Wall clock time and date at job start Tue Mar 31 2020 11:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00039 * 2 1 4 4 O 1.20823 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00016 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47398 * 300.00100 * 5 3 2 7 7 C 1.50699 * 109.46981 * 60.00086 * 5 3 2 8 8 C 1.38246 * 119.99507 * 16.67832 * 7 5 3 9 9 C 1.38202 * 120.02835 * 179.97438 * 8 7 5 10 10 C 1.38380 * 120.01363 * 359.97438 * 9 8 7 11 11 Cl 1.73590 * 120.00873 * 179.97438 * 10 9 8 12 12 C 1.38307 * 119.98452 * 359.97438 * 10 9 8 13 13 C 1.38340 * 119.99338 * 196.40211 * 7 5 3 14 14 Cl 1.73600 * 120.00827 * 0.02562 * 13 7 5 15 15 N 1.46500 * 109.47123 * 180.02562 * 5 3 2 16 16 C 1.46504 * 119.99667 * 293.93920 * 15 5 3 17 17 C 1.36934 * 120.00200 * 113.94498 * 15 5 3 18 18 H 1.08004 * 119.99396 * 339.93027 * 17 15 5 19 19 C 1.38808 * 120.00133 * 159.93603 * 17 15 5 20 20 N 1.31622 * 120.00017 * 339.99119 * 19 17 15 21 21 Si 1.86801 * 119.99820 * 160.26936 * 19 17 15 22 22 H 1.48502 * 109.47003 * 264.73432 * 21 19 17 23 23 H 1.48501 * 109.47345 * 24.73693 * 21 19 17 24 24 H 1.48497 * 109.46915 * 144.73554 * 21 19 17 25 25 H 1.08999 * 109.47300 * 60.00127 * 1 2 3 26 26 H 1.08995 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47070 * 299.99771 * 1 2 3 28 28 H 1.08000 * 119.98661 * 359.95359 * 8 7 5 29 29 H 1.07996 * 119.99036 * 179.97438 * 9 8 7 30 30 H 1.08005 * 120.01575 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47449 * 265.00894 * 16 15 5 32 32 H 1.08998 * 109.47067 * 25.00857 * 16 15 5 33 33 H 1.08998 * 109.46776 * 145.00969 * 16 15 5 34 34 H 0.96992 * 119.99922 * 180.27535 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1056 0.5915 -1.2295 8 6 3.2677 0.3277 -2.2970 9 6 3.7616 -0.2985 -3.4257 10 6 5.0955 -0.6614 -3.4881 11 17 5.7157 -1.4486 -4.9056 12 6 5.9345 -0.3968 -2.4209 13 6 5.4403 0.2333 -1.2927 14 17 6.4939 0.5705 0.0452 15 7 3.9817 2.6797 0.0011 16 6 3.6961 3.5284 -1.1585 17 6 4.6370 3.1996 1.0853 18 1 4.5691 2.7074 2.0442 19 6 5.3883 4.3591 0.9518 20 7 5.8017 4.7421 -0.2377 21 14 5.8193 5.3717 2.4612 22 1 4.8261 6.4636 2.6248 23 1 5.8000 4.5006 3.6637 24 1 7.1743 5.9559 2.2949 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2265 0.6107 -2.2488 29 1 3.1064 -0.5047 -4.2590 30 1 6.9758 -0.6795 -2.4693 31 1 4.5620 3.5428 -1.8203 32 1 2.8347 3.1316 -1.6957 33 1 3.4791 4.5421 -0.8220 34 1 6.3301 5.5502 -0.3305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:15 Heat of formation + Delta-G solvation = -52.778132 kcal Electronic energy + Delta-G solvation = -22740.522946 eV Core-core repulsion = 19112.091626 eV Total energy + Delta-G solvation = -3628.431320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75432 -40.26416 -38.04756 -37.55084 -37.11388 -36.76293 -34.05661 -32.02470 -31.69172 -29.30162 -28.09883 -27.46620 -24.38435 -23.87350 -23.12624 -21.22665 -19.03608 -18.79164 -18.16808 -17.69215 -17.22556 -16.87484 -16.54692 -16.04456 -15.67883 -15.25575 -14.89935 -14.75717 -14.57199 -14.27501 -13.88413 -13.70846 -13.18274 -12.98962 -12.91594 -12.91002 -12.73638 -12.49248 -12.45865 -12.09574 -12.01539 -11.93188 -11.87571 -11.66489 -11.64333 -11.39589 -10.61274 -9.92828 -9.58987 -8.93947 -7.84904 -5.27718 -0.03279 0.11834 0.91640 1.25379 1.43809 1.45769 1.50309 1.56432 1.80722 2.38426 2.57128 3.31400 3.47735 3.65255 3.74094 3.97158 4.11229 4.19746 4.34484 4.39049 4.40015 4.48268 4.63733 4.75233 4.77075 4.95328 5.08542 5.26011 5.27684 5.43718 5.53694 5.59340 5.68367 6.21893 6.87496 7.08368 7.73472 8.17060 9.19095 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.006074 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.151214 B = 4608.397282 C = 6030.972564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.445 3.555 4 O -0.522 6.522 5 C 0.218 3.782 6 H 0.114 0.886 7 C -0.082 4.082 8 C -0.088 4.088 9 C -0.097 4.097 10 C -0.027 4.027 11 Cl -0.051 7.051 12 C -0.107 4.107 13 C -0.011 4.011 14 Cl -0.049 7.049 15 N -0.561 5.561 16 C 0.190 3.810 17 C -0.256 4.256 18 H 0.071 0.929 19 C -0.029 4.029 20 N -0.916 5.916 21 Si 0.953 3.047 22 H -0.293 1.293 23 H -0.268 1.268 24 H -0.294 1.294 25 H 0.060 0.940 26 H 0.134 0.866 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.013 0.987 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -14.672 -6.087 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.285 3.715 4 O -0.409 6.409 5 C 0.106 3.894 6 H 0.131 0.869 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.115 4.115 10 C -0.054 4.054 11 Cl -0.022 7.022 12 C -0.126 4.126 13 C -0.038 4.038 14 Cl -0.020 7.020 15 N -0.279 5.279 16 C 0.045 3.955 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.226 4.226 20 N -0.560 5.560 21 Si 0.782 3.218 22 H -0.220 1.220 23 H -0.192 1.192 24 H -0.221 1.221 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.183 0.817 30 H 0.171 0.829 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.860 -14.221 -6.110 16.223 hybrid contribution 0.291 1.152 0.838 1.454 sum -4.569 -13.069 -5.273 14.815 Atomic orbital electron populations 1.23510 0.75626 1.05500 1.02145 1.86602 1.24450 1.32809 1.83883 1.25498 0.93320 0.81359 0.71282 1.90607 1.67253 1.37558 1.45512 1.18856 0.86065 0.87190 0.97284 0.86885 1.20097 0.93136 0.97663 0.97612 1.20952 0.99432 0.98185 0.92163 1.21243 0.93760 0.97745 0.98797 1.20720 0.94058 1.01086 0.89527 1.98365 1.87452 1.78575 1.37820 1.20977 1.01249 0.99595 0.90806 1.20625 0.90989 1.00727 0.91495 1.98409 1.65094 1.93684 1.44804 1.43794 1.63316 1.03103 1.17694 1.20402 0.94702 0.92476 0.87905 1.19261 1.23714 1.07690 0.87825 0.91100 1.25433 0.97883 1.00885 0.98408 1.70245 1.38047 1.24738 1.22937 0.85476 0.76488 0.79277 0.80573 1.22010 1.19237 1.22119 0.92076 0.84757 0.92773 0.85009 0.81671 0.82882 0.96900 0.96343 0.96642 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.81 9.74 -51.39 -0.50 -11.31 16 3 C 0.45 16.74 5.37 71.24 0.38 17.13 16 4 O -0.52 -22.76 14.87 21.97 0.33 -22.43 16 5 C 0.22 8.72 2.18 43.50 0.09 8.82 16 6 H 0.11 4.51 7.25 -2.39 -0.02 4.49 16 7 C -0.08 -2.87 4.62 -19.84 -0.09 -2.97 16 8 C -0.09 -2.61 8.84 22.26 0.20 -2.41 16 9 C -0.10 -2.38 9.83 22.30 0.22 -2.16 16 10 C -0.03 -0.68 6.32 22.32 0.14 -0.54 16 11 Cl -0.05 -1.09 28.96 -2.72 -0.08 -1.17 16 12 C -0.11 -3.09 9.62 22.32 0.21 -2.87 16 13 C -0.01 -0.36 6.31 22.32 0.14 -0.22 16 14 Cl -0.05 -1.84 27.21 -2.72 -0.07 -1.91 16 15 N -0.56 -27.12 2.49 -711.22 -1.77 -28.89 16 16 C 0.19 9.50 7.69 127.77 0.98 10.49 16 17 C -0.26 -13.40 9.20 84.03 0.77 -12.62 16 18 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 19 C -0.03 -1.56 4.95 84.86 0.42 -1.14 16 20 N -0.92 -52.04 10.96 21.65 0.24 -51.81 16 21 Si 0.95 44.47 29.60 68.60 2.03 46.50 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.13 3.78 6.39 -2.91 -0.02 3.76 16 29 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.01 0.69 7.41 -2.39 -0.02 0.67 16 32 H 0.02 0.84 6.97 -2.39 -0.02 0.82 16 33 H 0.01 0.83 7.32 -2.39 -0.02 0.81 16 34 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -62.73 322.67 5.98 -56.75 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.13 Total: 1.02 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 4.67 Total: 13.25 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.53 Total: -80.69 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.17 Total: -33.74 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.15 Total: -3.08 kcal Total: -62.73 5.98 -56.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.976 kcal (2) G-P(sol) polarization free energy of solvation -62.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds