Wall clock time and date at job start Tue Mar 31 2020 11:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99478 * 2 1 4 4 O 1.20821 * 120.00310 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99530 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46859 * 60.00606 * 5 3 2 7 7 C 1.50699 * 109.47589 * 300.00467 * 5 3 2 8 8 C 1.38243 * 119.99193 * 342.42800 * 7 5 3 9 9 C 1.38195 * 120.02729 * 180.02562 * 8 7 5 10 10 C 1.38391 * 120.01215 * 0.04166 * 9 8 7 11 11 Cl 1.73599 * 120.00577 * 180.02562 * 10 9 8 12 12 C 1.38306 * 119.98596 * 359.97438 * 10 9 8 13 13 C 1.38339 * 119.99222 * 162.46937 * 7 5 3 14 14 Cl 1.73602 * 120.00944 * 0.25299 * 13 7 5 15 15 N 1.46504 * 109.47078 * 179.97438 * 5 3 2 16 16 C 1.46497 * 119.99476 * 65.25068 * 15 5 3 17 17 C 1.36931 * 119.99984 * 245.24909 * 15 5 3 18 18 H 1.08000 * 120.00191 * 18.37596 * 17 15 5 19 19 C 1.38821 * 119.99923 * 198.36683 * 17 15 5 20 20 N 1.31620 * 119.99463 * 17.03299 * 19 17 15 21 21 Si 1.86797 * 120.00040 * 197.03174 * 19 17 15 22 22 H 1.48504 * 109.47113 * 94.98711 * 21 19 17 23 23 H 1.48502 * 109.46793 * 214.98633 * 21 19 17 24 24 H 1.48500 * 109.47404 * 334.98261 * 21 19 17 25 25 H 1.08997 * 109.47455 * 60.00084 * 1 2 3 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47841 * 299.99812 * 1 2 3 28 28 H 1.07997 * 119.98636 * 0.04006 * 8 7 5 29 29 H 1.08000 * 119.99534 * 180.02562 * 9 8 7 30 30 H 1.08001 * 120.01402 * 180.02562 * 12 10 9 31 31 H 1.09001 * 109.46918 * 94.56046 * 16 15 5 32 32 H 1.08994 * 109.47066 * 214.55497 * 16 15 5 33 33 H 1.08999 * 109.47522 * 334.56242 * 16 15 5 34 34 H 0.97007 * 119.99193 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1047 0.5920 1.2313 8 6 3.2703 0.3452 2.3055 9 6 3.7634 -0.2806 3.4347 10 6 5.0932 -0.6598 3.4910 11 17 5.7123 -1.4464 4.9093 12 6 5.9285 -0.4128 2.4167 13 6 5.4340 0.2130 1.2861 14 17 6.4835 0.5299 -0.0599 15 7 3.9816 2.6799 -0.0002 16 6 3.6794 3.5335 1.1514 17 6 4.6523 3.1950 -1.0771 18 1 4.6204 2.6839 -2.0280 19 6 5.3729 4.3743 -0.9468 20 7 5.6960 4.8192 0.2491 21 14 5.8841 5.3295 -2.4685 22 1 4.8814 6.3886 -2.7481 23 1 7.2120 5.9533 -2.2383 24 1 5.9655 4.4061 -3.6286 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8900 28 1 2.2326 0.6412 2.2622 29 1 3.1110 -0.4736 4.2735 30 1 6.9662 -0.7088 2.4600 31 1 4.5329 3.5448 1.8293 32 1 3.4747 4.5476 0.8082 33 1 2.8058 3.1434 1.6736 34 1 6.1999 5.6431 0.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072596831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:12 Heat of formation + Delta-G solvation = -37.699154 kcal Electronic energy + Delta-G solvation = -22733.504720 eV Core-core repulsion = 19105.727273 eV Total energy + Delta-G solvation = -3627.777447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.28948 -38.95702 -36.69337 -36.20923 -35.78956 -35.13660 -32.38269 -30.69140 -30.09549 -28.01168 -26.43608 -25.81132 -22.98579 -22.29055 -21.75025 -19.72390 -17.49671 -17.23799 -16.64872 -16.27848 -15.82228 -15.33347 -15.14261 -14.63510 -14.00065 -13.84443 -13.53121 -13.38148 -13.21800 -12.71453 -12.37406 -12.21586 -11.86395 -11.75238 -11.53934 -11.19137 -10.93992 -10.92027 -10.84315 -10.71969 -10.57040 -10.34207 -10.27527 -10.15110 -10.01943 -9.76602 -8.69315 -8.64842 -8.30193 -7.05775 -5.87016 -3.27198 1.22812 1.35642 2.08751 2.71341 2.80773 3.14327 3.35778 3.41664 3.41925 3.68541 4.41965 4.87825 4.98134 5.07850 5.25654 5.31778 5.36093 5.37919 5.46550 5.54087 5.63230 5.77498 5.85002 5.96424 6.18585 6.32570 6.56479 6.70514 6.77803 6.86761 7.36027 7.60061 7.72464 8.13357 8.39645 9.03653 9.63256 10.08165 11.17438 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.006060 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.106481 B = 4619.664385 C = 6019.734603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.433 3.567 4 O -0.490 6.490 5 C 0.218 3.782 6 H 0.116 0.884 7 C -0.064 4.064 8 C -0.087 4.087 9 C -0.108 4.108 10 C -0.033 4.033 11 Cl -0.075 7.075 12 C -0.106 4.106 13 C 0.002 3.998 14 Cl -0.034 7.034 15 N -0.545 5.545 16 C 0.165 3.835 17 C -0.257 4.257 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.890 5.890 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -12.617 4.920 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.272 3.728 4 O -0.374 6.374 5 C 0.105 3.895 6 H 0.134 0.866 7 C -0.068 4.068 8 C -0.107 4.107 9 C -0.127 4.127 10 C -0.060 4.060 11 Cl -0.047 7.047 12 C -0.126 4.126 13 C -0.026 4.026 14 Cl -0.004 7.004 15 N -0.262 5.262 16 C 0.021 3.979 17 C -0.385 4.385 18 H 0.092 0.908 19 C -0.185 4.185 20 N -0.532 5.532 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.022 0.978 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.766 -12.078 4.942 13.582 hybrid contribution 0.169 0.708 -0.629 0.962 sum -3.597 -11.370 4.313 12.681 Atomic orbital electron populations 1.23114 0.78383 1.02695 1.01990 1.86655 1.22002 1.35088 1.84700 1.26130 0.93774 0.80968 0.71973 1.90613 1.66673 1.36348 1.43801 1.18779 0.85746 0.88900 0.96089 0.86622 1.20260 0.92699 0.95791 0.98041 1.20856 0.99421 0.98213 0.92201 1.20937 0.93525 0.99435 0.98797 1.20582 0.94080 1.02164 0.89163 1.98347 1.87713 1.79232 1.39379 1.20792 1.00246 1.00369 0.91144 1.20478 0.91316 0.99883 0.90880 1.98415 1.64920 1.93850 1.43245 1.43914 1.61920 1.01215 1.19145 1.20859 0.94974 0.94018 0.88012 1.19179 1.25079 1.06245 0.88037 0.90771 1.24893 0.97629 0.99428 0.96597 1.70134 1.39734 1.22625 1.20735 0.86223 0.77598 0.80282 0.82368 1.21305 1.21644 1.20236 0.92460 0.88911 0.92570 0.85486 0.84935 0.84328 0.94924 0.92934 0.97809 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.89 9.79 -39.26 -0.38 -6.28 16 3 C 0.43 8.35 5.35 36.01 0.19 8.54 16 4 O -0.49 -10.80 14.79 -18.75 -0.28 -11.08 16 5 C 0.22 4.40 2.20 -70.23 -0.15 4.24 16 6 H 0.12 2.28 7.19 -51.93 -0.37 1.91 16 7 C -0.06 -1.15 4.64 -104.58 -0.49 -1.63 16 8 C -0.09 -1.39 8.85 -39.60 -0.35 -1.74 16 9 C -0.11 -1.51 9.83 -39.54 -0.39 -1.90 16 10 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 11 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 12 C -0.11 -1.62 9.62 -39.51 -0.38 -2.00 16 13 C 0.00 0.04 6.31 -39.50 -0.25 -0.21 16 14 Cl -0.03 -0.62 27.25 -51.86 -1.41 -2.03 16 15 N -0.55 -13.02 2.53 -176.15 -0.45 -13.46 16 16 C 0.17 4.06 7.69 59.85 0.46 4.52 16 17 C -0.26 -6.61 9.29 -15.06 -0.14 -6.75 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C 0.01 0.39 5.02 -17.43 -0.09 0.30 16 20 N -0.89 -24.62 10.68 55.49 0.59 -24.03 16 21 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.13 1.98 6.44 -52.49 -0.34 1.64 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.03 0.85 7.48 -51.93 -0.39 0.47 16 32 H 0.05 1.41 7.09 -51.93 -0.37 1.04 16 33 H 0.00 0.08 6.88 -51.93 -0.36 -0.28 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -28.77 322.34 -7.85 -36.62 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.48 Total: -2.49 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.77 Total: 4.12 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.15 Total: -37.50 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.66 Total: -17.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -2.91 Total: -4.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.77 -7.85 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.076 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds