Wall clock time and date at job start Tue Mar 31 2020 11:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48500 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47071 * 300.00684 * 3 2 1 6 6 H 1.48502 * 109.46770 * 60.00252 * 3 2 1 7 7 C 1.38804 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99553 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99474 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46762 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.46817 * 180.02562 * 12 11 10 14 14 C 1.76199 * 102.99690 * 180.02562 * 13 12 11 15 15 N 1.29645 * 125.41219 * 359.69383 * 14 13 12 16 16 N 1.37773 * 115.60284 * 179.79728 * 15 14 13 17 17 C 1.29572 * 115.62461 * 0.50364 * 16 15 14 18 18 N 1.39001 * 125.40103 * 179.76525 * 17 16 15 19 19 C 1.46490 * 120.00189 * 359.96518 * 18 17 16 20 20 C 1.53005 * 117.50368 * 223.75065 * 19 18 17 21 21 C 1.53005 * 117.50064 * 155.09122 * 19 18 17 22 22 S 1.76036 * 109.19442 * 359.73797 * 17 16 15 23 23 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47036 * 60.00552 * 10 9 7 25 25 H 1.09002 * 109.47543 * 300.00043 * 10 9 7 26 26 H 1.09004 * 109.47407 * 60.00316 * 11 10 9 27 27 H 1.09007 * 109.47535 * 300.00380 * 11 10 9 28 28 H 1.09000 * 109.46988 * 60.00370 * 12 11 10 29 29 H 1.08998 * 109.46864 * 299.99964 * 12 11 10 30 30 H 0.96998 * 119.99810 * 179.97438 * 18 17 16 31 31 H 1.09008 * 115.54982 * 9.42898 * 19 18 17 32 32 H 1.09002 * 117.49271 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49760 * 145.02446 * 20 19 18 34 34 H 1.09000 * 117.50041 * 214.98422 * 21 19 18 35 35 H 1.09004 * 117.49354 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0005 13 16 2.5151 -8.0066 -0.0021 14 6 3.9838 -8.9799 -0.0004 15 7 5.1937 -8.5140 -0.0041 16 7 6.1958 -9.4596 0.0026 17 6 5.8015 -10.6939 0.0015 18 7 6.6359 -11.8056 0.0028 19 6 8.0902 -11.6300 0.0048 20 6 8.9105 -12.5187 -0.9325 21 6 8.9384 -12.7673 0.5777 22 16 4.0418 -10.7394 -0.0009 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3709 -5.4841 -0.8914 27 1 1.3703 -5.4847 0.8886 28 1 3.7593 -6.1479 0.8899 29 1 3.7605 -6.1475 -0.8901 30 1 6.2550 -12.6977 0.0023 31 1 8.4404 -10.6105 0.1663 32 1 8.3678 -13.2337 -1.5509 33 1 9.8005 -12.0839 -1.3873 34 1 9.8467 -12.4960 1.1157 35 1 8.4141 -13.6464 0.9527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:12 Heat of formation + Delta-G solvation = 58.210529 kcal Electronic energy + Delta-G solvation = -17593.538962 eV Core-core repulsion = 14584.886601 eV Total energy + Delta-G solvation = -3008.652361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60422 -38.84816 -35.76117 -35.08215 -34.59421 -31.41655 -28.58418 -27.57204 -26.16866 -23.95979 -23.30368 -22.92944 -21.53433 -20.57306 -19.56930 -18.46214 -17.78073 -16.89414 -16.83449 -16.71630 -16.30455 -16.25132 -15.60076 -15.18082 -14.86485 -14.42640 -14.22476 -13.80917 -13.64317 -13.55177 -13.41132 -12.94956 -12.82149 -12.45619 -12.44622 -12.09725 -12.03506 -11.74148 -11.67476 -11.49786 -11.35473 -11.19196 -11.15275 -10.60678 -10.33650 -9.56371 -8.74300 -8.65577 -8.37609 -6.13224 -0.79033 -0.34628 -0.09218 0.20084 0.97137 1.14852 1.32742 1.38436 1.49743 1.75610 1.85705 2.27588 2.90233 2.96880 3.30200 3.36040 3.75525 3.82150 3.90946 3.95152 3.98805 4.08827 4.14397 4.31995 4.62579 4.71035 4.74483 4.76436 4.99248 4.99894 5.17563 5.17819 5.41132 5.58809 6.06133 6.18822 6.91816 7.05254 8.71923 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.001962 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.826393 B =14264.691851 C =15165.438983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.072 0.928 9 S -0.186 6.186 10 C -0.087 4.087 11 C -0.073 4.073 12 C -0.093 4.093 13 S 0.034 5.966 14 C -0.001 4.001 15 N -0.290 5.290 16 N -0.392 5.392 17 C 0.314 3.686 18 N -0.642 5.642 19 C 0.064 3.936 20 C -0.183 4.183 21 C -0.168 4.168 22 S 0.123 5.877 23 H 0.272 0.728 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.431 0.569 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.689 -30.543 -0.023 33.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.043 5.957 10 C -0.238 4.238 11 C -0.113 4.113 12 C -0.244 4.244 13 S 0.262 5.738 14 C -0.401 4.401 15 N -0.119 5.119 16 N -0.230 5.230 17 C -0.069 4.069 18 N -0.283 5.283 19 C -0.044 4.044 20 C -0.222 4.222 21 C -0.207 4.207 22 S 0.357 5.643 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.272 0.728 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.790 -30.612 -0.024 32.804 hybrid contribution 2.780 1.493 -0.019 3.156 sum 14.570 -29.118 -0.043 32.560 Atomic orbital electron populations 1.70150 1.07577 1.28505 1.47994 1.26041 0.96043 1.03023 0.93788 0.84984 0.78394 0.76789 0.78316 1.18838 1.19648 1.19636 1.23086 0.94791 0.92060 1.58793 0.90949 1.84571 1.13285 1.00846 1.97043 1.23164 1.00561 0.96559 1.03502 1.20928 0.95977 0.89944 1.04483 1.23653 1.01752 0.91823 1.07213 1.85528 0.98334 0.99341 1.90577 1.30603 1.02340 0.99638 1.07516 1.75426 0.95153 1.24628 1.16683 1.75057 1.22356 0.96412 1.29214 1.26123 0.92786 0.91916 0.96100 1.43333 1.03390 1.03410 1.78177 1.21778 0.77048 0.98203 1.07371 1.23580 1.02365 1.02646 0.93654 1.23544 1.01750 0.99113 0.96303 1.85268 1.00004 1.00582 1.78436 0.91924 0.91555 0.91562 0.89931 0.89934 0.88621 0.88631 0.72829 0.86326 0.87350 0.87334 0.86817 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.61 13.22 21.65 0.29 -54.32 16 2 C 0.02 0.92 5.49 84.86 0.47 1.39 16 3 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.26 9.50 67.96 0.65 -30.62 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.19 -9.79 21.44 -56.49 -1.21 -11.00 16 10 C -0.09 -3.44 5.67 71.98 0.41 -3.04 16 11 C -0.07 -2.24 5.22 30.60 0.16 -2.08 16 12 C -0.09 -2.46 5.54 71.98 0.40 -2.06 16 13 S 0.03 0.79 22.16 -56.49 -1.25 -0.46 16 14 C 0.00 -0.02 7.82 130.57 1.02 1.00 16 15 N -0.29 -8.71 11.62 -55.47 -0.64 -9.35 16 16 N -0.39 -10.94 11.35 -56.30 -0.64 -11.57 16 17 C 0.31 6.34 8.42 179.22 1.51 7.85 16 18 N -0.64 -8.10 5.74 -325.83 -1.87 -9.97 16 19 C 0.06 0.76 6.55 45.00 0.29 1.06 16 20 C -0.18 -1.34 10.46 30.62 0.32 -1.02 16 21 C -0.17 -1.03 10.46 30.62 0.32 -0.71 16 22 S 0.12 2.22 23.39 -56.49 -1.32 0.90 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.43 2.66 8.95 -92.71 -0.83 1.83 16 31 H 0.12 2.00 7.63 -2.38 -0.02 1.98 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -71.74 349.06 1.21 -70.53 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.28 Total: 7.16 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 5.54 Total: -28.23 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.87 Total: -85.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -3.78 Total: -10.57 kcal Total: -71.74 1.21 -70.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.745 kcal (2) G-P(sol) polarization free energy of solvation -71.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds