Wall clock time and date at job start Tue Mar 31 2020 11:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34223 * 117.00208 * 2 1 4 4 O 1.20831 * 119.99794 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00450 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47240 * 179.97438 * 5 3 2 7 7 C 1.36942 * 120.00117 * 269.72465 * 6 5 3 8 8 H 1.08001 * 119.99971 * 144.65961 * 7 6 5 9 9 C 1.38807 * 119.99675 * 324.66530 * 7 6 5 10 10 N 1.31625 * 119.99853 * 159.62275 * 9 7 6 11 11 Si 1.86797 * 120.00283 * 339.62122 * 9 7 6 12 12 H 1.48493 * 109.47394 * 94.51435 * 11 9 7 13 13 H 1.48500 * 109.47034 * 214.51702 * 11 9 7 14 14 H 1.48507 * 109.47072 * 334.51432 * 11 9 7 15 15 C 1.46500 * 119.99954 * 90.00088 * 6 5 3 16 16 C 1.50704 * 109.47281 * 86.74239 * 15 6 5 17 17 C 1.38233 * 119.99098 * 261.21540 * 16 15 6 18 18 C 1.38203 * 120.02485 * 179.72695 * 17 16 15 19 19 C 1.38380 * 120.01432 * 0.54051 * 18 17 16 20 20 Cl 1.73598 * 120.01159 * 179.75189 * 19 18 17 21 21 C 1.38316 * 119.98382 * 359.73212 * 19 18 17 22 22 C 1.38335 * 119.99111 * 81.48250 * 16 15 6 23 23 Cl 1.73602 * 120.00941 * 0.02901 * 22 16 15 24 24 H 1.09008 * 109.47081 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47500 * 299.99883 * 1 2 3 26 26 H 1.08996 * 109.47090 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.46892 * 59.99913 * 5 3 2 28 28 H 1.09000 * 109.47059 * 299.99666 * 5 3 2 29 29 H 0.96996 * 119.99895 * 179.97438 * 10 9 7 30 30 H 1.09007 * 109.47413 * 206.74090 * 15 6 5 31 31 H 1.09001 * 109.47390 * 326.73934 * 15 6 5 32 32 H 1.08001 * 119.99383 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.99342 * 180.27568 * 18 17 16 34 34 H 1.07992 * 120.01406 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1817 3.3340 -1.1864 8 1 3.9272 4.3797 -1.2760 9 6 4.7116 2.6530 -2.2738 10 7 4.5413 3.1232 -3.4913 11 14 5.6662 1.0693 -2.0092 12 1 4.7530 -0.0912 -2.1652 13 1 6.7593 0.9772 -3.0102 14 1 6.2454 1.0631 -0.6417 15 6 4.1888 3.3830 1.2682 16 6 5.6003 3.1549 1.7444 17 6 5.8596 2.1917 2.7013 18 6 7.1546 1.9781 3.1344 19 6 8.1909 2.7361 2.6184 20 17 9.8166 2.4722 3.1672 21 6 7.9313 3.7040 1.6650 22 6 6.6354 3.9135 1.2278 23 17 6.3085 5.1284 0.0316 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7810 0.8909 29 1 4.9118 2.6475 -4.2511 30 1 4.0223 4.4505 1.1233 31 1 3.4885 3.0038 2.0125 32 1 5.0506 1.6029 3.1078 33 1 7.3572 1.2223 3.8788 34 1 8.7397 4.2956 1.2617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:50 Heat of formation + Delta-G solvation = -55.815240 kcal Electronic energy + Delta-G solvation = -22394.779913 eV Core-core repulsion = 18766.216894 eV Total energy + Delta-G solvation = -3628.563019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27867 -40.45853 -38.10601 -37.52656 -37.05223 -36.78494 -33.95937 -32.45217 -31.78568 -29.98933 -27.85240 -27.52405 -24.18183 -23.82680 -22.48243 -21.66984 -19.12839 -18.64888 -18.23297 -17.74948 -17.12487 -16.93555 -16.67301 -16.36500 -15.97420 -15.20595 -14.85945 -14.69137 -14.56405 -14.46842 -14.29839 -13.97123 -13.43717 -13.09811 -13.01859 -12.95047 -12.81374 -12.51326 -12.21032 -12.06792 -11.90739 -11.87652 -11.69495 -11.66071 -11.55219 -11.31239 -10.64720 -9.86353 -9.49943 -9.00014 -8.14304 -5.54495 0.06162 0.18789 0.96736 1.25085 1.34790 1.43646 1.51550 1.52706 1.89408 2.40283 2.50708 3.11478 3.35533 3.77289 3.90618 4.03519 4.14359 4.22985 4.26384 4.37452 4.38120 4.39355 4.50723 4.58060 4.72279 4.76830 4.99544 5.07936 5.19531 5.43078 5.51615 5.68599 5.91419 6.23340 6.78700 7.03828 7.56043 7.89791 9.04820 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.005369 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.879119 B = 5213.904211 C = 5864.925035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.375 6.375 3 C 0.432 3.568 4 O -0.526 6.526 5 C 0.135 3.865 6 N -0.575 5.575 7 C -0.222 4.222 8 H 0.050 0.950 9 C -0.013 4.013 10 N -0.946 5.946 11 Si 0.911 3.089 12 H -0.269 1.269 13 H -0.314 1.314 14 H -0.241 1.241 15 C 0.182 3.818 16 C -0.094 4.094 17 C -0.089 4.089 18 C -0.104 4.104 19 C -0.037 4.037 20 Cl -0.061 7.061 21 C -0.120 4.120 22 C -0.023 4.023 23 Cl -0.058 7.058 24 H 0.133 0.867 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -6.621 16.064 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.273 3.727 4 O -0.413 6.413 5 C 0.007 3.993 6 N -0.294 5.294 7 C -0.352 4.352 8 H 0.068 0.932 9 C -0.209 4.209 10 N -0.590 5.590 11 Si 0.740 3.260 12 H -0.197 1.197 13 H -0.243 1.243 14 H -0.164 1.164 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.064 4.064 20 Cl -0.032 7.032 21 C -0.140 4.140 22 C -0.051 4.051 23 Cl -0.029 7.029 24 H 0.151 0.849 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.241 -6.211 15.846 17.326 hybrid contribution 0.390 -0.066 -1.032 1.105 sum 3.631 -6.276 14.814 16.494 Atomic orbital electron populations 1.23435 0.76025 1.05240 1.01854 1.86553 1.24384 1.33947 1.84275 1.26180 0.94235 0.81053 0.71268 1.90578 1.67465 1.37579 1.45699 1.21306 0.85544 0.88247 1.04221 1.43901 1.74109 1.08660 1.02755 1.18480 1.34110 0.95420 0.87180 0.93198 1.25845 0.99250 1.00935 0.94915 1.69959 1.47528 1.42843 0.98669 0.86352 0.79333 0.81363 0.78938 1.19686 1.24308 1.16394 1.20073 0.89837 0.97821 0.86474 1.20919 0.97540 0.95626 0.95696 1.21308 0.97535 0.96416 0.95471 1.21400 0.90883 0.99401 1.00555 1.20807 0.86983 0.99335 0.99262 1.98359 1.20286 1.95850 1.88671 1.20981 0.95613 0.99356 0.98020 1.20898 0.94396 0.95359 0.94415 1.98422 1.95527 1.53920 1.55057 0.84942 0.91792 0.93619 0.90703 0.85271 0.93061 0.91982 0.89845 0.81414 0.81620 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.38 -12.44 10.56 -51.35 -0.54 -12.99 16 3 C 0.43 17.04 8.03 71.24 0.57 17.61 16 4 O -0.53 -24.11 16.18 21.95 0.36 -23.76 16 5 C 0.14 5.20 5.09 85.63 0.44 5.64 16 6 N -0.58 -24.75 1.61 -710.67 -1.14 -25.89 16 7 C -0.22 -11.76 7.93 84.03 0.67 -11.09 16 8 H 0.05 3.02 7.85 -2.91 -0.02 2.99 16 9 C -0.01 -0.75 5.35 84.86 0.45 -0.30 16 10 N -0.95 -58.02 13.97 21.65 0.30 -57.72 16 11 Si 0.91 43.02 24.83 68.60 1.70 44.72 16 12 H -0.27 -12.01 6.66 99.48 0.66 -11.34 16 13 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 14 H -0.24 -10.39 7.11 99.48 0.71 -9.69 16 15 C 0.18 6.44 5.37 85.63 0.46 6.90 16 16 C -0.09 -2.96 5.47 -19.84 -0.11 -3.07 16 17 C -0.09 -2.07 9.67 22.26 0.22 -1.86 16 18 C -0.10 -2.24 9.83 22.30 0.22 -2.02 16 19 C -0.04 -0.92 6.32 22.32 0.14 -0.78 16 20 Cl -0.06 -1.32 28.96 -2.72 -0.08 -1.40 16 21 C -0.12 -3.54 9.62 22.32 0.21 -3.33 16 22 C -0.02 -0.78 6.31 22.32 0.14 -0.64 16 23 Cl -0.06 -2.29 25.28 -2.72 -0.07 -2.36 16 24 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.04 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.08 3.20 2.79 -2.39 -0.01 3.20 16 28 H 0.13 3.75 8.07 -2.39 -0.02 3.73 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.06 2.39 7.16 -2.38 -0.02 2.38 16 31 H 0.08 2.47 7.97 -2.39 -0.02 2.45 16 32 H 0.17 2.78 8.04 -2.91 -0.02 2.75 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -69.28 322.52 6.23 -63.06 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.09 Total: 7.37 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 4.61 Total: 8.97 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -0.84 Total: -83.61 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.19 Total: -36.75 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.70 Total: 44.72 kcal Atomic # 17 Polarization: -3.61 SS G_CDS: -0.15 Total: -3.76 kcal Total: -69.28 6.23 -63.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.240 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds