Wall clock time and date at job start Tue Mar 31 2020 11:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00505 * 2 1 4 4 O 1.20829 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00476 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47532 * 180.02562 * 5 3 2 7 7 C 1.36931 * 120.00416 * 276.44782 * 6 5 3 8 8 H 1.08004 * 120.00469 * 179.19929 * 7 6 5 9 9 C 1.38816 * 120.00187 * 359.19304 * 7 6 5 10 10 N 1.31621 * 119.99619 * 28.13630 * 9 7 6 11 11 Si 1.86797 * 120.00641 * 208.13679 * 9 7 6 12 12 H 1.48506 * 109.46956 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47195 * 120.00030 * 11 9 7 14 14 H 1.48496 * 109.47545 * 240.00155 * 11 9 7 15 15 C 1.46502 * 119.99667 * 96.44156 * 6 5 3 16 16 C 1.50696 * 109.47214 * 270.00056 * 15 6 5 17 17 C 1.38220 * 120.00469 * 259.72751 * 16 15 6 18 18 C 1.38332 * 120.00402 * 179.72053 * 17 16 15 19 19 Cl 1.73598 * 120.00349 * 180.29468 * 18 17 16 20 20 C 1.38375 * 119.99587 * 0.58163 * 18 17 16 21 21 C 1.38179 * 120.00326 * 359.69169 * 20 18 17 22 22 C 1.38334 * 119.99695 * 80.00218 * 16 15 6 23 23 Cl 1.73596 * 120.00207 * 0.02562 * 22 16 15 24 24 H 1.09002 * 109.46829 * 60.00024 * 1 2 3 25 25 H 1.08998 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46936 * 300.00188 * 1 2 3 27 27 H 1.09007 * 109.47044 * 60.00492 * 5 3 2 28 28 H 1.08994 * 109.47400 * 300.00516 * 5 3 2 29 29 H 0.97002 * 120.00094 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.47328 * 30.00824 * 15 6 5 31 31 H 1.09007 * 109.46879 * 150.00002 * 15 6 5 32 32 H 1.08005 * 119.99597 * 0.02562 * 17 16 15 33 33 H 1.08000 * 120.00166 * 179.68112 * 20 18 17 34 34 H 1.07996 * 120.00519 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.0488 3.3742 -1.1770 8 1 4.3426 4.4135 -1.1753 9 6 3.7391 2.7427 -2.3738 10 7 2.8916 1.7357 -2.3864 11 14 4.5250 3.3218 -3.9663 12 1 5.4346 4.4612 -3.6837 13 1 5.3002 2.2080 -4.5695 14 1 3.4656 3.7564 -4.9118 15 6 4.3256 3.3412 1.2622 16 6 3.0895 3.9685 1.8536 17 6 2.8638 5.3240 1.7053 18 6 1.7263 5.8988 2.2432 19 17 1.4389 7.5999 2.0504 20 6 0.8204 5.1187 2.9401 21 6 1.0488 3.7645 3.0932 22 6 2.1837 3.1885 2.5497 23 17 2.4710 1.4874 2.7427 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7807 0.8907 29 1 2.6749 1.2945 -3.2227 30 1 4.7297 2.6072 1.9593 31 1 5.0714 4.1140 1.0755 32 1 3.5731 5.9337 1.1652 33 1 -0.0651 5.5683 3.3645 34 1 0.3421 3.1558 3.6375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:53 Heat of formation + Delta-G solvation = -50.341896 kcal Electronic energy + Delta-G solvation = -23226.610514 eV Core-core repulsion = 19598.284837 eV Total energy + Delta-G solvation = -3628.325677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81212 -40.23619 -37.92427 -37.50110 -37.10968 -36.25042 -33.94413 -32.10726 -31.36113 -29.75363 -27.63474 -27.48835 -24.23910 -23.71480 -22.23530 -21.44755 -18.87389 -18.22635 -17.78827 -17.41730 -16.87565 -16.80170 -16.63664 -16.41748 -15.53788 -15.16597 -15.06233 -14.57388 -14.36527 -14.01711 -13.83177 -13.51953 -13.27770 -13.02075 -12.95839 -12.75949 -12.60628 -12.43774 -12.24107 -12.09666 -11.92280 -11.90184 -11.80373 -11.47240 -11.21525 -10.83773 -10.40848 -9.91338 -9.45177 -9.07419 -7.97441 -5.17487 0.07162 0.29064 1.03991 1.28357 1.47741 1.52338 1.60854 2.25354 2.38190 2.57780 2.63262 3.24079 3.66303 3.76669 3.85625 4.18634 4.30136 4.43579 4.46156 4.49617 4.58131 4.65309 4.68996 4.86550 4.93389 5.01765 5.09014 5.20044 5.28864 5.41020 5.66502 5.69883 6.10623 6.19263 7.01659 7.64668 7.84811 8.14486 9.12136 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.007195 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.219009 B = 3890.558041 C = 5320.419171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.391 6.391 3 C 0.484 3.516 4 O -0.535 6.535 5 C 0.185 3.815 6 N -0.568 5.568 7 C -0.247 4.247 8 H 0.084 0.916 9 C -0.045 4.045 10 N -0.923 5.923 11 Si 0.961 3.039 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.308 1.308 15 C 0.172 3.828 16 C -0.076 4.076 17 C -0.099 4.099 18 C -0.038 4.038 19 Cl -0.067 7.067 20 C -0.110 4.110 21 C -0.104 4.104 22 C -0.020 4.020 23 Cl -0.069 7.069 24 H 0.030 0.970 25 H 0.119 0.881 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.249 0.751 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.160 0.840 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 1.664 12.048 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.308 6.308 3 C 0.326 3.674 4 O -0.422 6.422 5 C 0.056 3.944 6 N -0.286 5.286 7 C -0.376 4.376 8 H 0.102 0.898 9 C -0.240 4.240 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.236 1.236 15 C 0.046 3.954 16 C -0.080 4.080 17 C -0.119 4.119 18 C -0.064 4.064 19 Cl -0.038 7.038 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.048 4.048 23 Cl -0.040 7.040 24 H 0.049 0.951 25 H 0.137 0.863 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.810 1.883 11.896 12.180 hybrid contribution -0.511 0.304 -1.406 1.527 sum -2.321 2.187 10.490 10.964 Atomic orbital electron populations 1.23018 0.78192 1.03508 1.00277 1.86482 1.22599 1.36168 1.85579 1.25048 0.93302 0.80154 0.68870 1.90449 1.67110 1.37177 1.47493 1.20737 0.85956 0.86480 1.01189 1.44594 1.74017 1.07456 1.02493 1.19546 1.38278 0.95967 0.83800 0.89783 1.25327 0.98966 0.99215 1.00458 1.70017 1.32982 1.27847 1.26103 0.85303 0.77979 0.77685 0.79977 1.19017 1.21470 1.23648 1.20301 0.91708 0.96814 0.86553 1.20880 0.99980 0.92838 0.94316 1.20925 0.97270 0.94170 0.99559 1.21031 0.97290 0.85675 1.02438 1.98341 1.95972 1.12959 1.96498 1.21082 0.99668 0.92616 0.99570 1.21111 0.95867 0.94970 1.00325 1.20884 0.97499 0.84815 1.01565 1.98327 1.95859 1.14025 1.95812 0.95110 0.86316 0.93266 0.89528 0.90591 0.94132 0.90181 0.89908 0.84502 0.82225 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 10.56 113.37 1.20 2.78 16 2 O -0.39 -16.96 10.56 -51.33 -0.54 -17.51 16 3 C 0.48 22.94 3.16 71.23 0.23 23.17 16 4 O -0.53 -28.12 13.62 21.96 0.30 -27.82 16 5 C 0.19 8.47 4.86 85.63 0.42 8.89 16 6 N -0.57 -25.98 2.07 -710.69 -1.47 -27.45 16 7 C -0.25 -12.60 9.50 84.04 0.80 -11.80 16 8 H 0.08 4.20 7.97 -2.91 -0.02 4.18 16 9 C -0.04 -2.38 4.97 84.86 0.42 -1.96 16 10 N -0.92 -51.65 8.80 21.65 0.19 -51.46 16 11 Si 0.96 43.81 29.64 68.60 2.03 45.85 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 15 C 0.17 6.36 5.40 85.63 0.46 6.82 16 16 C -0.08 -2.77 5.01 -19.85 -0.10 -2.87 16 17 C -0.10 -3.42 9.45 22.29 0.21 -3.21 16 18 C -0.04 -1.17 6.32 22.32 0.14 -1.03 16 19 Cl -0.07 -1.81 28.96 -2.72 -0.08 -1.89 16 20 C -0.11 -3.13 9.83 22.29 0.22 -2.91 16 21 C -0.10 -3.15 9.83 22.29 0.22 -2.93 16 22 C -0.02 -0.70 4.71 22.33 0.11 -0.60 16 23 Cl -0.07 -2.31 22.17 -2.72 -0.06 -2.37 16 24 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 25 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 27 H 0.09 4.42 6.22 -2.38 -0.01 4.40 16 28 H 0.08 3.03 6.43 -2.39 -0.02 3.01 16 29 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.08 2.64 7.06 -2.39 -0.02 2.62 16 31 H 0.08 2.82 7.90 -2.38 -0.02 2.80 16 32 H 0.14 4.49 8.04 -2.91 -0.02 4.47 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -63.35 313.19 5.82 -57.53 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.13 Total: 10.77 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 4.32 Total: 14.35 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.28 Total: -78.91 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.24 Total: -45.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -4.12 SS G_CDS: -0.14 Total: -4.26 kcal Total: -63.35 5.82 -57.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.185 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds