829 6.61822 6.78962 7.33134 8.89052 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.005816 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.891582 B = 4812.954102 C = 6750.913068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.530 5.530 6 C 0.174 3.826 7 C -0.504 4.504 8 H 0.038 0.962 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.934 3.066 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.260 1.260 15 C 0.126 3.874 16 C 0.013 3.987 17 C -0.193 4.193 18 C -0.147 4.147 19 C -0.063 4.063 20 Br 0.053 6.947 21 O -0.186 6.186 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.019 0.981 30 H -0.010 1.010 31 H 0.266 0.734 32 H 0.135 0.865 33 H 0.052 0.948 34 H 0.177 0.823 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 11.477 -13.580 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.004 4.004 4 C -0.069 4.069 5 N -0.255 5.255 6 C 0.047 3.953 7 C -0.542 4.542 8 H 0.056 0.944 9 C -0.186 4.186 10 N -0.587 5.587 11 Si 0.758 3.242 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.184 1.184 15 C -0.001 4.001 16 C -0.039 4.039 17 C -0.213 4.213 18 C -0.169 4.169 19 C -0.190 4.190 20 Br 0.137 6.863 21 O -0.084 6.084 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.194 0.806 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.908 10.743 -13.936 19.292 hybrid contribution 1.007 0.537 0.437 1.222 sum -6.901 11.280 -13.499 18.897 Atomic orbital electron populations 1.22856 0.80369 1.02978 1.00757 1.88106 1.20634 1.28706 1.95424 1.22642 0.91880 0.84655 1.01230 1.22136 0.94941 0.97909 0.91922 1.61824 1.22374 1.38223 1.03074 1.19933 0.85788 0.93919 0.95637 1.21209 0.92951 1.08358 1.31728 0.94402 1.25740 1.02329 0.95458 0.95075 1.70045 1.26283 1.21741 1.40642 0.85900 0.79519 0.78884 0.79858 1.18603 1.20554 1.18374 1.20838 1.03791 0.91741 0.83710 1.22861 0.82126 1.02837 0.96079 1.21845 1.01948 1.02002 0.95540 1.22058 0.90864 1.02793 1.01185 1.24179 0.96103 1.06460 0.92273 1.96751 1.50508 1.90739 1.48330 1.84067 1.35485 1.57696 1.31139 0.90136 0.93131 0.92752 0.91147 0.91346 0.92266 0.91533 0.96263 0.99220 0.92539 0.84702 0.93020 0.80568 0.79859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.83 10.65 -148.98 -1.59 -15.42 16 3 C 0.07 1.96 6.08 71.98 0.44 2.40 16 4 C 0.06 2.03 5.17 86.30 0.45 2.48 16 5 N -0.53 -21.44 4.33 -905.35 -3.92 -25.36 16 6 C 0.17 8.65 3.67 85.56 0.31 8.96 16 7 C -0.50 -30.39 9.09 25.60 0.23 -30.16 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 9 C 0.01 0.67 5.47 84.65 0.46 1.14 16 10 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 11 Si 0.93 46.33 27.38 68.60 1.88 48.21 16 12 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.26 -12.52 6.67 99.48 0.66 -11.86 16 15 C 0.13 3.94 5.35 85.55 0.46 4.39 16 16 C 0.01 0.45 5.93 24.83 0.15 0.59 16 17 C -0.19 -5.74 10.81 22.19 0.24 -5.51 16 18 C -0.15 -4.21 10.86 22.22 0.24 -3.97 16 19 C -0.06 -2.06 7.80 66.99 0.52 -1.53 16 20 Br 0.05 1.44 34.09 -20.37 -0.69 0.75 16 21 O -0.19 -7.06 9.62 -3.04 -0.03 -7.09 16 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 1.45 6.37 -2.39 -0.02 1.44 16 27 H 0.06 2.55 7.37 -2.38 -0.02 2.53 16 28 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.02 1.01 5.44 -2.39 -0.01 1.00 16 30 H -0.01 -0.48 7.18 -2.39 -0.02 -0.49 16 31 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 32 H 0.14 3.12 6.25 -2.38 -0.01 3.11 16 33 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 34 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -74.88 316.00 1.74 -73.14 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.04 Total: 5.98 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.75 Total: -19.35 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.62 Total: -86.21 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.62 Total: -22.51 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.21 kcal Atomic # 35 Polarization: 1.44 SS G_CDS: -0.69 Total: 0.75 kcal Total: -74.88 1.74 -73.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.659 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds