Wall clock time and date at job start Tue Mar 31 2020 11:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48500 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47071 * 300.00684 * 3 2 1 6 6 H 1.48502 * 109.46770 * 60.00252 * 3 2 1 7 7 C 1.38804 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99553 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99474 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46762 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.46817 * 180.02562 * 12 11 10 14 14 C 1.76199 * 102.99690 * 180.02562 * 13 12 11 15 15 N 1.29645 * 125.41219 * 359.69383 * 14 13 12 16 16 N 1.37773 * 115.60284 * 179.79728 * 15 14 13 17 17 C 1.29572 * 115.62461 * 0.50364 * 16 15 14 18 18 N 1.39001 * 125.40103 * 179.76525 * 17 16 15 19 19 C 1.46490 * 120.00189 * 359.96518 * 18 17 16 20 20 C 1.53005 * 117.50368 * 223.75065 * 19 18 17 21 21 C 1.53005 * 117.50064 * 155.09122 * 19 18 17 22 22 S 1.76036 * 109.19442 * 359.73797 * 17 16 15 23 23 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47036 * 60.00552 * 10 9 7 25 25 H 1.09002 * 109.47543 * 300.00043 * 10 9 7 26 26 H 1.09004 * 109.47407 * 60.00316 * 11 10 9 27 27 H 1.09007 * 109.47535 * 300.00380 * 11 10 9 28 28 H 1.09000 * 109.46988 * 60.00370 * 12 11 10 29 29 H 1.08998 * 109.46864 * 299.99964 * 12 11 10 30 30 H 0.96998 * 119.99810 * 179.97438 * 18 17 16 31 31 H 1.09008 * 115.54982 * 9.42898 * 19 18 17 32 32 H 1.09002 * 117.49271 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49760 * 145.02446 * 20 19 18 34 34 H 1.09000 * 117.50041 * 214.98422 * 21 19 18 35 35 H 1.09004 * 117.49354 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0005 13 16 2.5151 -8.0066 -0.0021 14 6 3.9838 -8.9799 -0.0004 15 7 5.1937 -8.5140 -0.0041 16 7 6.1958 -9.4596 0.0026 17 6 5.8015 -10.6939 0.0015 18 7 6.6359 -11.8056 0.0028 19 6 8.0902 -11.6300 0.0048 20 6 8.9105 -12.5187 -0.9325 21 6 8.9384 -12.7673 0.5777 22 16 4.0418 -10.7394 -0.0009 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3709 -5.4841 -0.8914 27 1 1.3703 -5.4847 0.8886 28 1 3.7593 -6.1479 0.8899 29 1 3.7605 -6.1475 -0.8901 30 1 6.2550 -12.6977 0.0023 31 1 8.4404 -10.6105 0.1663 32 1 8.3678 -13.2337 -1.5509 33 1 9.8005 -12.0839 -1.3873 34 1 9.8467 -12.4960 1.1157 35 1 8.4141 -13.6464 0.9527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:12 Heat of formation + Delta-G solvation = 77.794323 kcal Electronic energy + Delta-G solvation = -17592.689745 eV Core-core repulsion = 14584.886601 eV Total energy + Delta-G solvation = -3007.803144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76006 -38.27803 -34.48035 -34.35825 -32.43307 -30.57164 -27.10799 -25.49547 -25.30035 -23.28392 -22.95844 -21.59264 -20.76670 -19.74766 -17.67851 -17.49161 -16.96156 -16.14536 -15.63694 -15.20074 -15.11771 -14.80625 -14.49126 -14.09838 -13.52403 -13.34648 -13.16870 -13.10463 -12.57589 -12.14332 -11.92469 -11.84304 -11.17844 -11.13543 -11.08756 -11.07215 -10.93703 -10.67768 -10.60562 -10.48163 -10.28746 -9.78948 -9.58551 -9.07142 -8.88260 -8.33764 -7.82782 -6.54930 -6.23723 -3.94399 0.06196 0.52934 0.78638 1.13152 2.03728 2.05053 2.50189 3.21642 3.22904 3.30756 3.31336 3.54676 4.05201 4.21107 4.30003 4.35380 4.43307 4.86044 5.01385 5.05923 5.09803 5.12911 5.23993 5.34892 5.36979 5.49876 5.55384 5.72892 5.92222 6.19109 6.23341 6.42466 6.57175 6.64401 7.60988 7.76503 8.36652 9.23011 10.84509 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.001962 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.826393 B =14264.691851 C =15165.438983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.074 0.926 9 S -0.128 6.128 10 C -0.109 4.109 11 C -0.085 4.085 12 C -0.096 4.096 13 S 0.010 5.990 14 C 0.024 3.976 15 N -0.259 5.259 16 N -0.352 5.352 17 C 0.315 3.685 18 N -0.660 5.660 19 C 0.094 3.906 20 C -0.193 4.193 21 C -0.188 4.188 22 S 0.066 5.934 23 H 0.267 0.733 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.416 0.584 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 -28.599 -0.027 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.664 4.664 8 H 0.092 0.908 9 S 0.100 5.900 10 C -0.260 4.260 11 C -0.125 4.125 12 C -0.248 4.248 13 S 0.239 5.761 14 C -0.376 4.376 15 N -0.087 5.087 16 N -0.188 5.188 17 C -0.068 4.068 18 N -0.300 5.300 19 C -0.014 4.014 20 C -0.232 4.232 21 C -0.227 4.227 22 S 0.299 5.701 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.254 0.746 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.581 -28.610 -0.028 30.504 hybrid contribution 3.076 1.122 -0.016 3.274 sum 13.656 -27.488 -0.044 30.693 Atomic orbital electron populations 1.70029 1.05911 1.27272 1.47286 1.25021 0.95095 0.99121 0.94563 0.86102 0.79689 0.81797 0.77885 1.19566 1.20561 1.20557 1.22737 0.94621 0.90629 1.58460 0.90771 1.84634 1.09035 0.99418 1.96887 1.23247 1.03240 0.95990 1.03473 1.21097 0.95301 0.92013 1.04104 1.23907 1.02877 0.90724 1.07289 1.85732 0.99023 1.00965 1.90361 1.30426 1.02667 0.97414 1.07135 1.75482 0.94309 1.23088 1.15840 1.75106 1.22120 0.95258 1.26359 1.25864 0.91631 0.91791 0.97468 1.43205 1.03256 1.03671 1.79866 1.21731 0.77252 0.98170 1.04253 1.23518 1.02967 1.03616 0.93143 1.23459 1.02422 1.00228 0.96569 1.85555 1.01471 1.03862 1.79194 0.92327 0.91650 0.91654 0.90283 0.90290 0.88475 0.88475 0.74572 0.84102 0.88356 0.87637 0.87490 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 9 S -0.13 -3.29 21.44 -107.50 -2.30 -5.60 16 10 C -0.11 -2.14 5.67 37.16 0.21 -1.93 16 11 C -0.08 -1.32 5.22 -26.73 -0.14 -1.46 16 12 C -0.10 -1.31 5.54 37.16 0.21 -1.10 16 13 S 0.01 0.12 22.16 -107.50 -2.38 -2.26 16 14 C 0.02 0.31 7.82 51.84 0.41 0.71 16 15 N -0.26 -3.88 11.62 31.12 0.36 -3.52 16 16 N -0.35 -4.90 11.35 30.85 0.35 -4.55 16 17 C 0.32 3.35 8.42 -87.39 -0.74 2.61 16 18 N -0.66 -4.70 5.74 -54.34 -0.31 -5.01 16 19 C 0.09 0.62 6.55 -67.93 -0.45 0.17 16 20 C -0.19 -0.91 10.46 -26.69 -0.28 -1.19 16 21 C -0.19 -0.80 10.46 -26.69 -0.28 -1.08 16 22 S 0.07 0.65 23.39 -107.50 -2.51 -1.87 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 25 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 29 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 30 H 0.42 1.81 8.95 -40.82 -0.37 1.45 16 31 H 0.14 1.16 7.63 -51.92 -0.40 0.77 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.75 349.06 -11.22 -43.97 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.53 Total: -2.05 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.86 Total: -15.79 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.13 Total: -38.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -7.20 Total: -9.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.75 -11.22 -43.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.768 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds