Wall clock time and date at job start Tue Mar 31 2020 11:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46619 * 179.97438 * 15 13 12 17 17 C 1.35898 * 116.99860 * 179.97438 * 16 15 13 18 18 C 1.38722 * 120.04435 * 359.72553 * 17 16 15 19 19 C 1.38261 * 119.96084 * 179.78699 * 18 17 16 20 20 Cl 1.73603 * 119.98021 * 180.25228 * 19 18 17 21 21 C 1.38365 * 120.04309 * 0.47057 * 19 18 17 22 22 C 1.38371 * 120.08461 * 359.78041 * 21 19 18 23 23 Cl 1.73592 * 119.98186 * 179.97438 * 22 21 19 24 24 C 1.38270 * 120.03848 * 359.97438 * 22 21 19 25 25 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 26 26 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 27 27 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 28 28 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 29 29 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 30 30 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 31 31 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 32 32 H 1.08003 * 120.01440 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.96134 * 179.76408 * 21 19 18 34 34 H 1.08003 * 120.01625 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 8 2.6966 0.1892 -4.6817 17 6 3.1312 -0.2949 -5.8749 18 6 3.5094 -1.6247 -5.9887 19 6 3.9470 -2.1165 -7.2045 20 17 4.4142 -3.7822 -7.3491 21 6 4.0171 -1.2808 -8.3050 22 6 3.6453 0.0472 -8.1923 23 17 3.7350 1.0935 -9.5746 24 6 3.2023 0.5414 -6.9793 25 1 -0.3633 0.4796 0.9088 26 1 -0.3633 0.5473 -0.8698 27 1 -0.3634 -1.0269 -0.0392 28 1 0.9967 1.3391 3.4805 29 1 2.2491 -1.6318 -1.1525 30 1 3.6482 -1.1214 -3.3984 31 1 1.9761 -1.5507 -3.8325 32 1 3.4583 -2.2764 -5.1289 33 1 4.3628 -1.6654 -9.2531 34 1 2.9125 1.5782 -6.8916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079813081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:36 Heat of formation + Delta-G solvation = -85.015917 kcal Electronic energy + Delta-G solvation = -20737.868161 eV Core-core repulsion = 17108.038905 eV Total energy + Delta-G solvation = -3629.829255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60057 -40.42952 -38.85156 -37.84123 -37.08991 -36.66165 -34.37525 -32.17720 -31.61469 -31.05072 -28.81574 -27.30503 -24.21930 -23.83818 -22.84010 -21.29712 -19.73486 -19.15284 -17.75465 -17.51802 -17.42389 -17.08398 -16.97010 -16.23375 -15.99060 -15.62805 -15.40083 -14.92818 -14.64848 -14.42576 -14.08748 -13.77915 -13.41025 -13.29988 -13.05293 -12.95676 -12.73199 -12.66805 -12.56331 -12.33924 -12.22990 -12.12787 -12.00504 -11.59909 -11.14759 -10.79828 -10.57870 -9.92697 -9.84308 -9.49789 -8.20042 -6.34727 -0.20821 0.01116 0.63373 1.13153 1.46311 1.46687 1.57121 1.64857 1.66164 2.28607 2.40559 2.80315 3.12785 3.61343 3.77091 3.87379 3.88264 3.97942 4.05151 4.10115 4.25068 4.72806 4.82046 4.88718 4.92332 4.94176 5.04104 5.14904 5.40299 5.57415 5.63045 5.84969 6.02702 6.09591 6.73296 6.87522 7.31105 7.48082 8.88919 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002496 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.987515 B =11214.337387 C =12285.519153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.259 1.259 11 H -0.290 1.290 12 N -0.696 5.696 13 C 0.498 3.502 14 O -0.588 6.588 15 C 0.047 3.953 16 O -0.307 6.307 17 C 0.148 3.852 18 C -0.196 4.196 19 C 0.014 3.986 20 Cl -0.043 7.043 21 C -0.138 4.138 22 C 0.013 3.987 23 Cl -0.044 7.044 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.015 0.985 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -10.438 -22.449 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.183 1.183 11 H -0.216 1.216 12 N -0.347 5.347 13 C 0.284 3.716 14 O -0.468 6.468 15 C -0.031 4.031 16 O -0.219 6.219 17 C 0.102 3.898 18 C -0.215 4.215 19 C -0.014 4.014 20 Cl -0.014 7.014 21 C -0.158 4.158 22 C -0.014 4.014 23 Cl -0.015 7.015 24 C -0.170 4.170 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.309 -9.343 -22.419 25.094 hybrid contribution 0.108 -0.380 0.996 1.072 sum 6.417 -9.722 -21.423 24.385 Atomic orbital electron populations 1.21861 0.98250 0.99690 0.99252 1.18382 0.91046 0.92255 0.81661 0.98106 1.21537 1.35482 1.10842 0.90537 0.90279 1.25817 0.94828 0.95490 1.02454 1.70121 1.43282 1.17620 1.24804 0.85349 0.78811 0.78252 0.78029 1.19837 1.18308 1.21607 1.46087 1.65106 1.14508 1.08972 1.20743 0.78319 0.87181 0.85378 1.90700 1.52110 1.18384 1.85634 1.22734 1.05442 0.91823 0.83087 1.86189 1.80645 1.38658 1.16451 1.18718 0.93909 0.91885 0.85319 1.21423 1.05766 0.94875 0.99453 1.20457 0.99925 0.86910 0.94058 1.98406 1.90248 1.14648 1.98109 1.20984 1.03753 0.91040 1.00006 1.20333 1.00968 0.91525 0.88617 1.98400 1.96646 1.65883 1.40543 1.20439 1.05090 1.01634 0.89806 0.92818 0.96625 0.93054 0.92577 0.75273 0.85526 0.85243 0.81573 0.81930 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 9.32 71.98 0.67 -5.71 16 2 C 0.27 13.45 2.45 44.25 0.11 13.56 16 3 H 0.00 0.06 7.57 -2.39 -0.02 0.04 16 4 C -0.55 -27.67 8.69 25.60 0.22 -27.44 16 5 H 0.08 3.66 7.73 -2.91 -0.02 3.64 16 6 C 0.01 0.75 5.21 84.65 0.44 1.19 16 7 N -0.92 -52.50 11.92 21.45 0.26 -52.24 16 8 Si 0.97 40.78 29.54 68.60 2.03 42.80 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.70 -26.35 5.07 -446.09 -2.26 -28.61 16 13 C 0.50 18.62 7.87 87.66 0.69 19.31 16 14 O -0.59 -28.95 16.16 16.01 0.26 -28.69 16 15 C 0.05 1.11 5.22 71.24 0.37 1.48 16 16 O -0.31 -8.70 9.67 -73.36 -0.71 -9.41 16 17 C 0.15 3.30 6.69 22.50 0.15 3.45 16 18 C -0.20 -3.37 8.82 22.39 0.20 -3.17 16 19 C 0.01 0.22 6.32 22.31 0.14 0.36 16 20 Cl -0.04 -0.61 28.95 -2.72 -0.08 -0.69 16 21 C -0.14 -2.15 9.61 22.33 0.21 -1.93 16 22 C 0.01 0.23 6.32 22.31 0.14 0.37 16 23 Cl -0.04 -0.72 28.95 -2.72 -0.08 -0.80 16 24 C -0.15 -3.19 9.77 22.39 0.22 -2.97 16 25 H 0.05 2.86 6.60 -2.39 -0.02 2.85 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.41 12.02 8.53 -92.70 -0.79 11.23 16 30 H 0.13 2.16 7.65 -2.39 -0.02 2.14 16 31 H 0.13 2.11 7.67 -2.39 -0.02 2.09 16 32 H 0.17 2.10 6.30 -2.91 -0.02 2.09 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -68.53 330.62 3.34 -65.19 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.36 Total: 13.95 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 3.57 Total: -1.51 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -2.01 Total: -80.85 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.45 Total: -38.10 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.16 Total: -1.49 kcal Total: -68.53 3.34 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079813081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.829 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds