Wall clock time and date at job start Tue Mar 31 2020 11:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99478 * 2 1 4 4 O 1.20821 * 120.00310 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99530 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46859 * 60.00606 * 5 3 2 7 7 C 1.50699 * 109.47589 * 300.00467 * 5 3 2 8 8 C 1.38243 * 119.99193 * 342.42800 * 7 5 3 9 9 C 1.38195 * 120.02729 * 180.02562 * 8 7 5 10 10 C 1.38391 * 120.01215 * 0.04166 * 9 8 7 11 11 Cl 1.73599 * 120.00577 * 180.02562 * 10 9 8 12 12 C 1.38306 * 119.98596 * 359.97438 * 10 9 8 13 13 C 1.38339 * 119.99222 * 162.46937 * 7 5 3 14 14 Cl 1.73602 * 120.00944 * 0.25299 * 13 7 5 15 15 N 1.46504 * 109.47078 * 179.97438 * 5 3 2 16 16 C 1.46497 * 119.99476 * 65.25068 * 15 5 3 17 17 C 1.36931 * 119.99984 * 245.24909 * 15 5 3 18 18 H 1.08000 * 120.00191 * 18.37596 * 17 15 5 19 19 C 1.38821 * 119.99923 * 198.36683 * 17 15 5 20 20 N 1.31620 * 119.99463 * 17.03299 * 19 17 15 21 21 Si 1.86797 * 120.00040 * 197.03174 * 19 17 15 22 22 H 1.48504 * 109.47113 * 94.98711 * 21 19 17 23 23 H 1.48502 * 109.46793 * 214.98633 * 21 19 17 24 24 H 1.48500 * 109.47404 * 334.98261 * 21 19 17 25 25 H 1.08997 * 109.47455 * 60.00084 * 1 2 3 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47841 * 299.99812 * 1 2 3 28 28 H 1.07997 * 119.98636 * 0.04006 * 8 7 5 29 29 H 1.08000 * 119.99534 * 180.02562 * 9 8 7 30 30 H 1.08001 * 120.01402 * 180.02562 * 12 10 9 31 31 H 1.09001 * 109.46918 * 94.56046 * 16 15 5 32 32 H 1.08994 * 109.47066 * 214.55497 * 16 15 5 33 33 H 1.08999 * 109.47522 * 334.56242 * 16 15 5 34 34 H 0.97007 * 119.99193 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1047 0.5920 1.2313 8 6 3.2703 0.3452 2.3055 9 6 3.7634 -0.2806 3.4347 10 6 5.0932 -0.6598 3.4910 11 17 5.7123 -1.4464 4.9093 12 6 5.9285 -0.4128 2.4167 13 6 5.4340 0.2130 1.2861 14 17 6.4835 0.5299 -0.0599 15 7 3.9816 2.6799 -0.0002 16 6 3.6794 3.5335 1.1514 17 6 4.6523 3.1950 -1.0771 18 1 4.6204 2.6839 -2.0280 19 6 5.3729 4.3743 -0.9468 20 7 5.6960 4.8192 0.2491 21 14 5.8841 5.3295 -2.4685 22 1 4.8814 6.3886 -2.7481 23 1 7.2120 5.9533 -2.2383 24 1 5.9655 4.4061 -3.6286 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8900 28 1 2.2326 0.6412 2.2622 29 1 3.1110 -0.4736 4.2735 30 1 6.9662 -0.7088 2.4600 31 1 4.5329 3.5448 1.8293 32 1 3.4747 4.5476 0.8082 33 1 2.8058 3.1434 1.6736 34 1 6.1999 5.6431 0.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:12 Heat of formation + Delta-G solvation = -52.026917 kcal Electronic energy + Delta-G solvation = -22734.126018 eV Core-core repulsion = 19105.727273 eV Total energy + Delta-G solvation = -3628.398745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75775 -40.26967 -38.05539 -37.56033 -37.12872 -36.77167 -34.06677 -32.01984 -31.68780 -29.29946 -28.10868 -27.47083 -24.38145 -23.87237 -23.13482 -21.23297 -19.05467 -18.78966 -18.16913 -17.69649 -17.23984 -16.89053 -16.55408 -16.04312 -15.66041 -15.25663 -14.90413 -14.76453 -14.57404 -14.28001 -13.87160 -13.70305 -13.19286 -13.00130 -12.93772 -12.88729 -12.73256 -12.50158 -12.43714 -12.09405 -12.02800 -11.93411 -11.87624 -11.67608 -11.64902 -11.39477 -10.61782 -9.93441 -9.59792 -8.96601 -7.84420 -5.27412 -0.03770 0.11237 0.90852 1.24959 1.42408 1.45875 1.49984 1.56386 1.80395 2.37853 2.56775 3.32472 3.47739 3.64982 3.73487 3.96590 4.10694 4.19164 4.34058 4.38829 4.39824 4.47455 4.63344 4.75107 4.78411 4.94751 5.08129 5.25579 5.31681 5.43771 5.53344 5.59473 5.69423 6.21329 6.87269 7.08680 7.73394 8.16022 9.19744 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.006060 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.106481 B = 4619.664385 C = 6019.734603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.445 3.555 4 O -0.522 6.522 5 C 0.218 3.782 6 H 0.114 0.886 7 C -0.081 4.081 8 C -0.088 4.088 9 C -0.096 4.096 10 C -0.027 4.027 11 Cl -0.051 7.051 12 C -0.106 4.106 13 C -0.011 4.011 14 Cl -0.050 7.050 15 N -0.563 5.563 16 C 0.193 3.807 17 C -0.253 4.253 18 H 0.074 0.926 19 C -0.033 4.033 20 N -0.921 5.921 21 Si 0.956 3.044 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.267 1.267 25 H 0.053 0.947 26 H 0.134 0.866 27 H 0.060 0.940 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.010 0.990 32 H 0.019 0.981 33 H 0.016 0.984 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -14.877 5.971 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.285 3.715 4 O -0.409 6.409 5 C 0.106 3.894 6 H 0.132 0.868 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.115 4.115 10 C -0.054 4.054 11 Cl -0.022 7.022 12 C -0.126 4.126 13 C -0.039 4.039 14 Cl -0.021 7.021 15 N -0.281 5.281 16 C 0.048 3.952 17 C -0.382 4.382 18 H 0.091 0.909 19 C -0.230 4.230 20 N -0.566 5.566 21 Si 0.785 3.215 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.192 1.192 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.649 -14.423 5.990 16.295 hybrid contribution 0.310 1.127 -0.829 1.433 sum -4.338 -13.296 5.161 14.908 Atomic orbital electron populations 1.23511 0.75622 1.05504 1.02145 1.86602 1.24454 1.32795 1.83882 1.25498 0.93316 0.81364 0.71291 1.90609 1.67252 1.37562 1.45507 1.18852 0.86098 0.87148 0.97298 0.86832 1.20100 0.93246 0.97533 0.97585 1.20942 0.99429 0.98231 0.92147 1.21247 0.93808 0.97624 0.98823 1.20724 0.94113 1.01096 0.89483 1.98366 1.87470 1.78587 1.37767 1.20979 1.01253 0.99667 0.90653 1.20618 0.91039 1.00901 0.91344 1.98405 1.65334 1.94101 1.44234 1.43818 1.62609 1.03090 1.18595 1.20400 0.94266 0.92621 0.87874 1.19325 1.23931 1.06246 0.88700 0.90861 1.25466 0.98554 1.00471 0.98484 1.70257 1.41419 1.22837 1.22118 0.85416 0.76644 0.79063 0.80344 1.21968 1.22122 1.19156 0.92766 0.84747 0.92088 0.85070 0.81677 0.82806 0.97181 0.96241 0.96586 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -10.83 9.79 -51.44 -0.50 -11.33 16 3 C 0.45 16.78 5.35 71.24 0.38 17.16 16 4 O -0.52 -22.84 14.79 21.98 0.33 -22.51 16 5 C 0.22 8.73 2.20 43.50 0.10 8.82 16 6 H 0.11 4.52 7.19 -2.38 -0.02 4.50 16 7 C -0.08 -2.86 4.64 -19.84 -0.09 -2.95 16 8 C -0.09 -2.62 8.85 22.26 0.20 -2.43 16 9 C -0.10 -2.37 9.83 22.30 0.22 -2.15 16 10 C -0.03 -0.68 6.32 22.32 0.14 -0.54 16 11 Cl -0.05 -1.08 28.96 -2.72 -0.08 -1.16 16 12 C -0.11 -3.04 9.62 22.31 0.21 -2.83 16 13 C -0.01 -0.38 6.31 22.32 0.14 -0.24 16 14 Cl -0.05 -1.84 27.25 -2.72 -0.07 -1.92 16 15 N -0.56 -27.31 2.53 -711.22 -1.80 -29.11 16 16 C 0.19 9.74 7.69 127.77 0.98 10.72 16 17 C -0.25 -13.26 9.29 84.04 0.78 -12.48 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 19 C -0.03 -1.80 5.02 84.86 0.43 -1.38 16 20 N -0.92 -52.69 10.68 21.65 0.23 -52.46 16 21 Si 0.96 44.56 29.59 68.60 2.03 46.59 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 26 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.13 3.79 6.44 -2.91 -0.02 3.77 16 29 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.01 0.54 7.48 -2.39 -0.02 0.52 16 32 H 0.02 1.07 7.09 -2.39 -0.02 1.05 16 33 H 0.02 0.73 6.88 -2.39 -0.02 0.72 16 34 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -63.05 322.34 5.95 -57.10 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 1.14 Total: 1.34 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 4.68 Total: 13.46 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.57 Total: -81.57 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.18 Total: -33.85 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.15 Total: -3.08 kcal Total: -63.05 5.95 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.072 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds