Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99622 * 2 1 4 4 N 1.46496 * 109.46617 * 125.00543 * 3 2 1 5 5 C 1.39001 * 119.99548 * 179.97438 * 4 3 2 6 6 N 1.29578 * 125.40756 * 359.97438 * 5 4 3 7 7 N 1.37757 * 115.63034 * 179.75910 * 6 5 4 8 8 C 1.29646 * 115.60523 * 0.49584 * 7 6 5 9 9 S 1.76192 * 125.41618 * 179.79933 * 8 7 6 10 10 C 1.81399 * 103.00037 * 359.69669 * 9 8 7 11 11 C 1.53006 * 109.47004 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.76195 * 99.99997 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47074 * 60.00301 * 18 16 14 20 20 H 1.48498 * 109.47375 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47523 * 300.00614 * 18 16 14 22 22 S 1.76040 * 109.17093 * 359.53502 * 8 7 6 23 23 H 1.08003 * 120.00515 * 359.97438 * 1 2 3 24 24 H 1.08008 * 119.99909 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99815 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47508 * 5.00052 * 3 2 1 27 27 H 1.08998 * 109.46471 * 245.00246 * 3 2 1 28 28 H 0.96996 * 120.00632 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47234 * 60.00072 * 10 9 8 30 30 H 1.09001 * 109.47232 * 299.99583 * 10 9 8 31 31 H 1.08993 * 109.46955 * 300.00150 * 11 10 9 32 32 H 1.09000 * 109.47050 * 59.99979 * 11 10 9 33 33 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 35 35 H 0.97009 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.8035 2.4423 1.3391 6 7 3.8220 3.5068 0.6004 7 7 4.7020 4.4906 0.9948 8 6 5.4069 4.2219 2.0492 9 16 6.6086 5.2880 2.7729 10 6 6.5715 6.7410 1.6875 11 6 7.5772 7.7788 2.1901 12 6 7.5464 9.0040 1.2741 13 16 8.7356 10.2321 1.8691 14 6 8.4960 11.4975 0.6667 15 1 7.7759 11.3596 -0.1262 16 6 9.2319 12.6721 0.7393 17 7 10.1092 12.8404 1.7061 18 14 8.9774 14.0140 -0.5350 19 1 7.5655 14.4724 -0.4958 20 1 9.8777 15.1567 -0.2371 21 1 9.2869 13.4795 -1.8854 22 16 4.9671 2.6258 2.6474 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6211 1.4026 -0.9314 28 1 3.0446 0.5747 1.7355 29 1 5.5709 7.1731 1.6927 30 1 6.8333 6.4429 0.6722 31 1 7.3151 8.0768 3.2052 32 1 8.5781 7.3470 2.1852 33 1 7.8088 8.7057 0.2592 34 1 6.5457 9.4359 1.2787 35 1 10.6239 13.6611 1.7566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = 70.512920 kcal Electronic energy + Delta-G solvation = -17473.259401 eV Core-core repulsion = 14465.140511 eV Total energy + Delta-G solvation = -3008.118890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -39.65647 -37.29902 -34.40689 -34.00538 -32.42744 -30.80850 -27.16219 -26.93140 -25.47307 -24.78058 -21.70864 -21.14795 -20.81979 -19.49618 -17.48865 -17.41276 -17.03587 -16.12600 -15.70420 -15.31944 -14.95544 -14.79967 -14.50638 -14.08244 -14.01765 -13.50087 -13.33431 -13.09803 -12.68421 -11.93090 -11.83836 -11.77304 -11.70086 -11.16612 -11.04899 -10.95206 -10.68009 -10.61050 -10.48112 -10.36086 -10.15367 -9.80785 -9.59176 -9.04992 -8.96236 -8.33942 -7.82087 -6.54355 -6.22764 -3.93661 0.09412 0.57214 0.82199 1.12858 1.51310 2.05486 2.10284 2.76522 3.22870 3.24651 3.28988 3.54867 4.12748 4.22014 4.37429 4.46119 4.87334 4.96170 5.02418 5.10755 5.13673 5.15202 5.21571 5.37690 5.56289 5.73730 5.89522 5.93088 5.97119 6.19917 6.21518 6.43222 6.63072 6.65084 7.60957 7.79838 8.36767 9.23625 10.85323 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.001912 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.980965 B =14642.013337 C =15566.836627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.181 4.181 3 C 0.160 3.840 4 N -0.686 5.686 5 C 0.313 3.687 6 N -0.354 5.354 7 N -0.259 5.259 8 C 0.023 3.977 9 S 0.009 5.991 10 C -0.096 4.096 11 C -0.085 4.085 12 C -0.109 4.109 13 S -0.127 6.127 14 C -0.518 4.518 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.870 5.870 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 S 0.063 5.937 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.417 0.583 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 -27.799 1.418 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.199 4.199 3 C 0.035 3.965 4 N -0.329 5.329 5 C -0.071 4.071 6 N -0.192 5.192 7 N -0.088 5.088 8 C -0.377 4.377 9 S 0.238 5.762 10 C -0.248 4.248 11 C -0.125 4.125 12 C -0.260 4.260 13 S 0.101 5.899 14 C -0.666 4.666 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 S 0.296 5.704 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.254 0.746 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.162 -27.578 2.798 31.128 hybrid contribution -1.787 0.650 -2.747 3.341 sum -15.949 -26.929 0.051 31.297 Atomic orbital electron populations 1.24046 0.95730 1.02700 0.97071 1.22951 0.96232 0.97891 1.02871 1.20536 0.91175 0.95957 0.88804 1.43862 1.41078 1.15397 1.32558 1.25953 0.94424 0.92717 0.93961 1.75123 1.20126 0.98615 1.25315 1.75467 1.03855 1.19327 1.10104 1.30406 1.06297 1.00412 1.00591 1.85719 1.40847 1.12756 1.36864 1.23900 1.05226 0.94317 1.01342 1.21094 0.98159 0.93034 1.00230 1.23248 1.03727 0.97945 1.01044 1.84623 1.50001 1.13760 1.41504 1.22653 1.27305 1.02626 1.14038 0.90883 1.25008 0.94519 0.97868 0.96313 1.70012 1.22906 1.26714 1.30873 0.86215 0.78316 0.80108 0.80857 1.19915 1.20805 1.19921 1.85548 1.38528 1.14876 1.31487 0.87958 0.87627 0.86486 0.90736 0.90309 0.74575 0.88497 0.88499 0.90287 0.90294 0.91657 0.91663 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 14.32 29.01 0.42 -0.15 16 2 C -0.18 -0.74 9.63 -36.02 -0.35 -1.08 16 3 C 0.16 1.01 6.42 -5.19 -0.03 0.98 16 4 N -0.69 -4.82 5.72 -62.01 -0.35 -5.18 16 5 C 0.31 3.34 8.42 -87.39 -0.74 2.60 16 6 N -0.35 -4.99 11.68 30.86 0.36 -4.63 16 7 N -0.26 -3.93 11.62 31.11 0.36 -3.57 16 8 C 0.02 0.30 7.82 51.84 0.41 0.71 16 9 S 0.01 0.11 22.16 -107.50 -2.38 -2.27 16 10 C -0.10 -1.31 5.54 37.16 0.21 -1.11 16 11 C -0.08 -1.33 5.22 -26.73 -0.14 -1.47 16 12 C -0.11 -2.15 5.67 37.16 0.21 -1.94 16 13 S -0.13 -3.28 21.44 -107.50 -2.30 -5.58 16 14 C -0.52 -14.82 9.50 30.94 0.29 -14.53 16 15 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 17 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 18 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 S 0.06 0.62 23.39 -107.50 -2.51 -1.89 16 23 H 0.10 0.37 7.84 -52.48 -0.41 -0.04 16 24 H 0.11 0.25 8.06 -52.48 -0.42 -0.17 16 25 H 0.12 0.34 8.06 -52.49 -0.42 -0.08 16 26 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.42 1.81 8.59 -40.82 -0.35 1.46 16 29 H 0.10 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.10 1.34 8.14 -51.92 -0.42 0.91 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -32.91 351.60 -10.16 -43.07 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.52 Total: -2.61 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 0.18 Total: -14.04 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.10 Total: -38.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -7.20 Total: -9.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.91 -10.16 -43.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.586 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds