Wall clock time and date at job start Tue Mar 31 2020 12:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99622 * 2 1 4 4 N 1.46496 * 109.46617 * 125.00543 * 3 2 1 5 5 C 1.39001 * 119.99548 * 179.97438 * 4 3 2 6 6 N 1.29578 * 125.40756 * 359.97438 * 5 4 3 7 7 N 1.37757 * 115.63034 * 179.75910 * 6 5 4 8 8 C 1.29646 * 115.60523 * 0.49584 * 7 6 5 9 9 S 1.76192 * 125.41618 * 179.79933 * 8 7 6 10 10 C 1.81399 * 103.00037 * 359.69669 * 9 8 7 11 11 C 1.53006 * 109.47004 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.76195 * 99.99997 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99985 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47074 * 60.00301 * 18 16 14 20 20 H 1.48498 * 109.47375 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47523 * 300.00614 * 18 16 14 22 22 S 1.76040 * 109.17093 * 359.53502 * 8 7 6 23 23 H 1.08003 * 120.00515 * 359.97438 * 1 2 3 24 24 H 1.08008 * 119.99909 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99815 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47508 * 5.00052 * 3 2 1 27 27 H 1.08998 * 109.46471 * 245.00246 * 3 2 1 28 28 H 0.96996 * 120.00632 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47234 * 60.00072 * 10 9 8 30 30 H 1.09001 * 109.47232 * 299.99583 * 10 9 8 31 31 H 1.08993 * 109.46955 * 300.00150 * 11 10 9 32 32 H 1.09000 * 109.47050 * 59.99979 * 11 10 9 33 33 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 35 35 H 0.97009 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.8035 2.4423 1.3391 6 7 3.8220 3.5068 0.6004 7 7 4.7020 4.4906 0.9948 8 6 5.4069 4.2219 2.0492 9 16 6.6086 5.2880 2.7729 10 6 6.5715 6.7410 1.6875 11 6 7.5772 7.7788 2.1901 12 6 7.5464 9.0040 1.2741 13 16 8.7356 10.2321 1.8691 14 6 8.4960 11.4975 0.6667 15 1 7.7759 11.3596 -0.1262 16 6 9.2319 12.6721 0.7393 17 7 10.1092 12.8404 1.7061 18 14 8.9774 14.0140 -0.5350 19 1 7.5655 14.4724 -0.4958 20 1 9.8777 15.1567 -0.2371 21 1 9.2869 13.4795 -1.8854 22 16 4.9671 2.6258 2.6474 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6211 1.4026 -0.9314 28 1 3.0446 0.5747 1.7355 29 1 5.5709 7.1731 1.6927 30 1 6.8333 6.4429 0.6722 31 1 7.3151 8.0768 3.2052 32 1 8.5781 7.3470 2.1852 33 1 7.8088 8.7057 0.2592 34 1 6.5457 9.4359 1.2787 35 1 10.6239 13.6611 1.7566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:59 Heat of formation + Delta-G solvation = 50.485933 kcal Electronic energy + Delta-G solvation = -17474.127836 eV Core-core repulsion = 14465.140511 eV Total energy + Delta-G solvation = -3008.987325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 7.13 seconds Orbital eigenvalues (eV) -40.55244 -37.92639 -35.75579 -34.59089 -34.52146 -31.63953 -28.58897 -27.63484 -27.51837 -25.63204 -22.99334 -21.98094 -21.40969 -20.22050 -19.56263 -18.28587 -17.77078 -16.88584 -16.86701 -16.69985 -16.44914 -16.07264 -15.60641 -15.29038 -14.86887 -14.53651 -14.41181 -14.10174 -13.74504 -13.55203 -13.40275 -12.92176 -12.82202 -12.55700 -12.46808 -12.09933 -12.08797 -11.96075 -11.67336 -11.35551 -11.21657 -11.13034 -10.72300 -10.51425 -10.33948 -9.69804 -8.76741 -8.65407 -8.36824 -6.12742 -0.77146 -0.32444 -0.07221 0.20693 0.97763 1.13739 1.17880 1.32714 1.41283 1.48057 1.75631 2.12572 2.28356 2.97566 3.30704 3.50927 3.76886 3.82407 3.92373 4.02089 4.10633 4.14435 4.32236 4.49467 4.62842 4.65243 4.76629 4.95123 5.00124 5.17772 5.40828 5.44907 5.61455 5.70999 6.10393 6.18701 6.93343 7.05671 8.72183 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.001912 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.980965 B =14642.013337 C =15566.836627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.183 4.183 3 C 0.159 3.841 4 N -0.668 5.668 5 C 0.310 3.690 6 N -0.394 5.394 7 N -0.290 5.290 8 C -0.001 4.001 9 S 0.033 5.967 10 C -0.092 4.092 11 C -0.073 4.073 12 C -0.087 4.087 13 S -0.185 6.185 14 C -0.542 4.542 15 H 0.073 0.927 16 C 0.017 3.983 17 N -0.906 5.906 18 Si 0.992 3.008 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.266 1.266 22 S 0.121 5.879 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.431 0.569 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 -29.594 1.245 33.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.202 4.202 3 C 0.034 3.966 4 N -0.311 5.311 5 C -0.073 4.073 6 N -0.233 5.233 7 N -0.119 5.119 8 C -0.401 4.401 9 S 0.262 5.738 10 C -0.244 4.244 11 C -0.113 4.113 12 C -0.238 4.238 13 S 0.043 5.957 14 C -0.690 4.690 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.542 5.542 18 Si 0.814 3.186 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.190 1.190 22 S 0.354 5.646 23 H 0.117 0.883 24 H 0.141 0.859 25 H 0.151 0.849 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.272 0.728 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.359 -29.423 2.641 33.296 hybrid contribution -1.529 1.001 -2.653 3.222 sum -16.888 -28.422 -0.011 33.061 Atomic orbital electron populations 1.24223 0.95663 1.03400 0.95818 1.22890 0.96274 0.97152 1.03877 1.20570 0.90813 0.97121 0.88057 1.44052 1.39802 1.14609 1.32666 1.26221 0.94492 0.92776 0.93778 1.75066 1.21408 0.99787 1.27050 1.75414 1.04699 1.20661 1.11153 1.30593 1.06398 1.02267 1.00847 1.85524 1.40833 1.11691 1.35793 1.23650 1.04287 0.94816 1.01676 1.20927 0.99130 0.91876 0.99413 1.23164 1.01427 0.97481 1.01720 1.84564 1.52990 1.15758 1.42382 1.23027 1.27597 1.03800 1.14562 0.90930 1.26027 0.93953 1.00338 0.98457 1.70140 1.23778 1.27571 1.32689 0.85098 0.78634 0.76866 0.78026 1.19038 1.19865 1.19048 1.85275 1.37337 1.12074 1.29916 0.88310 0.85939 0.84868 0.91795 0.91314 0.72841 0.88640 0.88632 0.89936 0.89939 0.91551 0.91564 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 14.32 67.78 0.97 0.17 16 2 C -0.18 -1.14 9.63 25.65 0.25 -0.89 16 3 C 0.16 1.86 6.42 85.63 0.55 2.41 16 4 N -0.67 -8.31 5.72 -350.11 -2.00 -10.31 16 5 C 0.31 6.27 8.42 179.22 1.51 7.78 16 6 N -0.39 -11.00 11.68 -56.29 -0.66 -11.66 16 7 N -0.29 -8.75 11.62 -55.48 -0.64 -9.39 16 8 C 0.00 -0.02 7.82 130.57 1.02 1.00 16 9 S 0.03 0.78 22.16 -56.49 -1.25 -0.47 16 10 C -0.09 -2.47 5.54 71.98 0.40 -2.07 16 11 C -0.07 -2.25 5.22 30.60 0.16 -2.09 16 12 C -0.09 -3.45 5.67 71.98 0.41 -3.04 16 13 S -0.19 -9.78 21.44 -56.49 -1.21 -10.99 16 14 C -0.54 -31.42 9.50 67.95 0.65 -30.78 16 15 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 16 C 0.02 1.00 5.49 84.86 0.47 1.46 16 17 N -0.91 -54.62 13.22 21.65 0.29 -54.33 16 18 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 S 0.12 2.18 23.39 -56.49 -1.32 0.86 16 23 H 0.10 0.59 7.84 -2.91 -0.02 0.56 16 24 H 0.12 0.26 8.06 -2.91 -0.02 0.23 16 25 H 0.13 0.42 8.06 -2.91 -0.02 0.39 16 26 H 0.06 0.90 7.79 -2.39 -0.02 0.88 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.43 2.71 8.59 -92.71 -0.80 1.91 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 34 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 35 H 0.27 15.25 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -71.70 351.60 1.91 -69.80 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.31 Total: 6.30 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 6.38 Total: -26.05 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.02 Total: -85.70 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -3.78 Total: -10.59 kcal Total: -71.70 1.91 -69.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.282 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.13 seconds